PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000595464	[[47835403, 47835606], [47844041, 47846606]]	[[47844056, 47845070]]
ENST00000600626	[[47840370, 47840426], [47844041, 47845272]]	[[47844056, 47845070]]
ENST00000257267	[[47844039, 47845272]]	[[47844056, 47845070]]
NM_001271749	[[47835403, 47835606], [47844041, 47845272]]	[[47844056, 47845070]]
NM_018485	[[47840261, 47840426], [47844041, 47845272]]	[[47844056, 47845070]]
NM_001271750	[[47843743, 47843869], [47844041, 47845272]]	[[47844056, 47845070]]

Promoter

Chrom	Start	End	Description
chr19	47835425	47835441	CAGE_peak_1_at_GPR77_5end
chr19	47840346	47840365	CAGE_peak_2_at_GPR77_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I047296	47296224	47296413	0.75	[{'connected_gene': 'DHX34', 'score': 11.86}, {'connected_gene': 'C5AR1', 'score': 0.44}, {'connected_gene': 'C5AR2', 'score': 0.28}]
chr19	GH19I047363	47363412	47364952	0.92	[{'connected_gene': 'DHX34', 'score': 36.97}, {'connected_gene': 'C5AR1', 'score': 27.87}, {'connected_gene': 'ZC3H4', 'score': 20.37}, {'connected_gene': 'C5AR2', 'score': 9.46}, {'connected_gene': 'CCDC9', 'score': 7.59}, {'connected_gene': 'NAPA', 'score': 7.27}, {'connected_gene': 'GC19P047354', 'score': 0.39}, {'connected_gene': 'PIR41927', 'score': 0.39}, {'connected_gene': 'GC19P047388', 'score': 0.34}]
chr19	GH19I047369	47369394	47371359	1.01	[{'connected_gene': 'DHX34', 'score': 57.71}, {'connected_gene': 'C5AR1', 'score': 45.19}, {'connected_gene': 'ZC3H4', 'score': 22.79}, {'connected_gene': 'C5AR2', 'score': 13.77}, {'connected_gene': 'CCDC9', 'score': 10.27}, {'connected_gene': 'NAPA', 'score': 9.96}, {'connected_gene': 'GC19P047388', 'score': 0.37}, {'connected_gene': 'GC19P047354', 'score': 0.37}, {'connected_gene': 'PIR41927', 'score': 0.37}]
chr19	GH19I047295	47295984	47296133	0.64	[{'connected_gene': 'DHX34', 'score': 11.86}, {'connected_gene': 'CCDC9', 'score': 7.35}, {'connected_gene': 'C5AR1', 'score': 0.44}, {'connected_gene': 'C5AR2', 'score': 0.28}]
chr19	GH19I047300	47300124	47300273	0.59	[{'connected_gene': 'DHX34', 'score': 11.77}, {'connected_gene': 'SAE1', 'score': 9.93}, {'connected_gene': 'CCDC9', 'score': 6.99}, {'connected_gene': 'C5AR1', 'score': 0.39}, {'connected_gene': 'C5AR2', 'score': 0.29}]
chr19	GH19I047509	47509390	47516495	2.62	[{'connected_gene': 'NAPA', 'score': 555.64}, {'connected_gene': 'ZC3H4', 'score': 18.24}, {'connected_gene': 'BICRA', 'score': 15.84}, {'connected_gene': 'GRWD1', 'score': 13.67}, {'connected_gene': 'NOP53-AS1', 'score': 13.21}, {'connected_gene': 'KDELR1', 'score': 10.0}, {'connected_gene': 'KPTN', 'score': 7.3}, {'connected_gene': 'CCDC9', 'score': 5.13}, {'connected_gene': 'C5AR1', 'score': 5.09}, {'connected_gene': 'DHX34', 'score': 5.01}, {'connected_gene': 'LIG1', 'score': 4.79}, {'connected_gene': 'SULT2A1', 'score': 4.51}, {'connected_gene': 'C5AR2', 'score': 3.59}, {'connected_gene': 'NOP53', 'score': 1.17}, {'connected_gene': 'ENSG00000279861', 'score': 0.34}, {'connected_gene': 'GC19M047497', 'score': 0.26}]
chr19	GH19I047309	47309001	47316475	2.14	[{'connected_gene': 'C5AR1', 'score': 590.14}, {'connected_gene': 'DHX34', 'score': 65.45}, {'connected_gene': 'ZC3H4', 'score': 32.75}, {'connected_gene': 'C5AR2', 'score': 31.91}, {'connected_gene': 'NAPA', 'score': 17.67}, {'connected_gene': 'CCDC9', 'score': 15.23}, {'connected_gene': 'PPP5C', 'score': 10.14}, {'connected_gene': 'BBC3', 'score': 1.5}]
