PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr7	38948780	38948805	CAGE_peak_1_at_VPS41_5end
chr7	38969150	38969169	CAGE_peak_2_at_VPS41_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I039465	39465082	39465251	0.78	[{'connected_gene': 'VPS41', 'score': 9.92}, {'connected_gene': 'YAE1D1', 'score': 9.89}, {'connected_gene': 'LOC105375240', 'score': 9.89}, {'connected_gene': 'FAM183BP', 'score': 4.4}, {'connected_gene': 'LOC105375238', 'score': 0.44}, {'connected_gene': 'POU6F2-AS1', 'score': 0.22}, {'connected_gene': 'POU6F2', 'score': 0.04}]
chr7	GH07I038797	38797021	38797170	0.56	[{'connected_gene': 'VPS41', 'score': 10.25}, {'connected_gene': 'YAE1D1', 'score': 10.04}, {'connected_gene': 'LOC105375240', 'score': 10.04}, {'connected_gene': 'FAM183BP', 'score': 9.47}, {'connected_gene': 'GC07M038790', 'score': 0.77}, {'connected_gene': 'GC07P038849', 'score': 0.23}, {'connected_gene': 'GC07P038746', 'score': 0.23}]
chr7	GH07I038846	38846341	38846530	0.74	[{'connected_gene': 'VPS41', 'score': 12.96}, {'connected_gene': 'YAE1D1', 'score': 9.45}, {'connected_gene': 'LOC105375240', 'score': 9.45}, {'connected_gene': 'GC07P038849', 'score': 0.77}, {'connected_gene': 'GC07M038790', 'score': 0.23}, {'connected_gene': 'GC07P038746', 'score': 0.15}]
chr7	GH07I038840	38840635	38842034	0.63	[{'connected_gene': 'VPS41', 'score': 9.86}, {'connected_gene': 'YAE1D1', 'score': 9.45}, {'connected_gene': 'LOC105375240', 'score': 9.45}, {'connected_gene': 'GC07P038849', 'score': 0.44}, {'connected_gene': 'GC07M038790', 'score': 0.25}, {'connected_gene': 'GC07P038746', 'score': 0.16}]
chr7	GH07I038673	38673556	38674372	0.58	[{'connected_gene': 'VPS41', 'score': 4.25}, {'connected_gene': 'FAM183BP', 'score': 0.39}, {'connected_gene': 'KRT8P20', 'score': 0.37}]
chr7	GH07I038932	38932681	38932830	0.67	[{'connected_gene': 'VPS41', 'score': 550.77}, {'connected_gene': 'POU6F2', 'score': 0.25}, {'connected_gene': 'GC07P038746', 'score': 0.09}]
chr7	GH07I038908	38908168	38909810	2.01	[{'connected_gene': 'VPS41', 'score': 560.54}, {'connected_gene': 'CICP22', 'score': 11.96}, {'connected_gene': 'LOC100101126', 'score': 10.85}, {'connected_gene': 'ENSG00000228554', 'score': 9.85}, {'connected_gene': 'GC07P038849', 'score': 0.22}, {'connected_gene': 'GC07P038746', 'score': 0.1}]
chr7	GH07I038929	38929601	38930001	0.63	[{'connected_gene': 'VPS41', 'score': 0.77}, {'connected_gene': 'GC07P038849', 'score': 0.18}, {'connected_gene': 'GC07P038746', 'score': 0.09}]
chr7	GH07I038855	38855401	38855800	0.49	[{'connected_gene': 'VPS41', 'score': 10.94}, {'connected_gene': 'GC07P038849', 'score': 0.44}, {'connected_gene': 'GC07P038746', 'score': 0.14}]
chr7	GH07I038927	38927801	38928200	0.31	[{'connected_gene': 'VPS41', 'score': 0.77}, {'connected_gene': 'GC07P038849', 'score': 0.18}, {'connected_gene': 'GC07P038746', 'score': 0.09}]
chr7	GH07I038907	38907202	38907600	0.31	[{'connected_gene': 'VPS41', 'score': 4.7}, {'connected_gene': 'GC07P038849', 'score': 0.22}, {'connected_gene': 'GC07P038746', 'score': 0.1}]
chr7	GH07I038856	38856000	38856201	0.57	[{'connected_gene': 'VPS41', 'score': 6.02}, {'connected_gene': 'GC07P038849', 'score': 0.44}, {'connected_gene': 'GC07P038746', 'score': 0.14}]
chr7	GH07I038798	38798023	38799590	0.38	[{'connected_gene': 'VPS41', 'score': 6.35}, {'connected_gene': 'GC07M038790', 'score': 0.77}, {'connected_gene': 'GC07P038849', 'score': 0.23}, {'connected_gene': 'GC07P038746', 'score': 0.23}]
