PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000431018	[[186353757, 186354017], [186362539, 186362709], [186364036, 186364138], [186369006, 186369065]]	[[186362559, 186362709], [186364036, 186364138], [186369006, 186369065]]
ENST00000450521	[[186353757, 186354017], [186358248, 186358474], [186358818, 186358929], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]	[[186358249, 186358474], [186358818, 186358929], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]
ENST00000539949	[[186353760, 186354017], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370879]]	[[186362559, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]
ENST00000382134	[[186358148, 186358478], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]	[[186358249, 186358478], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]
ENST00000265029	[[186358148, 186358474], [186358818, 186358929], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370797]]	[[186358249, 186358474], [186358818, 186358929], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]
ENST00000435961	[[186358180, 186358474], [186358818, 186358929], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370930]]	[[186358249, 186358474], [186358818, 186358929], [186362539, 186362563]]
ENST00000420570	[[186358195, 186358478], [186358818, 186358929], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370774]]	[[186358249, 186358478], [186358818, 186358868]]
ENST00000488561	[[186358229, 186358474], [186362539, 186362701]]	None
ENST00000382136	[[186358247, 186358474], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]	[[186358249, 186358474], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]
NM_001308077	[[186358148, 186358474], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370797]]	[[186358249, 186358474], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]
NM_014375	[[186358148, 186358474], [186358818, 186358929], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370797]]	[[186358249, 186358474], [186358818, 186358929], [186360259, 186360347], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]
NM_001308079	[[186358148, 186358478], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370797]]	[[186358249, 186358478], [186362539, 186362709], [186364036, 186364138], [186369006, 186369090], [186370051, 186370420]]

Promoter

Chrom	Start	End	Description
chr3	186353756	186353761	CAGE_peak_3_at_FETUB_5end
chr3	186358116	186358121	CAGE_peak_4_at_FETUB_5end
chr3	186358148	186358149	CAGE_peak_7_at_FETUB_5end
chr3	186358151	186358198	CAGE_peak_1_at_FETUB_5end
chr3	186358200	186358211	CAGE_peak_2_at_FETUB_5end
chr3	186358410	186358420	CAGE_peak_5_at_FETUB_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I186757	186757010	186758517	0.52	[{'connected_gene': 'KNG1', 'score': 11.43}, {'connected_gene': 'ENSG00000200418', 'score': 11.11}, {'connected_gene': 'SNORA63', 'score': 11.11}, {'connected_gene': 'EIF4A2', 'score': 11.11}, {'connected_gene': 'SNORA81', 'score': 11.11}, {'connected_gene': 'RFC4', 'score': 11.05}, {'connected_gene': 'FETUB', 'score': 10.61}, {'connected_gene': 'AHSG', 'score': 10.41}, {'connected_gene': 'ENSG00000231724', 'score': 10.29}, {'connected_gene': 'HRG', 'score': 10.21}, {'connected_gene': 'PSMD10P2', 'score': 0.77}, {'connected_gene': 'LOC105374259', 'score': 0.77}, {'connected_gene': 'LOC105374258', 'score': 0.37}]
chr3	GH03I186663	186663332	186665281	0.49	[{'connected_gene': 'KNG1', 'score': 10.22}, {'connected_gene': 'FETUB', 'score': 10.14}, {'connected_gene': 'AHSG', 'score': 10.13}, {'connected_gene': 'HRG', 'score': 0.77}, {'connected_gene': 'LOC100533663', 'score': 0.34}, {'connected_gene': 'LOC105374258', 'score': 0.14}]
chr3	GH03I186682	186682468	186683690	0.64	[{'connected_gene': 'KNG1', 'score': 11.12}, {'connected_gene': 'FETUB', 'score': 10.26}, {'connected_gene': 'LOC100533663', 'score': 0.77}, {'connected_gene': 'HRG', 'score': 0.34}, {'connected_gene': 'LOC105374258', 'score': 0.17}]
