PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370801	[[78030184, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78045313], [78046682, 78046754], [78047460, 78047576], [78047663, 78047811], [78050201, 78050340], [78097534, 78099090], [78105133, 78105287], [78107068, 78107131], [78107206, 78107340], [78148269, 78148343]]	[[78031324, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78045313], [78046682, 78046754], [78047460, 78047576], [78047663, 78047811], [78050201, 78050340], [78097534, 78099039]]
ENST00000370798	[[78030572, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78045313], [78046682, 78046754], [78047460, 78047576], [78047663, 78047811], [78050201, 78050340], [78105133, 78105287], [78107068, 78107131], [78107206, 78107340], [78148946, 78149104]]	[[78031324, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78045313], [78046682, 78046754], [78047460, 78047576], [78047663, 78047811], [78050201, 78050340], [78105133, 78105156]]
ENST00000433749	[[78098866, 78099090], [78105133, 78105287], [78107206, 78107340], [78148269, 78148360]]	[[78098866, 78099039]]
ENST00000414381	[[78098930, 78099090], [78105133, 78105287], [78107206, 78107340], [78148946, 78149059]]	[[78098930, 78099039]]
ENST00000463166	[[78098996, 78099090], [78105133, 78105287], [78107068, 78107131], [78107206, 78107340], [78148946, 78149088]]	None
ENST00000469944	[[78106638, 78107131], [78107206, 78107340], [78148269, 78148328]]	None
ENST00000481346	[[78028100, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78045313], [78046682, 78046754], [78047460, 78047573], [78047663, 78047811], [78050201, 78050340], [78097534, 78097606]]	None
ENST00000476275	[[78030190, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78046754], [78047460, 78047576], [78047663, 78047811], [78050201, 78050340], [78097534, 78098561]]	None
ENST00000476195	[[78046702, 78046754], [78047460, 78047573], [78047663, 78047811], [78050201, 78050340], [78050451, 78050728]]	None
ENST00000474746	[[78047502, 78047573], [78047663, 78047811], [78050201, 78050340], [78050451, 78050514], [78050593, 78050744]]	None
ENST00000458763	[[78142666, 78142995], [78148269, 78148360]]	None
NM_015534	[[78028100, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78045313], [78046682, 78046754], [78047460, 78047576], [78047663, 78047811], [78050201, 78050340], [78097534, 78099090], [78105133, 78105287], [78107068, 78107131], [78107206, 78107340], [78148269, 78148343]]	[[78031324, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78045313], [78046682, 78046754], [78047460, 78047576], [78047663, 78047811], [78050201, 78050340], [78097534, 78099039]]
NM_001308237	[[78028100, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78045313], [78046682, 78046754], [78047460, 78047576], [78047663, 78047811], [78050201, 78050340], [78105133, 78105287], [78107068, 78107131], [78107206, 78107340], [78148946, 78149112]]	[[78031324, 78031469], [78031765, 78031866], [78034016, 78034151], [78041752, 78041905], [78044458, 78044554], [78045211, 78045313], [78046682, 78046754], [78047460, 78047576], [78047663, 78047811], [78050201, 78050340], [78105133, 78105156]]