chr7	GH07I038940	38940485	38940504	0.22	[{'connected_gene': 'POU6F2', 'score': 11.19}, {'connected_gene': 'VPS41', 'score': 0.44}, {'connected_gene': 'GC07P038746', 'score': 0.08}]
chr7	GH07I038977	38977865	38977924	0.79	[{'connected_gene': 'POU6F2', 'score': 550.77}, {'connected_gene': 'VPS41', 'score': 0.25}]
chr7	GH07I038976	38976201	38976350	0.38	[{'connected_gene': 'POU6F2', 'score': 550.77}, {'connected_gene': 'VPS41', 'score': 0.26}]
chr7	GH07I038878	38878801	38878950	0.31	[{'connected_gene': 'GC07P038849', 'score': 0.31}, {'connected_gene': 'VPS41', 'score': 0.23}, {'connected_gene': 'GC07P038746', 'score': 0.12}]
chr7	GH07I038782	38782041	38782250	0.2	[{'connected_gene': 'GC07M038790', 'score': 0.39}, {'connected_gene': 'GC07P038746', 'score': 0.28}, {'connected_gene': 'VPS41', 'score': 0.1}]
chr7	GH07I038863	38863241	38864588	1.1	[{'connected_gene': 'GC07P038849', 'score': 0.39}, {'connected_gene': 'VPS41', 'score': 0.2}, {'connected_gene': 'GC07P038746', 'score': 0.13}]
chr7	GH07I038858	38858124	38859104	0.43	[{'connected_gene': 'GC07P038849', 'score': 0.44}, {'connected_gene': 'VPS41', 'score': 0.19}, {'connected_gene': 'GC07P038746', 'score': 0.14}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000310301	[[38762562, 38765926], [38766508, 38766588], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785213], [38791775, 38791913], [38794301, 38794352], [38794494, 38794536], [38796437, 38796582], [38797953, 38798081], [38803054, 38803147], [38805179, 38805261], [38807136, 38807198], [38810797, 38810854], [38812121, 38812237], [38813714, 38813844], [38816278, 38816376], [38829400, 38829467], [38835064, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948829]]	[[38765845, 38765926], [38766508, 38766588], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785213], [38791775, 38791913], [38794301, 38794352], [38794494, 38794536], [38796437, 38796582], [38797953, 38798081], [38803054, 38803147], [38805179, 38805261], [38807136, 38807198], [38810797, 38810854], [38812121, 38812237], [38813714, 38813844], [38816278, 38816376], [38829400, 38829467], [38835064, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948774]]
ENST00000395969	[[38765154, 38765926], [38766508, 38766588], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785213], [38791775, 38791913], [38794301, 38794352], [38794494, 38794536], [38796437, 38796582], [38797953, 38798081], [38803054, 38803147], [38805179, 38805261], [38807136, 38807198], [38810797, 38810854], [38812121, 38812237], [38813714, 38813844], [38816278, 38816376], [38829400, 38829467], [38835064, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948774]]	[[38765845, 38765926], [38766508, 38766588], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785213], [38791775, 38791913], [38794301, 38794352], [38794494, 38794536], [38796437, 38796582], [38797953, 38798081], [38803054, 38803147], [38805179, 38805261], [38807136, 38807198], [38810797, 38810854], [38812121, 38812237], [38813714, 38813844], [38816278, 38816376], [38829400, 38829467], [38835064, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948774]]
ENST00000265745	[[38835141, 38835211], [38836014, 38836126], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948791]]	[[38836066, 38836126], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948774]]
ENST00000414632	[[38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38948753, 38948791]]	[[38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38948753, 38948774]]