chr19	GH19I047323	47323201	47325400	1.15	[{'connected_gene': 'C5AR1', 'score': 27.85}, {'connected_gene': 'DHX34', 'score': 23.62}, {'connected_gene': 'ZC3H4', 'score': 17.77}, {'connected_gene': 'CCDC9', 'score': 11.05}, {'connected_gene': 'C5AR2', 'score': 10.41}, {'connected_gene': 'NAPA', 'score': 9.98}, {'connected_gene': 'ZNF541', 'score': 5.99}, {'connected_gene': 'BICRA', 'score': 1.74}]
chr19	GH19I047371	47371375	47371545	0.31	[{'connected_gene': 'C5AR1', 'score': 32.78}, {'connected_gene': 'ZC3H4', 'score': 20.94}, {'connected_gene': 'DHX34', 'score': 15.85}, {'connected_gene': 'NAPA', 'score': 9.58}, {'connected_gene': 'CCDC9', 'score': 6.75}, {'connected_gene': 'C5AR2', 'score': 6.34}, {'connected_gene': 'NOP53', 'score': 1.59}, {'connected_gene': 'BICRA', 'score': 1.42}, {'connected_gene': 'GC19P047388', 'score': 0.37}, {'connected_gene': 'GC19P047354', 'score': 0.37}, {'connected_gene': 'PIR41927', 'score': 0.37}]
chr19	GH19I047304	47304944	47305902	1.15	[{'connected_gene': 'BICRA', 'score': 10.32}, {'connected_gene': 'CCDC9', 'score': 6.04}, {'connected_gene': 'C5AR1', 'score': 0.37}, {'connected_gene': 'C5AR2', 'score': 0.31}]
chr19	GH19I047329	47329290	47332600	1.74	[{'connected_gene': 'C5AR2', 'score': 553.12}, {'connected_gene': 'NAPA', 'score': 12.23}, {'connected_gene': 'PPP5C', 'score': 10.14}, {'connected_gene': 'C5AR1', 'score': 4.86}, {'connected_gene': 'ZC3H4', 'score': 2.49}, {'connected_gene': 'DHX34', 'score': 2.17}, {'connected_gene': 'CCDC9', 'score': 1.97}, {'connected_gene': 'BICRA', 'score': 1.84}, {'connected_gene': 'NOP53', 'score': 1.28}]
chr19	GH19I047335	47335001	47338600	1.66	[{'connected_gene': 'C5AR2', 'score': 550.77}, {'connected_gene': 'SLC1A5', 'score': 12.57}, {'connected_gene': 'CCDC9', 'score': 10.23}, {'connected_gene': 'ZC3H4', 'score': 10.1}, {'connected_gene': 'DHX34', 'score': 7.16}, {'connected_gene': 'GC19P047346', 'score': 0.44}]
chr19	GH19I047383	47383001	47384200	1.24	[{'connected_gene': 'ZC3H4', 'score': 39.96}, {'connected_gene': 'DHX34', 'score': 27.18}, {'connected_gene': 'C5AR1', 'score': 22.06}, {'connected_gene': 'CCDC9', 'score': 14.8}, {'connected_gene': 'BICRA', 'score': 12.02}, {'connected_gene': 'NOP53-AS1', 'score': 11.19}, {'connected_gene': 'SNORD23', 'score': 9.75}, {'connected_gene': 'NAPA', 'score': 7.28}, {'connected_gene': 'C5AR2', 'score': 3.58}, {'connected_gene': 'NOP53', 'score': 1.38}, {'connected_gene': 'GC19P047388', 'score': 0.77}, {'connected_gene': 'GC19P047354', 'score': 0.29}, {'connected_gene': 'PIR41927', 'score': 0.29}]
chr19	GH19I047302	47302381	47302512	0.39	[{'connected_gene': 'ZC3H4', 'score': 14.78}, {'connected_gene': 'C5AR1', 'score': 13.73}, {'connected_gene': 'BICRA', 'score': 10.32}, {'connected_gene': 'DHX34', 'score': 9.94}, {'connected_gene': 'NAPA', 'score': 4.85}, {'connected_gene': 'CCDC9', 'score': 4.36}, {'connected_gene': 'C5AR2', 'score': 2.75}, {'connected_gene': 'NOP53', 'score': 1.19}]