Promoter

Chrom	Start	End	Description
chr1	78050720	78050734	CAGE_peak_9_at_ZZZ3_5end
chr1	78148324	78148365	CAGE_peak_2_at_ZZZ3_5end
chr1	78149041	78149142	CAGE_peak_1_at_ZZZ3_5end
chr1	78149157	78149168	CAGE_peak_4_at_ZZZ3_5end
chr1	78149224	78149235	CAGE_peak_3_at_ZZZ3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I077975	77975531	77981032	2.3	[{'connected_gene': 'GIPC2', 'score': 558.59}, {'connected_gene': 'DNAJB4', 'score': 550.77}, {'connected_gene': 'FUBP1', 'score': 550.77}, {'connected_gene': 'NSRP1P1', 'score': 16.28}, {'connected_gene': 'ENSG00000273338', 'score': 12.57}, {'connected_gene': 'USP33', 'score': 10.11}, {'connected_gene': 'ZZZ3', 'score': 9.74}, {'connected_gene': 'NEXN', 'score': 6.34}, {'connected_gene': 'NEXN-AS1', 'score': 0.17}]
chr1	GH01I077904	77904171	77905371	0.31	[{'connected_gene': 'MIGA1', 'score': 10.12}, {'connected_gene': 'ACTG1P21', 'score': 10.12}, {'connected_gene': 'RNA5SP21', 'score': 10.11}, {'connected_gene': 'ZZZ3', 'score': 9.75}, {'connected_gene': 'GIPC2', 'score': 7.95}, {'connected_gene': 'NEXN', 'score': 7.14}, {'connected_gene': 'NEXN-AS1', 'score': 0.37}, {'connected_gene': 'DNAJB4', 'score': 0.19}]
chr1	GH01I077425	77425658	77426005	0.33	[{'connected_gene': 'AK5', 'score': 10.61}, {'connected_gene': 'MIGA1', 'score': 3.46}, {'connected_gene': 'ZZZ3', 'score': 1.25}, {'connected_gene': 'GC01P077421', 'score': 0.44}, {'connected_gene': 'GC01P077502', 'score': 0.18}]
chr1	GH01I077533	77533524	77541931	1.26	[{'connected_gene': 'AK5', 'score': 13.43}, {'connected_gene': 'ZZZ3', 'score': 10.74}, {'connected_gene': 'FUBP1', 'score': 5.46}, {'connected_gene': 'GC01P077502', 'score': 0.28}, {'connected_gene': 'GC01P077577', 'score': 0.28}]
chr1	GH01I077509	77509377	77516460	1.33	[{'connected_gene': 'AK5', 'score': 16.52}, {'connected_gene': 'ENSG00000233099', 'score': 10.82}, {'connected_gene': 'RNU7-8P', 'score': 10.67}, {'connected_gene': 'ZZZ3', 'score': 10.14}, {'connected_gene': 'GIPC2', 'score': 5.77}, {'connected_gene': 'FUBP1', 'score': 4.47}, {'connected_gene': 'GC01P077502', 'score': 0.39}, {'connected_gene': 'GC01P077577', 'score': 0.21}]
chr1	GH01I077564	77564506	77565063	0.4	[{'connected_gene': 'AK5', 'score': 10.77}, {'connected_gene': 'RNU7-8P', 'score': 10.01}, {'connected_gene': 'GC01P077577', 'score': 0.39}, {'connected_gene': 'GC01P077502', 'score': 0.21}, {'connected_gene': 'ZZZ3', 'score': 0.13}]
chr1	GH01I077680	77680898	77684896	2.1	[{'connected_gene': 'ZZZ3', 'score': 575.81}, {'connected_gene': 'FUBP1', 'score': 48.24}, {'connected_gene': 'RPL17P6', 'score': 33.4}, {'connected_gene': 'ENSG00000273338', 'score': 10.64}, {'connected_gene': 'NEXN', 'score': 10.3}, {'connected_gene': 'GIPC2', 'score': 7.92}, {'connected_gene': 'AK5', 'score': 7.31}, {'connected_gene': 'DNAJB4', 'score': 6.49}, {'connected_gene': 'RN7SL370P', 'score': 0.28}]
