PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000309558	[[33191536, 33195525], [33216377, 33216566], [33249299, 33249418], [33255419, 33255597], [33260177, 33260707]]	[[33194233, 33195525], [33216377, 33216566], [33249299, 33249418], [33255419, 33255597], [33260177, 33260289]]
ENST00000412539	[[33195201, 33195525], [33249299, 33249418], [33255419, 33255597], [33260177, 33260285]]	[[33195201, 33195525], [33249299, 33249418], [33255419, 33255597], [33260177, 33260285]]
NM_015551	[[33191536, 33195525], [33216377, 33216566], [33249299, 33249418], [33255419, 33255597], [33260177, 33260707]]	[[33194233, 33195525], [33216377, 33216566], [33249299, 33249418], [33255419, 33255597], [33260177, 33260289]]

Promoter

Chrom	Start	End	Description
chr3	33260283	33260346	CAGE_peak_1_at_SUSD5_5end
chr3	33260352	33260365	CAGE_peak_3_at_SUSD5_5end
chr3	33260373	33260422	CAGE_peak_2_at_SUSD5_5end
chr3	33260478	33260490	CAGE_peak_8_at_SUSD5_5end
chr3	33260765	33260770	CAGE_peak_7_at_SUSD5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I033298	33298679	33301548	0.72	[{'connected_gene': 'UBP1', 'score': 17.25}, {'connected_gene': 'SUSD5', 'score': 15.37}, {'connected_gene': 'FBXL2', 'score': 12.7}, {'connected_gene': 'RNU7-110P', 'score': 0.14}]
chr3	GH03I033340	33340574	33340858	0.25	[{'connected_gene': 'UBP1', 'score': 15.58}, {'connected_gene': 'SUSD5', 'score': 10.16}, {'connected_gene': 'CLASP2', 'score': 1.77}, {'connected_gene': 'FBXL2', 'score': 0.21}, {'connected_gene': 'RNU7-110P', 'score': 0.19}]
chr3	GH03I033417	33417086	33417471	0.63	[{'connected_gene': 'UBP1', 'score': 11.35}, {'connected_gene': 'SUSD5', 'score': 8.79}, {'connected_gene': 'RNU7-110P', 'score': 0.77}, {'connected_gene': 'GC03M033417', 'score': 0.44}]
chr3	GH03I033422	33422055	33422946	0.2	[{'connected_gene': 'UBP1', 'score': 18.99}, {'connected_gene': 'SUSD5', 'score': 8.79}, {'connected_gene': 'GC03M033417', 'score': 0.77}, {'connected_gene': 'RNU7-110P', 'score': 0.44}]
chr3	GH03I033400	33400103	33403016	0.49	[{'connected_gene': 'UBP1', 'score': 29.3}, {'connected_gene': 'FBXL2', 'score': 20.12}, {'connected_gene': 'SUSD5', 'score': 9.53}, {'connected_gene': 'ENSG00000271324', 'score': 4.66}, {'connected_gene': 'RNU7-110P', 'score': 0.39}]
chr3	GH03I033419	33419801	33420800	0.4	[{'connected_gene': 'UBP1', 'score': 26.02}, {'connected_gene': 'FBXL2', 'score': 20.53}, {'connected_gene': 'SUSD5', 'score': 8.79}, {'connected_gene': 'GC03M033417', 'score': 0.44}, {'connected_gene': 'RNU7-110P', 'score': 0.44}]
chr3	GH03I033385	33385019	33386992	0.78	[{'connected_gene': 'UBP1', 'score': 17.1}, {'connected_gene': 'FBXL2', 'score': 12.13}, {'connected_gene': 'CRTAP', 'score': 10.57}, {'connected_gene': 'SUSD5', 'score': 10.04}, {'connected_gene': 'CLASP2', 'score': 9.54}, {'connected_gene': 'TMPPE', 'score': 4.96}, {'connected_gene': 'RNU7-110P', 'score': 0.31}]