chr19	GH19I047105	47105710	47114883	2.68	[{'connected_gene': 'ZC3H4', 'score': 618.89}, {'connected_gene': 'ENSG00000268810', 'score': 44.26}, {'connected_gene': 'BICRA', 'score': 32.41}, {'connected_gene': 'C5AR2', 'score': 32.07}, {'connected_gene': 'PRKD2', 'score': 25.22}, {'connected_gene': 'CCDC9', 'score': 25.19}, {'connected_gene': 'NOP53-AS1', 'score': 22.55}, {'connected_gene': 'SNORD23', 'score': 20.88}, {'connected_gene': 'ENSG00000268746', 'score': 20.42}, {'connected_gene': 'DHX34', 'score': 19.13}, {'connected_gene': 'EHD2', 'score': 13.25}, {'connected_gene': 'PNMA8A', 'score': 11.81}, {'connected_gene': 'TMEM160', 'score': 11.39}, {'connected_gene': 'PPP5D1', 'score': 11.12}, {'connected_gene': 'ENSG00000269124', 'score': 10.82}, {'connected_gene': 'C5AR1', 'score': 10.52}, {'connected_gene': 'INAFM1', 'score': 10.36}, {'connected_gene': 'NOP53', 'score': 10.1}, {'connected_gene': 'BBC3', 'score': 6.52}, {'connected_gene': 'NAPA', 'score': 6.5}, {'connected_gene': 'SAE1', 'score': 5.53}, {'connected_gene': 'STRN4', 'score': 1.59}, {'connected_gene': 'PTGIR', 'score': 1.47}, {'connected_gene': 'GC19P047078', 'score': 0.29}]
chr19	GH19I047321	47321601	47322200	0.54	[{'connected_gene': 'PPP5D1', 'score': 10.39}, {'connected_gene': 'C5AR2', 'score': 0.44}, {'connected_gene': 'C5AR1', 'score': 0.29}]
chr19	GH19I047388	47388401	47390356	1	[{'connected_gene': 'GC19P047388', 'score': 550.77}, {'connected_gene': 'DHX34', 'score': 47.5}, {'connected_gene': 'C5AR1', 'score': 29.87}, {'connected_gene': 'C5AR2', 'score': 18.55}, {'connected_gene': 'ZC3H4', 'score': 16.69}, {'connected_gene': 'CCDC9', 'score': 10.13}, {'connected_gene': 'NAPA', 'score': 6.93}, {'connected_gene': 'BICRA', 'score': 2.07}, {'connected_gene': 'BBC3', 'score': 1.16}, {'connected_gene': 'MEIS3', 'score': 0.29}]
chr19	GH19I047387	47387146	47387381	0.22	[{'connected_gene': 'GC19P047388', 'score': 550.77}, {'connected_gene': 'DHX34', 'score': 4.59}, {'connected_gene': 'C5AR2', 'score': 4.53}, {'connected_gene': 'C5AR1', 'score': 3.67}, {'connected_gene': 'ZC3H4', 'score': 2.11}, {'connected_gene': 'CCDC9', 'score': 2.0}, {'connected_gene': 'GC19P047354', 'score': 0.29}, {'connected_gene': 'PIR41927', 'score': 0.29}]
chr19	GH19I047351	47351644	47352200	1.26	[{'connected_gene': 'GC19P047354', 'score': 550.77}, {'connected_gene': 'PIR41927', 'score': 550.77}, {'connected_gene': 'C5AR2', 'score': 23.24}, {'connected_gene': 'DHX34', 'score': 20.28}, {'connected_gene': 'ZC3H4', 'score': 18.08}, {'connected_gene': 'C5AR1', 'score': 14.18}, {'connected_gene': 'ENSG00000268810', 'score': 13.95}, {'connected_gene': 'NOP53-AS1', 'score': 13.18}, {'connected_gene': 'BICRA', 'score': 13.08}, {'connected_gene': 'MEIS3', 'score': 6.33}, {'connected_gene': 'CCDC9', 'score': 5.74}, {'connected_gene': 'NAPA', 'score': 2.56}, {'connected_gene': 'BBC3', 'score': 1.3}]
chr19	GH19I047271	47271984	47276709	2.61	[{'connected_gene': 'PIR46471', 'score': 550.77}, {'connected_gene': 'INAFM1', 'score': 550.77}, {'connected_gene': 'CCDC9', 'score': 32.48}, {'connected_gene': 'BICRA', 'score': 17.28}, {'connected_gene': 'ZC3H4', 'score': 15.24}, {'connected_gene': 'ENSG00000268810', 'score': 10.94}, {'connected_gene': 'C5AR2', 'score': 6.97}, {'connected_gene': 'DHX34', 'score': 5.28}, {'connected_gene': 'C5AR1', 'score': 4.38}, {'connected_gene': 'HIF3A', 'score': 4.31}, {'connected_gene': 'BBC3', 'score': 4.21}, {'connected_gene': 'NOP53', 'score': 3.54}, {'connected_gene': 'NAPA', 'score': 1.63}]