PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000493559	[[123514255, 123515589], [123533625, 123533795], [123535031, 123535118], [123538370, 123538933]]	None
ENST00000608872	[[123519251, 123527125], [123533625, 123533795], [123535031, 123535118], [123538370, 123538504], [123540628, 123540823], [123550046, 123550556], [123555426, 123555535], [123555631, 123555690]]	[[123526836, 123527125], [123533625, 123533795], [123535031, 123535118], [123538370, 123538504], [123540628, 123540823], [123550046, 123550536]]
ENST00000340778	[[123526452, 123527125], [123533625, 123533795], [123535031, 123535118], [123538370, 123538504], [123550046, 123550556], [123555426, 123555535], [123555637, 123555655]]	[[123526836, 123527125], [123533625, 123533795], [123535031, 123535118], [123538370, 123538504], [123550046, 123550536]]
ENST00000453291	[[123533688, 123533795], [123535031, 123535118], [123538370, 123538504], [123540628, 123540823], [123550046, 123550464], [123555426, 123555535], [123555631, 123555660]]	[[123533688, 123533795], [123535031, 123535118], [123538370, 123538504], [123540628, 123540823], [123550046, 123550149]]
ENST00000474117	[[123538366, 123538504], [123540628, 123540823], [123550046, 123550556], [123555426, 123555645]]	None
ENST00000476481	[[123550293, 123550556], [123555164, 123555535], [123555631, 123555658]]	None
NM_012164	[[123519253, 123527125], [123533625, 123533795], [123535031, 123535118], [123538370, 123538504], [123540628, 123540823], [123550046, 123550556], [123555426, 123555535], [123555631, 123555740]]	[[123526836, 123527125], [123533625, 123533795], [123535031, 123535118], [123538370, 123538504], [123540628, 123540823], [123550046, 123550536]]

Promoter

Chrom	Start	End	Description
chr9	123555536	123555572	CAGE_peak_2_at_FBXW2_5end
chr9	123555621	123555646	CAGE_peak_3_at_FBXW2_5end
chr9	123555655	123555712	CAGE_peak_1_at_FBXW2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I120888	120888373	120895365	1.51	[{'connected_gene': 'TRAF1', 'score': 36.29}, {'connected_gene': 'CUTALP', 'score': 27.21}, {'connected_gene': 'PSMD5', 'score': 20.77}, {'connected_gene': 'FBXW2', 'score': 16.2}, {'connected_gene': 'CNTRL', 'score': 9.71}, {'connected_gene': 'PHF19', 'score': 0.77}, {'connected_gene': 'PIR42449', 'score': 0.28}]
chr9	GH09I120923	120923211	120938455	2.74	[{'connected_gene': 'TRAF1', 'score': 572.95}, {'connected_gene': 'CUTALP', 'score': 42.09}, {'connected_gene': 'PSMD5', 'score': 16.86}, {'connected_gene': 'FBXW2', 'score': 12.03}, {'connected_gene': 'B3GNT10', 'score': 10.83}, {'connected_gene': 'CNTRL', 'score': 0.11}]
chr9	GH09I121597	121597302	121600463	1.55	[{'connected_gene': 'PSMD5', 'score': 13.13}, {'connected_gene': 'CUTALP', 'score': 12.59}, {'connected_gene': 'MRRF', 'score': 11.75}, {'connected_gene': 'CNTRL', 'score': 11.69}, {'connected_gene': 'FBXW2', 'score': 9.86}, {'connected_gene': 'GGTA1P', 'score': 5.35}, {'connected_gene': 'ENSG00000229854', 'score': 0.34}, {'connected_gene': 'DAB2IP', 'score': 0.29}, {'connected_gene': 'LOC105376257', 'score': 0.12}]