chr3	GH03I033377	33377611	33378486	0.43	[{'connected_gene': 'UBP1', 'score': 18.84}, {'connected_gene': 'CRTAP', 'score': 10.58}, {'connected_gene': 'SUSD5', 'score': 10.04}, {'connected_gene': 'CLASP2', 'score': 9.46}, {'connected_gene': 'RNU7-110P', 'score': 0.28}, {'connected_gene': 'FBXL2', 'score': 0.15}]
chr3	GH03I033131	33131309	33132250	0.85	[{'connected_gene': 'TMPPE', 'score': 11.32}, {'connected_gene': 'GLB1', 'score': 11.32}, {'connected_gene': 'SUSD5', 'score': 10.69}, {'connected_gene': 'CLASP2', 'score': 9.53}, {'connected_gene': 'PIR55934', 'score': 0.39}, {'connected_gene': 'CRTAP', 'score': 0.37}, {'connected_gene': 'GC03P033114', 'score': 0.37}]
chr3	GH03I033124	33124320	33124886	0.2	[{'connected_gene': 'TMPPE', 'score': 11.25}, {'connected_gene': 'GLB1', 'score': 11.25}, {'connected_gene': 'SUSD5', 'score': 10.68}, {'connected_gene': 'CRTAP', 'score': 5.87}, {'connected_gene': 'GC03P033114', 'score': 0.39}, {'connected_gene': 'PIR55934', 'score': 0.37}]
chr3	GH03I033130	33130040	33130437	0.2	[{'connected_gene': 'TMPPE', 'score': 11.24}, {'connected_gene': 'GLB1', 'score': 11.24}, {'connected_gene': 'SUSD5', 'score': 10.69}, {'connected_gene': 'CRTAP', 'score': 4.57}, {'connected_gene': 'PIR55934', 'score': 0.39}, {'connected_gene': 'GC03P033114', 'score': 0.37}]
chr3	GH03I033158	33158034	33160743	0.31	[{'connected_gene': 'SUSD5', 'score': 16.27}, {'connected_gene': 'CRTAP', 'score': 15.71}, {'connected_gene': 'TMPPE', 'score': 10.32}, {'connected_gene': 'GLB1', 'score': 10.32}, {'connected_gene': 'PIR50801', 'score': 0.44}, {'connected_gene': 'ENSG00000230119', 'score': 0.29}]
chr3	GH03I033167	33167226	33168294	0.38	[{'connected_gene': 'SUSD5', 'score': 11.03}, {'connected_gene': 'CRTAP', 'score': 4.61}, {'connected_gene': 'PIR50801', 'score': 0.39}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033169	33169398	33170090	0.2	[{'connected_gene': 'SUSD5', 'score': 11.04}, {'connected_gene': 'CRTAP', 'score': 4.65}, {'connected_gene': 'PIR50801', 'score': 0.37}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033166	33166286	33167024	0.2	[{'connected_gene': 'SUSD5', 'score': 10.77}, {'connected_gene': 'CRTAP', 'score': 10.56}, {'connected_gene': 'PIR50801', 'score': 0.39}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033156	33156869	33158015	0.31	[{'connected_gene': 'SUSD5', 'score': 15.25}, {'connected_gene': 'CRTAP', 'score': 5.25}, {'connected_gene': 'PIR50801', 'score': 0.77}, {'connected_gene': 'ENSG00000230119', 'score': 0.29}]
chr3	GH03I033171	33171550	33172776	0.52	[{'connected_gene': 'SUSD5', 'score': 11.53}, {'connected_gene': 'CRTAP', 'score': 4.64}, {'connected_gene': 'PIR50801', 'score': 0.37}, {'connected_gene': 'ENSG00000230119', 'score': 0.37}]
chr3	GH03I033170	33170116	33171031	0.31	[{'connected_gene': 'SUSD5', 'score': 11.04}, {'connected_gene': 'CRTAP', 'score': 4.63}, {'connected_gene': 'PIR50801', 'score': 0.37}, {'connected_gene': 'ENSG00000230119', 'score': 0.37}]