chr1	GH01I077542	77542564	77544214	0.52	[{'connected_gene': 'ZZZ3', 'score': 21.8}, {'connected_gene': 'FUBP1', 'score': 15.31}, {'connected_gene': 'AK5', 'score': 12.83}, {'connected_gene': 'RPL17P6', 'score': 10.67}, {'connected_gene': 'GC01P077577', 'score': 0.29}, {'connected_gene': 'GC01P077502', 'score': 0.26}]
chr1	GH01I077591	77591001	77591600	0.59	[{'connected_gene': 'ZZZ3', 'score': 10.6}, {'connected_gene': 'AK5', 'score': 7.64}, {'connected_gene': 'GC01P077577', 'score': 0.39}, {'connected_gene': 'RNA5SP20', 'score': 0.34}]
chr1	GH01I077604	77604916	77606348	0.94	[{'connected_gene': 'ZZZ3', 'score': 11.44}, {'connected_gene': 'AK5', 'score': 7.76}, {'connected_gene': 'RNA5SP20', 'score': 0.44}, {'connected_gene': 'GC01P077577', 'score': 0.31}]
chr1	GH01I077945	77945486	77945689	0.51	[{'connected_gene': 'ZZZ3', 'score': 9.85}, {'connected_gene': 'DNAJB4', 'score': 0.29}, {'connected_gene': 'FUBP1', 'score': 0.29}, {'connected_gene': 'NEXN-AS1', 'score': 0.22}, {'connected_gene': 'NEXN', 'score': 0.22}]
chr1	GH01I077947	77947335	77947604	0.71	[{'connected_gene': 'ZZZ3', 'score': 9.85}, {'connected_gene': 'DNAJB4', 'score': 0.29}, {'connected_gene': 'FUBP1', 'score': 0.29}, {'connected_gene': 'NEXN-AS1', 'score': 0.22}, {'connected_gene': 'NEXN', 'score': 0.22}]
chr1	GH01I077946	77946449	77946668	0.51	[{'connected_gene': 'ZZZ3', 'score': 9.85}, {'connected_gene': 'DNAJB4', 'score': 0.29}, {'connected_gene': 'FUBP1', 'score': 0.29}, {'connected_gene': 'NEXN-AS1', 'score': 0.22}, {'connected_gene': 'NEXN', 'score': 0.22}]
chr1	GH01I077640	77639733	77639792	0.68	[{'connected_gene': 'ZZZ3', 'score': 560.9}, {'connected_gene': 'RN7SL370P', 'score': 0.44}, {'connected_gene': 'RNA5SP20', 'score': 0.34}]
chr1	GH01I077639	77639196	77639345	0.31	[{'connected_gene': 'ZZZ3', 'score': 10.9}, {'connected_gene': 'RN7SL370P', 'score': 0.44}, {'connected_gene': 'RNA5SP20', 'score': 0.34}]
chr1	GH01I077655	77655456	77655605	0.7	[{'connected_gene': 'ZZZ3', 'score': 12.19}, {'connected_gene': 'RN7SL370P', 'score': 0.39}]
chr1	GH01I077677	77677917	77680658	0.75	[{'connected_gene': 'ZZZ3', 'score': 0.77}, {'connected_gene': 'RN7SL370P', 'score': 0.29}]
chr1	GH01I077561	77561254	77561547	0.22	[{'connected_gene': 'ZZZ3', 'score': 10.34}, {'connected_gene': 'RNU7-8P', 'score': 9.55}, {'connected_gene': 'GIPC2', 'score': 6.92}, {'connected_gene': 'MIGA1', 'score': 2.32}, {'connected_gene': 'GC01P077577', 'score': 0.37}, {'connected_gene': 'GC01P077502', 'score': 0.22}]
chr1	GH01I077529	77529611	77531013	0.2	[{'connected_gene': 'ZZZ3', 'score': 9.66}, {'connected_gene': 'RNU7-8P', 'score': 9.51}, {'connected_gene': 'AK5', 'score': 8.15}, {'connected_gene': 'GC01P077502', 'score': 0.31}, {'connected_gene': 'GC01P077577', 'score': 0.25}]
chr1	GH01I077952	77952257	77953141	0.31	[{'connected_gene': 'ZZZ3', 'score': 10.41}, {'connected_gene': 'ACTG1P21', 'score': 9.62}, {'connected_gene': 'RNA5SP21', 'score': 9.62}, {'connected_gene': 'MIGA1', 'score': 9.62}, {'connected_gene': 'NEXN', 'score': 5.56}, {'connected_gene': 'DNAJB4', 'score': 0.31}, {'connected_gene': 'FUBP1', 'score': 0.31}, {'connected_gene': 'NEXN-AS1', 'score': 0.21}]
