PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000232125	[[122103022, 122103146], [122120222, 122120382], [122121606, 122121729], [122123104, 122123210], [122126127, 122126236], [122128585, 122128764]]	[[122120378, 122120382], [122121606, 122121729], [122123104, 122123210], [122126127, 122126236], [122128585, 122128678]]
ENST00000477892	[[122103028, 122103146], [122121606, 122121729], [122123104, 122123210], [122126127, 122126236], [122128585, 122131181]]	[[122103112, 122103146], [122121606, 122121729], [122123104, 122123210], [122126127, 122126236], [122128585, 122128678]]
ENST00000469967	[[122103044, 122103146], [122121606, 122121729], [122123104, 122123210], [122126127, 122126811]]	[[122103112, 122103146], [122121606, 122121729], [122123104, 122123210], [122126127, 122126290]]
NM_014367	[[122103022, 122103146], [122121606, 122121729], [122123104, 122123210], [122126127, 122126236], [122128585, 122128961]]	[[122103112, 122103146], [122121606, 122121729], [122123104, 122123210], [122126127, 122126236], [122128585, 122128678]]

Promoter

Chrom	Start	End	Description
chr3	122103002	122103013	CAGE_peak_2_at_FAM162A_5end
chr3	122103014	122103088	CAGE_peak_1_at_FAM162A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I122073	122073889	122080970	2.01	[{'connected_gene': 'CD86', 'score': 562.73}, {'connected_gene': 'ENSG00000202388', 'score': 12.36}, {'connected_gene': 'DTX3L', 'score': 10.76}, {'connected_gene': 'PARP9', 'score': 10.42}, {'connected_gene': 'CCDC58', 'score': 9.91}, {'connected_gene': 'FAM162A', 'score': 9.91}, {'connected_gene': 'IQCB1', 'score': 5.91}, {'connected_gene': 'EAF2', 'score': 1.77}, {'connected_gene': 'CSTA', 'score': 1.68}, {'connected_gene': 'HCLS1', 'score': 1.65}, {'connected_gene': 'ILDR1', 'score': 0.37}, {'connected_gene': 'CASR', 'score': 0.14}]
chr3	GH03I122403	122403554	122403703	0.2	[{'connected_gene': 'WDR5B', 'score': 0.39}, {'connected_gene': 'FAM162A', 'score': 0.37}]
chr3	GH03I122393	122393014	122393183	0.68	[{'connected_gene': 'WDR5B', 'score': 14.67}, {'connected_gene': 'FAM162A', 'score': 0.44}]
chr3	GH03I122386	122386201	122386400	0.31	[{'connected_gene': 'WDR5B', 'score': 10.6}, {'connected_gene': 'FAM162A', 'score': 0.77}]
chr3	GH03I122409	122409001	122410200	0.51	[{'connected_gene': 'WDR5B', 'score': 20.12}, {'connected_gene': 'LOC102723582', 'score': 12.72}, {'connected_gene': 'FAM162A', 'score': 10.77}, {'connected_gene': 'CCDC58', 'score': 10.77}, {'connected_gene': 'PARP14', 'score': 9.84}]
chr3	GH03I122414	122414824	122417492	2.22	[{'connected_gene': 'WDR5B', 'score': 573.28}, {'connected_gene': 'LOC102723582', 'score': 568.14}, {'connected_gene': 'ENSG00000242531', 'score': 550.77}, {'connected_gene': 'FAM162A', 'score': 10.6}, {'connected_gene': 'CCDC58', 'score': 10.6}]
chr3	GH03I122082	122081922	122083176	0.59	[{'connected_gene': 'ILDR1', 'score': 11.46}, {'connected_gene': 'ENSG00000202388', 'score': 11.34}, {'connected_gene': 'CSTA', 'score': 10.63}, {'connected_gene': 'CCDC58', 'score': 9.82}, {'connected_gene': 'FAM162A', 'score': 9.82}, {'connected_gene': 'IQCB1', 'score': 6.35}, {'connected_gene': 'CD86', 'score': 0.31}, {'connected_gene': 'CASR', 'score': 0.15}]