chr9	GH09I120768	120768423	120770128	0.72	[{'connected_gene': 'PSMD5', 'score': 10.73}, {'connected_gene': 'CUTALP', 'score': 6.73}, {'connected_gene': 'FBXW2', 'score': 0.34}, {'connected_gene': 'PIR59216', 'score': 0.34}, {'connected_gene': 'AHCYP2', 'score': 0.25}]
chr9	GH09I120755	120755801	120756092	0.92	[{'connected_gene': 'PSMD5', 'score': 22.61}, {'connected_gene': 'CUTALP', 'score': 12.12}, {'connected_gene': 'MEGF9', 'score': 11.1}, {'connected_gene': 'AHCYP2', 'score': 0.28}, {'connected_gene': 'FBXW2', 'score': 0.28}, {'connected_gene': 'PIR59216', 'score': 0.28}]
chr9	GH09I120765	120765876	120768398	1.02	[{'connected_gene': 'PSMD5', 'score': 10.53}, {'connected_gene': 'CNTRL', 'score': 9.74}, {'connected_gene': 'FBXW2', 'score': 0.31}, {'connected_gene': 'PIR59216', 'score': 0.31}, {'connected_gene': 'AHCYP2', 'score': 0.25}]
chr9	GH09I120965	120965306	120966960	0.89	[{'connected_gene': 'PSMD5', 'score': 27.51}, {'connected_gene': 'CNTRL', 'score': 18.23}, {'connected_gene': 'FBXW2', 'score': 15.65}, {'connected_gene': 'CUTALP', 'score': 14.6}, {'connected_gene': 'TRAF1', 'score': 13.1}, {'connected_gene': 'C5', 'score': 0.14}]
chr9	GH09I120578	120578740	120581192	2.07	[{'connected_gene': 'CDK5RAP2', 'score': 558.57}, {'connected_gene': 'PIR42935', 'score': 550.77}, {'connected_gene': 'PSMD5', 'score': 25.44}, {'connected_gene': 'FBXW2', 'score': 25.31}, {'connected_gene': 'CNTRL', 'score': 10.68}, {'connected_gene': 'ENSG00000270917', 'score': 9.93}, {'connected_gene': 'MEGF9', 'score': 4.26}, {'connected_gene': 'PIR33352', 'score': 0.18}]
chr9	GH09I121192	121192502	121202800	2.45	[{'connected_gene': 'RAB14', 'score': 550.31}, {'connected_gene': 'CUTALP', 'score': 24.55}, {'connected_gene': 'C5', 'score': 18.57}, {'connected_gene': 'CNTRL', 'score': 13.19}, {'connected_gene': 'GSN-AS1', 'score': 11.43}, {'connected_gene': 'ENSG00000239593', 'score': 11.43}, {'connected_gene': 'FBXW2', 'score': 11.22}, {'connected_gene': 'LOC102723324', 'score': 11.05}, {'connected_gene': 'STOM', 'score': 10.57}, {'connected_gene': 'GGTA1P', 'score': 7.2}, {'connected_gene': 'TRAF1', 'score': 6.35}, {'connected_gene': 'DAB2IP', 'score': 5.42}, {'connected_gene': 'RN7SL181P', 'score': 0.44}, {'connected_gene': 'PIR40575', 'score': 0.39}]
chr9	GH09I121267	121267376	121273508	2.35	[{'connected_gene': 'GSN', 'score': 566.99}, {'connected_gene': 'PSMD5', 'score': 16.31}, {'connected_gene': 'CNTRL', 'score': 15.88}, {'connected_gene': 'FBXW2', 'score': 15.62}, {'connected_gene': 'RAB14', 'score': 13.61}, {'connected_gene': 'CUTALP', 'score': 12.93}, {'connected_gene': 'MRRF', 'score': 10.91}, {'connected_gene': 'STOM', 'score': 10.87}, {'connected_gene': 'LOC102723324', 'score': 10.87}, {'connected_gene': 'C5', 'score': 10.78}, {'connected_gene': 'ENSG00000239593', 'score': 0.39}, {'connected_gene': 'LOC645482', 'score': 0.29}]
