PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361298	[[102631267, 102631541], [102631955, 102632034], [102632437, 102633005]]	[[102632449, 102632755]]
ENST00000372645	[[102631322, 102631541], [102631955, 102632034], [102632390, 102633005]]	[[102632419, 102632755]]
ENST00000372635	[[102631334, 102631541], [102632390, 102632988]]	[[102632419, 102632755]]
ENST00000372634	[[102631843, 102632034], [102632437, 102632999]]	[[102632449, 102632755]]
ENST00000299872	[[102632108, 102632992]]	[[102632419, 102632755]]
NM_001282674	[[102631250, 102631541], [102632390, 102633092]]	[[102631330, 102631541], [102632390, 102632755]]
NM_206917	[[102631250, 102631541], [102631955, 102632034], [102632437, 102633092]]	[[102632449, 102632755]]
NM_206915	[[102631250, 102631541], [102631955, 102632034], [102632390, 102633092]]	[[102632419, 102632755]]
NM_014380	[[102632108, 102633092]]	[[102632419, 102632755]]

Promoter

Chrom	Start	End	Description
chrX	102631233	102631245	CAGE_peak_6_at_NGFRAP1_5end
chrX	102631248	102631329	CAGE_peak_3_at_NGFRAP1_5end
chrX	102631431	102631442	CAGE_peak_2_at_NGFRAP1_5end
chrX	102631457	102631472	CAGE_peak_1_at_NGFRAP1_5end
chrX	102631951	102631988	CAGE_peak_5_at_NGFRAP1_5end
chrX	102632720	102632761	CAGE_peak_8_at_NGFRAP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chrX	GH0XI103151	103151637	103152980	1.15	[{'connected_gene': 'GPRASP1', 'score': 42.63}, {'connected_gene': 'BEX4', 'score': 32.18}, {'connected_gene': 'TCEAL3', 'score': 23.23}, {'connected_gene': 'ELF2P1', 'score': 20.56}, {'connected_gene': 'TMSB15B', 'score': 13.65}, {'connected_gene': 'ZCCHC18', 'score': 13.12}, {'connected_gene': 'GPRASP2', 'score': 13.09}, {'connected_gene': 'BEX3', 'score': 13.0}, {'connected_gene': 'TCEAL7', 'score': 12.84}, {'connected_gene': 'TCEAL1', 'score': 12.83}, {'connected_gene': 'BHLHB9', 'score': 12.51}, {'connected_gene': 'MORF4L2-AS1', 'score': 12.38}, {'connected_gene': 'ARMCX5-GPRASP2', 'score': 12.29}, {'connected_gene': 'RAB9B', 'score': 11.92}, {'connected_gene': 'TCEAL5', 'score': 11.23}, {'connected_gene': 'ARMCX5', 'score': 11.11}, {'connected_gene': 'TCEAL8', 'score': 10.51}, {'connected_gene': 'MORF4L2', 'score': 9.78}, {'connected_gene': 'LINC00630', 'score': 9.74}, {'connected_gene': 'TCEAL4', 'score': 9.72}, {'connected_gene': 'BEX1', 'score': 9.63}, {'connected_gene': 'GC0XM103156', 'score': 0.77}, {'connected_gene': 'PIR57742', 'score': 0.28}]
chrX	GH0XI103607	103607324	103609181	1.74	[{'connected_gene': 'TCEAL3', 'score': 550.77}, {'connected_gene': 'GC0XM103601', 'score': 550.77}, {'connected_gene': 'BEX3', 'score': 4.09}, {'connected_gene': 'TCEAL3-AS1', 'score': 0.37}, {'connected_gene': 'LOC105373302', 'score': 0.34}]
chrX	GH0XI103359	103359733	103360746	0.74	[{'connected_gene': 'TCEAL7', 'score': 12.71}, {'connected_gene': 'MORF4L2-AS1', 'score': 10.23}, {'connected_gene': 'TCEAL9', 'score': 0.77}, {'connected_gene': 'BEX3', 'score': 0.37}]
chrX	GH0XI103396	103396032	103399548	1.18	[{'connected_gene': 'BEX4', 'score': 15.49}, {'connected_gene': 'TCEAL9', 'score': 12.49}, {'connected_gene': 'TCEAL4', 'score': 3.92}, {'connected_gene': 'ENSG00000281091', 'score': 0.44}, {'connected_gene': 'LL0XNC01-250H12.3', 'score': 0.44}, {'connected_gene': 'BEX3', 'score': 0.34}]