chr1	GH01I077756	77756998	77760552	2.03	[{'connected_gene': 'USP33', 'score': 550.77}, {'connected_gene': 'AK5', 'score': 7.31}, {'connected_gene': 'FUBP1', 'score': 4.9}, {'connected_gene': 'ZZZ3', 'score': 0.18}]
chr1	GH01I077671	77671712	77673346	0.54	[{'connected_gene': 'USP33', 'score': 10.71}, {'connected_gene': 'AK5', 'score': 7.32}, {'connected_gene': 'GIPC2', 'score': 5.31}, {'connected_gene': 'ZZZ3', 'score': 0.39}, {'connected_gene': 'RN7SL370P', 'score': 0.31}]
chr1	GH01I077673	77673401	77673600	0.43	[{'connected_gene': 'USP33', 'score': 10.71}, {'connected_gene': 'ZZZ3', 'score': 0.44}, {'connected_gene': 'RN7SL370P', 'score': 0.31}]
chr1	GH01I078002	78002645	78011212	2.76	[{'connected_gene': 'DNAJB4', 'score': 561.9}, {'connected_gene': 'NSRP1P1', 'score': 25.46}, {'connected_gene': 'FUBP1', 'score': 23.06}, {'connected_gene': 'ENSG00000273338', 'score': 13.03}, {'connected_gene': 'USP33', 'score': 11.91}, {'connected_gene': 'ZZZ3', 'score': 9.73}, {'connected_gene': 'GIPC2', 'score': 7.43}, {'connected_gene': 'NEXN', 'score': 6.05}, {'connected_gene': 'LOC100131495', 'score': 0.28}]
chr1	GH01I078619	78619040	78622863	1.86	[{'connected_gene': 'IFI44L', 'score': 550.77}, {'connected_gene': 'ZZZ3', 'score': 53.71}, {'connected_gene': 'ENSG00000273338', 'score': 42.24}, {'connected_gene': 'NSRP1P1', 'score': 38.95}, {'connected_gene': 'FUBP1', 'score': 37.61}, {'connected_gene': 'USP33', 'score': 20.4}, {'connected_gene': 'IFI44', 'score': 12.52}]
chr1	GH01I077686	77686783	77688200	0.72	[{'connected_gene': 'ACTG1P21', 'score': 10.42}, {'connected_gene': 'RNA5SP21', 'score': 10.41}, {'connected_gene': 'MIGA1', 'score': 10.41}, {'connected_gene': 'AK5', 'score': 10.23}, {'connected_gene': 'GIPC2', 'score': 8.88}, {'connected_gene': 'ZZZ3', 'score': 0.77}, {'connected_gene': 'USP33', 'score': 0.19}]
chr1	GH01I077900	77900796	77900945	0.74	[{'connected_gene': 'ACTG1P21', 'score': 10.52}, {'connected_gene': 'RNA5SP21', 'score': 10.52}, {'connected_gene': 'MIGA1', 'score': 10.52}, {'connected_gene': 'ZZZ3', 'score': 9.65}, {'connected_gene': 'NEXN-AS1', 'score': 0.39}, {'connected_gene': 'NEXN', 'score': 0.39}, {'connected_gene': 'DNAJB4', 'score': 0.18}]
chr1	GH01I077882	77882438	77882743	0.26	[{'connected_gene': 'GC01P077888', 'score': 550.77}, {'connected_gene': 'PIR49289', 'score': 550.77}, {'connected_gene': 'GC01P077899', 'score': 550.77}, {'connected_gene': 'GC01P077889', 'score': 550.77}, {'connected_gene': 'GC01P077900', 'score': 550.77}, {'connected_gene': 'MIGA1', 'score': 3.09}, {'connected_gene': 'ZZZ3', 'score': 1.63}, {'connected_gene': 'NEXN-AS1', 'score': 0.44}, {'connected_gene': 'HSPE1P25', 'score': 0.31}]
chr1	GH01I077039	77039356	77040877	0.59	[{'connected_gene': 'ENSG00000230498', 'score': 11.93}, {'connected_gene': 'ZZZ3', 'score': 5.24}, {'connected_gene': 'MIR7156', 'score': 0.34}, {'connected_gene': 'GC01P076887', 'score': 0.1}, {'connected_gene': 'ST6GALNAC5', 'score': 0.09}]