chr3	GH03I122081	122081622	122081833	0.98	[{'connected_gene': 'ILDR1', 'score': 11.46}, {'connected_gene': 'ENSG00000202388', 'score': 11.34}, {'connected_gene': 'CSTA', 'score': 10.63}, {'connected_gene': 'CCDC58', 'score': 9.82}, {'connected_gene': 'FAM162A', 'score': 9.82}, {'connected_gene': 'CD86', 'score': 8.63}, {'connected_gene': 'EAF2', 'score': 2.54}, {'connected_gene': 'CASR', 'score': 0.15}]
chr3	GH03I122381	122381775	122385401	2.08	[{'connected_gene': 'FAM162A', 'score': 555.02}, {'connected_gene': 'CCDC58', 'score': 550.77}, {'connected_gene': 'WDR5B', 'score': 18.02}, {'connected_gene': 'LOC102723582', 'score': 13.14}]
chr3	GH03I122313	122313907	122315436	0.88	[{'connected_gene': 'CSTA', 'score': 13.43}, {'connected_gene': 'WDR5B', 'score': 12.2}, {'connected_gene': 'CCDC58', 'score': 10.74}, {'connected_gene': 'FAM162A', 'score': 10.74}, {'connected_gene': 'PARP14', 'score': 9.79}, {'connected_gene': 'PARP9', 'score': 4.02}, {'connected_gene': 'DTX3L', 'score': 4.0}, {'connected_gene': 'DIRC2', 'score': 2.41}, {'connected_gene': 'CD86', 'score': 1.85}, {'connected_gene': 'KPNA1', 'score': 1.46}, {'connected_gene': 'HSPBAP1', 'score': 1.36}, {'connected_gene': 'HNRNPA1P23', 'score': 0.77}, {'connected_gene': 'CASR', 'score': 0.12}]
chr3	GH03I122271	122271401	122271600	0.67	[{'connected_gene': 'CSTA', 'score': 10.73}, {'connected_gene': 'FAM162A', 'score': 10.29}, {'connected_gene': 'CCDC58', 'score': 10.29}, {'connected_gene': 'LOC102723582', 'score': 6.49}, {'connected_gene': 'HNRNPA1P23', 'score': 0.25}, {'connected_gene': 'CASR', 'score': 0.17}]
chr3	GH03I122356	122356142	122356153	0.35	[{'connected_gene': 'CSTA', 'score': 11.94}, {'connected_gene': 'FAM162A', 'score': 11.61}, {'connected_gene': 'CCDC58', 'score': 11.61}]
chr3	GH03I122314	122313429	122313581	0.42	[{'connected_gene': 'CSTA', 'score': 13.04}, {'connected_gene': 'CCDC58', 'score': 10.74}, {'connected_gene': 'FAM162A', 'score': 10.73}, {'connected_gene': 'PARP14', 'score': 8.53}, {'connected_gene': 'PARP9', 'score': 3.36}, {'connected_gene': 'DTX3L', 'score': 3.23}, {'connected_gene': 'DIRC2', 'score': 1.27}, {'connected_gene': 'KPNA1', 'score': 1.19}, {'connected_gene': 'HNRNPA1P23', 'score': 0.77}, {'connected_gene': 'CASR', 'score': 0.13}]
chr3	GH03I122268	122268783	122268872	0.68	[{'connected_gene': 'CSTA', 'score': 10.72}, {'connected_gene': 'CCDC58', 'score': 10.29}, {'connected_gene': 'FAM162A', 'score': 10.29}, {'connected_gene': 'WDR5B', 'score': 4.7}, {'connected_gene': 'CD86', 'score': 4.23}, {'connected_gene': 'HNRNPA1P23', 'score': 0.25}, {'connected_gene': 'CASR', 'score': 0.17}]
chr3	GH03I122485	122485001	122485201	0.69	[{'connected_gene': 'GC03P122484', 'score': 550.77}, {'connected_gene': 'WDR5B', 'score': 15.47}, {'connected_gene': 'KPNA1', 'score': 12.3}, {'connected_gene': 'GOLGB1', 'score': 11.44}, {'connected_gene': 'IQCB1', 'score': 11.12}, {'connected_gene': 'FAM162A', 'score': 10.27}, {'connected_gene': 'CCDC58', 'score': 10.27}]
chr3	GH03I122482	122482423	122483912	1.02	[{'connected_gene': 'ENSG00000275348', 'score': 550.77}, {'connected_gene': 'GC03P122484', 'score': 550.77}, {'connected_gene': 'WDR5B', 'score': 22.71}, {'connected_gene': 'LOC102723582', 'score': 17.09}, {'connected_gene': 'KPNA1', 'score': 12.39}, {'connected_gene': 'FAM162A', 'score': 10.28}, {'connected_gene': 'CCDC58', 'score': 10.28}]