chrX	GH0XI103446	103446257	103447682	0.43	[{'connected_gene': 'BEX4', 'score': 16.19}, {'connected_gene': 'BEX3', 'score': 13.13}, {'connected_gene': 'PIR37216', 'score': 0.37}, {'connected_gene': 'PIR62779', 'score': 0.31}, {'connected_gene': 'LL0XNC01-250H12.3', 'score': 0.26}]
chrX	GH0XI103441	103441548	103443254	0.58	[{'connected_gene': 'BEX4', 'score': 16.2}, {'connected_gene': 'BEX3', 'score': 13.14}, {'connected_gene': 'ENSG00000234405', 'score': 11.19}, {'connected_gene': 'LOC100420653', 'score': 11.13}, {'connected_gene': 'TCEAL8', 'score': 11.12}, {'connected_gene': 'PIR37216', 'score': 0.37}, {'connected_gene': 'PIR62779', 'score': 0.29}, {'connected_gene': 'LL0XNC01-250H12.3', 'score': 0.28}]
chrX	GH0XI103438	103438893	103441515	0.54	[{'connected_gene': 'BEX4', 'score': 16.2}, {'connected_gene': 'BEX3', 'score': 12.4}, {'connected_gene': 'ENSG00000234405', 'score': 11.19}, {'connected_gene': 'LOC100420653', 'score': 11.13}, {'connected_gene': 'TCEAL8', 'score': 11.12}, {'connected_gene': 'PIR37216', 'score': 0.39}, {'connected_gene': 'PIR62779', 'score': 0.29}, {'connected_gene': 'LL0XNC01-250H12.3', 'score': 0.28}]
chrX	GH0XI103690	103690084	103697152	0.57	[{'connected_gene': 'PLP1', 'score': 13.07}, {'connected_gene': 'TCEAL3', 'score': 12.59}, {'connected_gene': 'BEX4', 'score': 9.62}, {'connected_gene': 'BEX2', 'score': 7.22}, {'connected_gene': 'ZCCHC18', 'score': 4.35}, {'connected_gene': 'BEX3', 'score': 3.84}, {'connected_gene': 'MORF4L2', 'score': 0.44}, {'connected_gene': 'MORF4L2-AS1', 'score': 0.44}, {'connected_gene': 'TMEM31', 'score': 0.37}]
chrX	GH0XI103355	103355593	103358000	1.86	[{'connected_gene': 'TCEAL9', 'score': 550.77}, {'connected_gene': 'BEX4', 'score': 4.68}, {'connected_gene': 'BEX3', 'score': 0.37}]
chrX	GH0XI103464	103464003	103465198	0.85	[{'connected_gene': 'TCEAL9', 'score': 13.47}, {'connected_gene': 'BEX3', 'score': 12.48}, {'connected_gene': 'RAB40A', 'score': 10.48}, {'connected_gene': 'PIR62779', 'score': 0.44}, {'connected_gene': 'PIR37216', 'score': 0.28}, {'connected_gene': 'LL0XNC01-250H12.3', 'score': 0.22}]
chrX	GH0XI103423	103423397	103425042	0.6	[{'connected_gene': 'MORF4L2-AS1', 'score': 27.9}, {'connected_gene': 'BEX4', 'score': 23.24}, {'connected_gene': 'LINC00630', 'score': 12.98}, {'connected_gene': 'BEX3', 'score': 12.21}, {'connected_gene': 'ARMCX5', 'score': 11.75}, {'connected_gene': 'ENSG00000239407', 'score': 10.77}, {'connected_gene': 'PIR37216', 'score': 0.77}, {'connected_gene': 'LL0XNC01-250H12.3', 'score': 0.37}, {'connected_gene': 'ENSG00000281091', 'score': 0.37}]
chrX	GH0XI103375	103375926	103377992	1.84	[{'connected_gene': 'BEX3', 'score': 554.77}, {'connected_gene': 'ENSG00000281091', 'score': 0.31}, {'connected_gene': 'LL0XNC01-250H12.3', 'score': 0.31}]
chrX	GH0XI103403	103403994	103405600	1.35	[{'connected_gene': 'ENSG00000281091', 'score': 550.77}, {'connected_gene': 'LL0XNC01-250H12.3', 'score': 550.77}, {'connected_gene': 'BEX4', 'score': 23.24}, {'connected_gene': 'TCEAL5', 'score': 12.23}, {'connected_gene': 'BEX3', 'score': 4.31}, {'connected_gene': 'PIR37216', 'score': 0.34}]