PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000260061	[[76368567, 76372552], [76376914, 76377002], [76381657, 76381791]]	[[76370647, 76372552], [76376914, 76376998]]
ENST00000407242	[[76368568, 76372552], [76376914, 76377002], [76380805, 76381044]]	[[76370647, 76372552], [76376914, 76376998]]
ENST00000404995	[[76368570, 76369078], [76370626, 76372552], [76376914, 76377002], [76381657, 76381791]]	[[76370647, 76372552], [76376914, 76376998]]
ENST00000464145	[[76368613, 76369078], [76376914, 76377015]]	None
ENST00000421973	[[76372078, 76372552], [76376914, 76377002], [76380805, 76381044]]	[[76372078, 76372552], [76376914, 76376998]]
NM_005512	[[76368567, 76372552], [76376914, 76377002], [76380805, 76381044]]	[[76370647, 76372552], [76376914, 76376998]]
NM_001128922	[[76368567, 76372552], [76376914, 76377002], [76381657, 76381791]]	[[76370647, 76372552], [76376914, 76376998]]

Promoter

Chrom	Start	End	Description
chr11	76380944	76380989	CAGE_peak_2_at_LRRC32_5end
chr11	76380996	76381024	CAGE_peak_3_at_LRRC32_5end
chr11	76381029	76381041	CAGE_peak_6_at_LRRC32_5end
chr11	76381054	76381072	CAGE_peak_5_at_LRRC32_5end
chr11	76381695	76381719	CAGE_peak_4_at_LRRC32_5end
chr11	76381781	76381798	CAGE_peak_1_at_LRRC32_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I076558	76558983	76561101	0.72	[{'connected_gene': 'LRRC32', 'score': 11.26}, {'connected_gene': 'ENSG00000254975', 'score': 11.25}, {'connected_gene': 'WNT11', 'score': 4.57}, {'connected_gene': 'PIR57504', 'score': 0.34}, {'connected_gene': 'EMSY', 'score': 0.13}]
chr11	GH11I076553	76553552	76554703	0.38	[{'connected_gene': 'LRRC32', 'score': 11.65}, {'connected_gene': 'ENSG00000254975', 'score': 11.65}, {'connected_gene': 'ENSG00000254810', 'score': 11.49}, {'connected_gene': 'LOC107984360', 'score': 11.49}, {'connected_gene': 'ENSG00000254632', 'score': 10.03}, {'connected_gene': 'PIR57504', 'score': 0.31}, {'connected_gene': 'EMSY', 'score': 0.14}]
chr11	GH11I076598	76598600	76599642	0.79	[{'connected_gene': 'LRRC32', 'score': 12.69}, {'connected_gene': 'ENSG00000254975', 'score': 12.68}, {'connected_gene': 'ENSG00000254810', 'score': 12.11}, {'connected_gene': 'LOC107984360', 'score': 12.11}, {'connected_gene': 'ACER3', 'score': 8.85}, {'connected_gene': 'ENSG00000254755', 'score': 0.44}, {'connected_gene': 'ENSG00000255479', 'score': 0.31}]
chr11	GH11I076614	76614401	76618110	0.94	[{'connected_gene': 'LRRC32', 'score': 12.84}, {'connected_gene': 'ENSG00000254975', 'score': 12.83}, {'connected_gene': 'ENSG00000254810', 'score': 11.92}, {'connected_gene': 'LOC107984360', 'score': 11.92}, {'connected_gene': 'GVQW3', 'score': 4.48}, {'connected_gene': 'ENSG00000255363', 'score': 0.39}, {'connected_gene': 'LOC101928813', 'score': 0.39}, {'connected_gene': 'ENSG00000255479', 'score': 0.39}, {'connected_gene': 'ENSG00000254755', 'score': 0.31}]