chr3	GH03I033165	33165744	33166263	0.2	[{'connected_gene': 'SUSD5', 'score': 10.77}, {'connected_gene': 'CRTAP', 'score': 10.56}, {'connected_gene': 'PIR50801', 'score': 0.39}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033173	33173031	33175439	0.38	[{'connected_gene': 'SUSD5', 'score': 16.35}, {'connected_gene': 'CRTAP', 'score': 4.62}, {'connected_gene': 'ENSG00000230119', 'score': 0.37}, {'connected_gene': 'PIR50801', 'score': 0.34}]
chr3	GH03I033168	33168367	33169350	0.2	[{'connected_gene': 'SUSD5', 'score': 11.03}, {'connected_gene': 'CRTAP', 'score': 5.09}, {'connected_gene': 'PIR50801', 'score': 0.37}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033218	33218358	33219400	1.78	[{'connected_gene': 'SUSD5', 'score': 567.59}, {'connected_gene': 'CRTAP', 'score': 4.77}, {'connected_gene': 'PIR48292', 'score': 0.77}]
chr3	GH03I033355	33355291	33356359	0.89	[{'connected_gene': 'FBXL2', 'score': 20.91}, {'connected_gene': 'SUSD5', 'score': 10.4}, {'connected_gene': 'UBP1', 'score': 10.38}, {'connected_gene': 'RNU7-110P', 'score': 0.22}]
chr3	GH03I033276	33276869	33279006	1.89	[{'connected_gene': 'FBXL2', 'score': 564.55}, {'connected_gene': 'SUSD5', 'score': 11.21}, {'connected_gene': 'RNU7-110P', 'score': 0.12}]
chr3	GH03I033032	33032169	33033646	0.67	[{'connected_gene': 'SEC13P1', 'score': 550.77}, {'connected_gene': 'TMPPE', 'score': 10.51}, {'connected_gene': 'GLB1', 'score': 10.51}, {'connected_gene': 'SUGT1P2', 'score': 9.34}, {'connected_gene': 'CNOT10-AS1', 'score': 9.34}, {'connected_gene': 'CNOT10', 'score': 9.33}, {'connected_gene': 'SUSD5', 'score': 9.05}, {'connected_gene': 'CRTAP', 'score': 5.1}, {'connected_gene': 'LOC105377022', 'score': 0.22}]
chr3	GH03I033149	33149282	33149964	0.58	[{'connected_gene': 'ENSG00000272149', 'score': 550.77}, {'connected_gene': 'SUSD5', 'score': 10.74}, {'connected_gene': 'CRTAP', 'score': 7.25}, {'connected_gene': 'ENSG00000271324', 'score': 4.42}, {'connected_gene': 'PIR50801', 'score': 0.77}]
chr3	GH03I033152	33152319	33154079	0.49	[{'connected_gene': 'PIR50801', 'score': 550.77}, {'connected_gene': 'SUSD5', 'score': 11.05}, {'connected_gene': 'CRTAP', 'score': 7.47}, {'connected_gene': 'ENSG00000272149', 'score': 0.44}]
chr3	GH03I033186	33186715	33187662	0.79	[{'connected_gene': 'ENSG00000230119', 'score': 0.77}, {'connected_gene': 'SUSD5', 'score': 0.29}, {'connected_gene': 'PIR50801', 'score': 0.29}]
chr3	GH03I033211	33211589	33211738	0.52	[{'connected_gene': 'PIR48292', 'score': 0.77}, {'connected_gene': 'SUSD5', 'score': 0.44}, {'connected_gene': 'ENSG00000230119', 'score': 0.34}]
chr3	GH03I033150	33150812	33151709	0.2	[{'connected_gene': 'ENSG00000272149', 'score': 0.77}, {'connected_gene': 'PIR50801', 'score': 0.77}, {'connected_gene': 'SUSD5', 'score': 0.2}]
chr3	GH03I033141	33141484	33142594	0.2	[{'connected_gene': 'PIR55934', 'score': 550.77}, {'connected_gene': 'CRTAP', 'score': 11.12}, {'connected_gene': 'SUSD5', 'score': 10.71}, {'connected_gene': 'GC03P033114', 'score': 0.31}]