chr3	GH03I186593	186593409	186595286	0.76	[{'connected_gene': 'FETUB', 'score': 10.4}, {'connected_gene': 'KNG1', 'score': 10.35}, {'connected_gene': 'RFC4', 'score': 9.93}, {'connected_gene': 'ENSG00000231724', 'score': 9.8}, {'connected_gene': 'HRG', 'score': 9.75}, {'connected_gene': 'DNAJB11', 'score': 4.76}, {'connected_gene': 'LOC100287402', 'score': 0.77}, {'connected_gene': 'ENSG00000283149', 'score': 0.39}, {'connected_gene': 'LOC105374258', 'score': 0.1}]
chr3	GH03I186597	186597972	186601328	0.93	[{'connected_gene': 'FETUB', 'score': 11.03}, {'connected_gene': 'KNG1', 'score': 10.32}, {'connected_gene': 'HRG', 'score': 10.25}, {'connected_gene': 'ENSG00000283390', 'score': 0.77}, {'connected_gene': 'AHSG', 'score': 0.39}, {'connected_gene': 'LOC105374258', 'score': 0.09}]
chr3	GH03I186669	186669161	186670460	0.69	[{'connected_gene': 'FETUB', 'score': 11.35}, {'connected_gene': 'KNG1', 'score': 11.2}, {'connected_gene': 'AHSG', 'score': 10.15}, {'connected_gene': 'HRG', 'score': 0.44}, {'connected_gene': 'LOC100533663', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.15}]
chr3	GH03I186640	186640006	186641105	1.09	[{'connected_gene': 'FETUB', 'score': 567.29}, {'connected_gene': 'HRG', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.12}]
chr3	GH03I186588	186588296	186591531	1.07	[{'connected_gene': 'AHSG', 'score': 12.3}, {'connected_gene': 'SNORD2', 'score': 10.75}, {'connected_gene': 'EIF4A2', 'score': 10.75}, {'connected_gene': 'ENSG00000200418', 'score': 10.75}, {'connected_gene': 'SNORA63', 'score': 10.75}, {'connected_gene': 'SNORA81', 'score': 10.75}, {'connected_gene': 'RFC4', 'score': 10.4}, {'connected_gene': 'ENSG00000231724', 'score': 10.4}, {'connected_gene': 'FETUB', 'score': 10.38}, {'connected_gene': 'KNG1', 'score': 10.35}, {'connected_gene': 'HRG', 'score': 10.04}, {'connected_gene': 'DNAJB11', 'score': 5.51}, {'connected_gene': 'CRYGS', 'score': 5.07}, {'connected_gene': 'LOC100287402', 'score': 0.44}, {'connected_gene': 'ENSG00000283149', 'score': 0.44}, {'connected_gene': 'LOC105374258', 'score': 0.09}]
chr3	GH03I186653	186653883	186655003	0.49	[{'connected_gene': 'AHSG', 'score': 10.83}, {'connected_gene': 'KNG1', 'score': 10.39}, {'connected_gene': 'HRG', 'score': 0.44}, {'connected_gene': 'FETUB', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.13}]
chr3	GH03I186652	186652883	186653816	0.59	[{'connected_gene': 'AHSG', 'score': 10.83}, {'connected_gene': 'KNG1', 'score': 10.39}, {'connected_gene': 'HRG', 'score': 0.44}, {'connected_gene': 'FETUB', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.13}]
chr3	GH03I186752	186752212	186756063	1.12	[{'connected_gene': 'LOC105374259', 'score': 550.77}, {'connected_gene': 'KNG1', 'score': 10.98}, {'connected_gene': 'EIF4A2', 'score': 10.98}, {'connected_gene': 'ENSG00000200418', 'score': 10.96}, {'connected_gene': 'SNORA63', 'score': 10.96}, {'connected_gene': 'SNORA81', 'score': 10.96}, {'connected_gene': 'RFC4', 'score': 10.69}, {'connected_gene': 'FETUB', 'score': 10.61}, {'connected_gene': 'ENSG00000231724', 'score': 10.17}, {'connected_gene': 'AHSG', 'score': 9.94}, {'connected_gene': 'HRG', 'score': 9.72}, {'connected_gene': 'PSMD10P2', 'score': 0.44}, {'connected_gene': 'LOC105374258', 'score': 0.37}]
chr3	GH03I186596	186596801	186597200	0.93	[{'connected_gene': 'LOC100287402', 'score': 550.77}, {'connected_gene': 'ENSG00000283390', 'score': 550.77}, {'connected_gene': 'FETUB', 'score': 10.41}, {'connected_gene': 'KNG1', 'score': 10.35}, {'connected_gene': 'HRG', 'score': 10.26}, {'connected_gene': 'RFC4', 'score': 9.93}, {'connected_gene': 'ENSG00000231724', 'score': 9.8}, {'connected_gene': 'AHSG', 'score': 0.37}, {'connected_gene': 'ENSG00000283149', 'score': 0.37}, {'connected_gene': 'LOC105374258', 'score': 0.1}]