chr11	GH11I076601	76601427	76605926	1.08	[{'connected_gene': 'LRRC32', 'score': 12.7}, {'connected_gene': 'ENSG00000254975', 'score': 12.69}, {'connected_gene': 'ENSG00000254810', 'score': 12.12}, {'connected_gene': 'LOC107984360', 'score': 12.12}, {'connected_gene': 'GVQW3', 'score': 4.52}, {'connected_gene': 'ENSG00000254755', 'score': 0.39}, {'connected_gene': 'ENSG00000255479', 'score': 0.34}]
chr11	GH11I076648	76648731	76650482	0.58	[{'connected_gene': 'LRRC32', 'score': 13.14}, {'connected_gene': 'ENSG00000254975', 'score': 13.12}, {'connected_gene': 'ENSG00000254632', 'score': 9.89}, {'connected_gene': 'LOC107984360', 'score': 6.7}, {'connected_gene': 'ENSG00000254810', 'score': 0.44}, {'connected_gene': 'ENSG00000255363', 'score': 0.37}]
chr11	GH11I076605	76605937	76606907	0.94	[{'connected_gene': 'LRRC32', 'score': 12.7}, {'connected_gene': 'ENSG00000254975', 'score': 12.7}, {'connected_gene': 'ENSG00000254810', 'score': 12.12}, {'connected_gene': 'LOC107984360', 'score': 12.12}, {'connected_gene': 'ENSG00000254755', 'score': 0.37}, {'connected_gene': 'ENSG00000255479', 'score': 0.34}]
chr11	GH11I076669	76668746	76673914	2.29	[{'connected_gene': 'LRRC32', 'score': 550.77}, {'connected_gene': 'LOC107984360', 'score': 8.79}, {'connected_gene': 'ENSG00000254975', 'score': 0.77}]
chr11	GH11I076668	76668200	76668401	0.88	[{'connected_gene': 'LRRC32', 'score': 0.77}, {'connected_gene': 'LOC107984360', 'score': 0.39}]
chr11	GH11I076664	76664361	76667495	1.45	[{'connected_gene': 'LOC107984360', 'score': 7.69}, {'connected_gene': 'LRRC32', 'score': 1.88}]
chr11	GH11I076652	76652902	76657912	1.05	[{'connected_gene': 'LOC107984360', 'score': 588.89}, {'connected_gene': 'ENSG00000254810', 'score': 558.79}, {'connected_gene': 'ENSG00000255363', 'score': 10.95}, {'connected_gene': 'CLNS1A', 'score': 4.67}, {'connected_gene': 'LRRC32', 'score': 0.37}]
chr11	GH11I076674	76674697	76674826	0.57	[{'connected_gene': 'ENSG00000254975', 'score': 550.77}, {'connected_gene': 'LRRC32', 'score': 0.77}]
chr11	GH11I076609	76609588	76611866	0.92	[{'connected_gene': 'ENSG00000254810', 'score': 12.54}, {'connected_gene': 'LOC107984360', 'score': 12.54}, {'connected_gene': 'LRRC32', 'score': 12.48}, {'connected_gene': 'ENSG00000254975', 'score': 12.48}, {'connected_gene': 'ENSG00000254632', 'score': 10.43}, {'connected_gene': 'ENSG00000255363', 'score': 0.37}, {'connected_gene': 'LOC101928813', 'score': 0.37}, {'connected_gene': 'ENSG00000254755', 'score': 0.37}, {'connected_gene': 'ENSG00000255479', 'score': 0.37}]
chr11	GH11I076626	76626800	76627801	0.98	[{'connected_gene': 'ENSG00000255479', 'score': 550.77}, {'connected_gene': 'ENSG00000254810', 'score': 13.8}, {'connected_gene': 'LOC107984360', 'score': 13.8}, {'connected_gene': 'LRRC32', 'score': 13.3}, {'connected_gene': 'ENSG00000254975', 'score': 13.29}, {'connected_gene': 'ENSG00000255363', 'score': 0.77}, {'connected_gene': 'LOC101928813', 'score': 0.77}]