chr9	GH09I121275	121275157	121290453	2.26	[{'connected_gene': 'GSN', 'score': 562.44}, {'connected_gene': 'ENSG00000239593', 'score': 550.77}, {'connected_gene': 'PSMD5', 'score': 16.32}, {'connected_gene': 'CNTRL', 'score': 15.87}, {'connected_gene': 'FBXW2', 'score': 15.62}, {'connected_gene': 'CUTALP', 'score': 13.25}, {'connected_gene': 'GGTA1P', 'score': 11.28}, {'connected_gene': 'MRRF', 'score': 10.91}, {'connected_gene': 'C5', 'score': 10.78}, {'connected_gene': 'STOM', 'score': 10.69}, {'connected_gene': 'LOC102723324', 'score': 10.69}, {'connected_gene': 'GSN-AS1', 'score': 0.77}]
chr9	GH09I120777	120777403	120777436	0.54	[{'connected_gene': 'FBXW2', 'score': 0.37}, {'connected_gene': 'PIR59216', 'score': 0.37}, {'connected_gene': 'AHCYP2', 'score': 0.22}]
chr9	GH09I120909	120909434	120910468	1	[{'connected_gene': 'CUTALP', 'score': 27.17}, {'connected_gene': 'TRAF1', 'score': 13.53}, {'connected_gene': 'FBXW2', 'score': 1.37}, {'connected_gene': 'PHF19', 'score': 0.37}]
chr9	GH09I120918	120918712	120921228	1.51	[{'connected_gene': 'CUTALP', 'score': 27.33}, {'connected_gene': 'TRAF1', 'score': 21.27}, {'connected_gene': 'FBXW2', 'score': 1.26}, {'connected_gene': 'PHF19', 'score': 0.31}]
chr9	GH09I120896	120896675	120898259	1.25	[{'connected_gene': 'CUTALP', 'score': 27.2}, {'connected_gene': 'FBXW2', 'score': 14.49}, {'connected_gene': 'PSMD5', 'score': 14.0}, {'connected_gene': 'TRAF1', 'score': 12.67}, {'connected_gene': 'CNTRL', 'score': 12.38}, {'connected_gene': 'ENSG00000239593', 'score': 10.21}, {'connected_gene': 'PHF19', 'score': 0.77}]
chr9	GH09I120916	120915636	120918255	1.08	[{'connected_gene': 'CUTALP', 'score': 27.46}, {'connected_gene': 'FBXW2', 'score': 22.61}, {'connected_gene': 'PSMD5', 'score': 17.42}, {'connected_gene': 'CNTRL', 'score': 12.66}, {'connected_gene': 'TRAF1', 'score': 7.43}, {'connected_gene': 'PHF19', 'score': 0.34}]
chr9	GH09I120775	120775962	120776845	0.67	[{'connected_gene': 'CUTALP', 'score': 7.88}, {'connected_gene': 'FBXW2', 'score': 0.37}, {'connected_gene': 'PIR59216', 'score': 0.37}, {'connected_gene': 'AHCYP2', 'score': 0.22}]
chr9	GH09I120787	120787375	120789456	0.43	[{'connected_gene': 'CUTALP', 'score': 50.75}, {'connected_gene': 'PIR59216', 'score': 0.77}, {'connected_gene': 'FBXW2', 'score': 0.44}, {'connected_gene': 'AHCYP2', 'score': 0.2}]
chr9	GH09I121366	121366710	121374168	2.52	[{'connected_gene': 'STOM', 'score': 556.46}, {'connected_gene': 'LOC102723324', 'score': 550.77}, {'connected_gene': 'GGTA1P', 'score': 21.35}, {'connected_gene': 'CUTALP', 'score': 18.66}, {'connected_gene': 'PSMD5', 'score': 13.13}, {'connected_gene': 'MRRF', 'score': 11.75}, {'connected_gene': 'CNTRL', 'score': 11.72}, {'connected_gene': 'FBXW2', 'score': 9.86}, {'connected_gene': 'GC09M121372', 'score': 0.77}]