ENST00000418457	[[38857402, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38969071, 38969160]]	[[38857402, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908763]]
ENST00000457055	[[38860817, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38971877, 38971994]]	[[38860817, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908763]]
ENST00000490924	[[38765708, 38765926], [38766508, 38766786]]	None
ENST00000448833	[[38765835, 38765926], [38766508, 38766588], [38767940, 38768034], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785181]]	[[38768029, 38768034], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785181]]
ENST00000482217	[[38765918, 38765926], [38766508, 38766588], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785598]]	None
ENST00000439468	[[38780883, 38780951], [38781580, 38781721], [38783001, 38783142], [38785158, 38785162]]	[[38780907, 38780951], [38781580, 38781721], [38783001, 38783142], [38785158, 38785162]]
ENST00000462429	[[38798001, 38798081], [38803054, 38803147], [38805179, 38805353]]	None
ENST00000466017	[[38812198, 38812237], [38813714, 38813844], [38816278, 38816376], [38829400, 38829467], [38835064, 38835211], [38836531, 38836641]]	None
ENST00000485955	[[38813757, 38813844], [38814788, 38815272]]	None
ENST00000413141	[[38835091, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38870815, 38870946]]	[[38835091, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38870815, 38870839]]
NM_014396	[[38763542, 38765926], [38766508, 38766588], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785213], [38791775, 38791913], [38794301, 38794352], [38794494, 38794536], [38796437, 38796582], [38797953, 38798081], [38803054, 38803147], [38805179, 38805261], [38807136, 38807198], [38810797, 38810854], [38812121, 38812237], [38813714, 38813844], [38816278, 38816376], [38829400, 38829467], [38835064, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948800]]	[[38765845, 38765926], [38766508, 38766588], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785213], [38791775, 38791913], [38794301, 38794352], [38794494, 38794536], [38796437, 38796582], [38797953, 38798081], [38803054, 38803147], [38805179, 38805261], [38807136, 38807198], [38810797, 38810854], [38812121, 38812237], [38813714, 38813844], [38816278, 38816376], [38829400, 38829467], [38835064, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38869853, 38869928], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948774]]
NM_080631	[[38763542, 38765926], [38766508, 38766588], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785213], [38791775, 38791913], [38794301, 38794352], [38794494, 38794536], [38796437, 38796582], [38797953, 38798081], [38803054, 38803147], [38805179, 38805261], [38807136, 38807198], [38810797, 38810854], [38812121, 38812237], [38813714, 38813844], [38816278, 38816376], [38829400, 38829467], [38835064, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948800]]	[[38765845, 38765926], [38766508, 38766588], [38768141, 38768186], [38768291, 38768391], [38781584, 38781721], [38783001, 38783142], [38785158, 38785213], [38791775, 38791913], [38794301, 38794352], [38794494, 38794536], [38796437, 38796582], [38797953, 38798081], [38803054, 38803147], [38805179, 38805261], [38807136, 38807198], [38810797, 38810854], [38812121, 38812237], [38813714, 38813844], [38816278, 38816376], [38829400, 38829467], [38835064, 38835211], [38836344, 38836464], [38857416, 38857482], [38860802, 38860865], [38902144, 38902222], [38908745, 38908853], [38937690, 38937729], [38948753, 38948774]]