PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000439649	[[117816443, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031787], [118032674, 118032796]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]
ENST00000369236	[[117822952, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031794]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]
ENST00000355422	[[117823274, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031787], [118032674, 118032979]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]
ENST00000544592	[[117823726, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118015145, 118015307]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118015145, 118015215]]
ENST00000369234	[[117823911, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031787], [118032379, 118032545]]	[[117823911, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]
ENST00000490345	[[118031515, 118031787], [118032072, 118032155]]	None
NM_001348099	[[117816435, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118015145, 118015307]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118015145, 118015215]]
NM_145793	[[117816435, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031819]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]
NM_001348098	[[117816435, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031787], [118032072, 118032165]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]
NM_001348096	[[117816435, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031787], [118032379, 118032521]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]
NM_005264	[[117816435, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031787], [118032674, 118033157]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]
NM_001348097	[[117816435, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031787], [118032674, 118033157]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [117971142, 117971157], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]
NM_001145453	[[117816435, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031787], [118032674, 118033157]]	[[117823908, 117824055], [117825083, 117825137], [117849251, 117849433], [117853212, 117853347], [117856165, 117856275], [117884731, 117885068], [118029014, 118029098], [118030333, 118030627], [118031501, 118031541]]

Promoter

Chrom	Start	End	Description
chr10	117820754	117820758	CAGE_peak_8_at_GFRA1_5end
chr10	118031671	118031683	CAGE_peak_9_at_GFRA1_5end
chr10	118031691	118031706	CAGE_peak_5_at_GFRA1_5end
chr10	118031730	118031758	CAGE_peak_1_at_GFRA1_5end
chr10	118031778	118031792	CAGE_peak_7_at_GFRA1_5end
chr10	118031798	118031838	CAGE_peak_4_at_GFRA1_5end
chr10	118032133	118032181	CAGE_peak_2_at_GFRA1_5end
chr10	118032697	118032725	CAGE_peak_3_at_GFRA1_5end
chr10	118033119	118033132	CAGE_peak_10_at_GFRA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I116218	116218505	116219339	0.2	[{'connected_gene': 'PNLIPRP1', 'score': 4.63}, {'connected_gene': 'GFRA1', 'score': 0.23}, {'connected_gene': 'GC10M115985', 'score': 0.13}]
chr10	GH10I116269	116269742	116275424	2.16	[{'connected_gene': 'GFRA1', 'score': 555.32}, {'connected_gene': 'HSPA12A', 'score': 5.52}, {'connected_gene': 'GC10M115985', 'score': 0.1}]
chr10	GH10I116296	116296013	116296915	0.38	[{'connected_gene': 'GFRA1', 'score': 12.12}, {'connected_gene': 'C10orf82', 'score': 4.67}, {'connected_gene': 'GC10P116277', 'score': 0.37}, {'connected_gene': 'CCDC172', 'score': 0.31}]
chr10	GH10I116044	116044562	116045392	0.59	[{'connected_gene': 'GFRA1', 'score': 5.19}, {'connected_gene': 'GC10M115985', 'score': 0.23}, {'connected_gene': 'GC10M115974', 'score': 0.2}]
chr10	GH10I116189	116189905	116191498	0.57	[{'connected_gene': 'GFRA1', 'score': 0.18}, {'connected_gene': 'GC10M115985', 'score': 0.15}]
chr10	GH10I116204	116204517	116205078	0.2	[{'connected_gene': 'GFRA1', 'score': 0.2}, {'connected_gene': 'GC10M115985', 'score': 0.14}]
chr10	GH10I116171	116171029	116171178	0.7	[{'connected_gene': 'GFRA1', 'score': 12.51}, {'connected_gene': 'GC10M115985', 'score': 0.18}]
chr10	GH10I116196	116196848	116204236	0.59	[{'connected_gene': 'GFRA1', 'score': 0.19}, {'connected_gene': 'GC10M115985', 'score': 0.15}]
chr10	GH10I116192	116192009	116193075	0.2	[{'connected_gene': 'GFRA1', 'score': 0.18}, {'connected_gene': 'GC10M115985', 'score': 0.15}]
chr10	GH10I116205	116205681	116206628	0.2	[{'connected_gene': 'GFRA1', 'score': 0.2}, {'connected_gene': 'GC10M115985', 'score': 0.14}]
chr10	GH10I116210	116210169	116211632	0.76	[{'connected_gene': 'GFRA1', 'score': 0.21}, {'connected_gene': 'GC10M115985', 'score': 0.13}]
chr10	GH10I116242	116242149	116242298	0.2	[{'connected_gene': 'GFRA1', 'score': 0.29}, {'connected_gene': 'GC10M115985', 'score': 0.11}]
chr10	GH10I116253	116253809	116253958	0.2	[{'connected_gene': 'GFRA1', 'score': 0.37}, {'connected_gene': 'GC10M115985', 'score': 0.1}]
chr10	GH10I116194	116194435	116195605	0.54	[{'connected_gene': 'GFRA1', 'score': 8.38}, {'connected_gene': 'GC10M115985', 'score': 0.15}]
chr10	GH10I116211	116211769	116211938	0.89	[{'connected_gene': 'GFRA1', 'score': 0.21}, {'connected_gene': 'GC10M115985', 'score': 0.13}]
chr10	GH10I116240	116240975	116242016	0.2	[{'connected_gene': 'GFRA1', 'score': 0.29}, {'connected_gene': 'GC10M115985', 'score': 0.11}]
chr10	GH10I116254	116254288	116255870	0.38	[{'connected_gene': 'GFRA1', 'score': 0.37}, {'connected_gene': 'GC10M115985', 'score': 0.1}]
chr10	GH10I116216	116216698	116217638	0.6	[{'connected_gene': 'GFRA1', 'score': 0.22}, {'connected_gene': 'GC10M115985', 'score': 0.13}]
chr10	GH10I116212	116212458	116214709	0.38	[{'connected_gene': 'GFRA1', 'score': 0.21}, {'connected_gene': 'GC10M115985', 'score': 0.13}]
chr10	GH10I116214	116214946	116216646	0.31	[{'connected_gene': 'GFRA1', 'score': 0.22}, {'connected_gene': 'GC10M115985', 'score': 0.13}]
chr10	GH10I116080	116080610	116080859	0.62	[{'connected_gene': 'GC10M115985', 'score': 0.39}, {'connected_gene': 'GC10M115974', 'score': 0.15}, {'connected_gene': 'GFRA1', 'score': 0.08}]
chr10	GH10I116057	116057070	116057159	0.92	[{'connected_gene': 'GC10M115985', 'score': 0.28}, {'connected_gene': 'GC10M115974', 'score': 0.18}, {'connected_gene': 'GFRA1', 'score': 0.08}]