chr9	GH09I120783	120783401	120784392	1.24	[{'connected_gene': 'MEGF9', 'score': 12.5}, {'connected_gene': 'TRAF1', 'score': 7.52}, {'connected_gene': 'FBXW2', 'score': 2.27}, {'connected_gene': 'PIR59216', 'score': 0.44}, {'connected_gene': 'AHCYP2', 'score': 0.21}]
chr9	GH09I120757	120757001	120757600	0.43	[{'connected_gene': 'MEGF9', 'score': 11.71}, {'connected_gene': 'AHCYP2', 'score': 0.28}, {'connected_gene': 'FBXW2', 'score': 0.28}, {'connected_gene': 'PIR59216', 'score': 0.28}]
chr9	GH09I120474	120474402	120476179	0.92	[{'connected_gene': 'MEGF9', 'score': 13.98}, {'connected_gene': 'FBXW2', 'score': 2.5}, {'connected_gene': 'PIR42824', 'score': 0.31}, {'connected_gene': 'GC09P120416', 'score': 0.22}, {'connected_gene': 'CDK5RAP2', 'score': 0.15}]
chr9	GH09I120778	120778376	120779512	0.89	[{'connected_gene': 'MEGF9', 'score': 11.87}, {'connected_gene': 'FBXW2', 'score': 0.39}, {'connected_gene': 'PIR59216', 'score': 0.39}, {'connected_gene': 'AHCYP2', 'score': 0.22}]
chr9	GH09I120709	120709422	120716358	2.45	[{'connected_gene': 'MEGF9', 'score': 555.45}, {'connected_gene': 'CUTALP', 'score': 37.75}, {'connected_gene': 'CNTRL', 'score': 26.32}, {'connected_gene': 'PSMD5', 'score': 16.39}, {'connected_gene': 'FBXW2', 'score': 15.75}, {'connected_gene': 'PIR45570', 'score': 0.16}]
chr9	GH09I121397	121397647	121400599	1.24	[{'connected_gene': 'GGTA1P', 'score': 43.18}, {'connected_gene': 'PSMD5', 'score': 38.77}, {'connected_gene': 'CNTRL', 'score': 30.84}, {'connected_gene': 'FBXW2', 'score': 30.47}, {'connected_gene': 'MRRF', 'score': 29.97}, {'connected_gene': 'CUTALP', 'score': 25.28}, {'connected_gene': 'LOC102723324', 'score': 12.72}, {'connected_gene': 'STOM', 'score': 11.75}, {'connected_gene': 'GSN-AS1', 'score': 11.41}, {'connected_gene': 'ENSG00000239593', 'score': 11.41}, {'connected_gene': 'GSN', 'score': 11.36}, {'connected_gene': 'GC09M121372', 'score': 0.31}, {'connected_gene': 'LOC102724773', 'score': 0.23}]
chr9	GH09I121070	121070930	121076212	1.89	[{'connected_gene': 'CNTRL', 'score': 574.88}, {'connected_gene': 'C5', 'score': 570.4}, {'connected_gene': 'PSMD5', 'score': 66.58}, {'connected_gene': 'FBXW2', 'score': 46.83}, {'connected_gene': 'CUTALP', 'score': 13.69}, {'connected_gene': 'ENSG00000270917', 'score': 12.4}, {'connected_gene': 'TRAF1', 'score': 10.57}, {'connected_gene': 'DAB2IP', 'score': 10.01}]
chr9	GH09I120791	120791028	120794595	2.08	[{'connected_gene': 'B3GNT10', 'score': 550.77}, {'connected_gene': 'FBXW2', 'score': 550.77}, {'connected_gene': 'PIR59216', 'score': 550.77}, {'connected_gene': 'PSMD5', 'score': 10.75}, {'connected_gene': 'CUTALP', 'score': 5.4}, {'connected_gene': 'AHCYP2', 'score': 0.19}]
chr9	GH09I120772	120772751	120773984	0.38	[{'connected_gene': 'PIR59216', 'score': 0.37}, {'connected_gene': 'FBXW2', 'score': 0.34}, {'connected_gene': 'AHCYP2', 'score': 0.23}]