PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000503771	[[45265957, 45267770]]	[[45266616, 45267519]]
NM_015444	[[45265955, 45267814]]	[[45266616, 45267519]]

Promoter

Chrom	Start	End	Description
chr3	45266600	45266635	CAGE_peak_2_at_TMEM158_5end
chr3	45266648	45266677	CAGE_peak_3_at_TMEM158_5end
chr3	45267760	45267826	CAGE_peak_1_at_TMEM158_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I045130	45130418	45141564	1.72	[{'connected_gene': 'ZNF502', 'score': 25.82}, {'connected_gene': 'ZNF852', 'score': 25.25}, {'connected_gene': 'RN7SL145P', 'score': 24.84}, {'connected_gene': 'ZNF35', 'score': 19.15}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'RNU5B-3P', 'score': 10.74}, {'connected_gene': 'CLEC3B', 'score': 10.71}, {'connected_gene': 'TMEM158', 'score': 10.51}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZDHHC3', 'score': 10.13}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'ENSG00000202268', 'score': 9.78}, {'connected_gene': 'CDCP1', 'score': 9.36}, {'connected_gene': 'LOC105377059', 'score': 0.2}]
chr3	GH03I045052	45052688	45066370	1.72	[{'connected_gene': 'ZNF502', 'score': 29.2}, {'connected_gene': 'ZNF852', 'score': 25.25}, {'connected_gene': 'RN7SL145P', 'score': 24.84}, {'connected_gene': 'CLEC3B', 'score': 19.26}, {'connected_gene': 'ZNF35', 'score': 19.16}, {'connected_gene': 'CDCP1', 'score': 16.37}, {'connected_gene': 'ZNF197', 'score': 15.66}, {'connected_gene': 'ZNF660', 'score': 15.3}, {'connected_gene': 'EXOSC7', 'score': 12.21}, {'connected_gene': 'RNU5B-3P', 'score': 11.07}, {'connected_gene': 'TMEM158', 'score': 10.63}, {'connected_gene': 'ENSG00000202268', 'score': 10.23}, {'connected_gene': 'ZDHHC3', 'score': 10.2}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'LIMD1', 'score': 9.48}, {'connected_gene': 'TMEM42', 'score': 6.46}, {'connected_gene': 'KIAA1143', 'score': 5.3}, {'connected_gene': 'ZNF501', 'score': 4.21}, {'connected_gene': 'LOC105377059', 'score': 0.44}]
chr3	GH03I045103	45103514	45107225	1.45	[{'connected_gene': 'ZNF502', 'score': 17.76}, {'connected_gene': 'RN7SL145P', 'score': 16.63}, {'connected_gene': 'ZNF852', 'score': 14.04}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'TMEM158', 'score': 4.98}, {'connected_gene': 'CDCP1', 'score': 1.67}, {'connected_gene': 'LOC105377059', 'score': 0.28}]
chr3	GH03I045090	45090818	45094622	1.34	[{'connected_gene': 'ZNF502', 'score': 17.81}, {'connected_gene': 'ZNF197', 'score': 13.35}, {'connected_gene': 'FYCO1', 'score': 12.84}, {'connected_gene': 'RN7SL145P', 'score': 12.69}, {'connected_gene': 'CDCP1', 'score': 11.7}, {'connected_gene': 'LIMD1', 'score': 11.2}, {'connected_gene': 'TMEM158', 'score': 10.7}, {'connected_gene': 'XCR1', 'score': 10.29}, {'connected_gene': 'EXOSC7', 'score': 4.55}, {'connected_gene': 'LOC105377059', 'score': 0.34}]
chr3	GH03I045203	45203749	45204880	0.69	[{'connected_gene': 'ZNF35', 'score': 5.89}, {'connected_gene': 'CDCP1', 'score': 4.39}, {'connected_gene': 'LOC101928636', 'score': 0.77}, {'connected_gene': 'TMEM158', 'score': 0.34}]
chr3	GH03I045040	45040601	45041200	1.25	[{'connected_gene': 'CLEC3B', 'score': 11.24}, {'connected_gene': 'EXOSC7', 'score': 11.17}, {'connected_gene': 'TMEM158', 'score': 10.76}, {'connected_gene': 'LARS2-AS1', 'score': 10.46}, {'connected_gene': 'CDCP1', 'score': 10.35}, {'connected_gene': 'LIMD1', 'score': 10.16}, {'connected_gene': 'ENSG00000202268', 'score': 9.63}, {'connected_gene': 'RNU5B-3P', 'score': 0.44}, {'connected_gene': 'LOC105377059', 'score': 0.31}]
chr3	GH03I045042	45042249	45042285	0.76	[{'connected_gene': 'CLEC3B', 'score': 11.23}, {'connected_gene': 'EXOSC7', 'score': 11.17}, {'connected_gene': 'TMEM158', 'score': 11.02}, {'connected_gene': 'LARS2-AS1', 'score': 10.46}, {'connected_gene': 'CDCP1', 'score': 10.36}, {'connected_gene': 'LIMD1', 'score': 10.16}, {'connected_gene': 'ENSG00000202268', 'score': 9.98}, {'connected_gene': 'RNU5B-3P', 'score': 0.44}, {'connected_gene': 'LOC105377059', 'score': 0.31}]
chr3	GH03I045218	45218222	45219829	1.07	[{'connected_gene': 'CDCP1', 'score': 10.79}, {'connected_gene': 'ENSG00000202268', 'score': 10.56}, {'connected_gene': 'CLEC3B', 'score': 10.39}, {'connected_gene': 'RNU5B-3P', 'score': 10.32}, {'connected_gene': 'LINC00694', 'score': 4.88}, {'connected_gene': 'CXCR6', 'score': 4.61}, {'connected_gene': 'TMEM158', 'score': 4.51}, {'connected_gene': 'LOC101928636', 'score': 0.37}]
chr3	GH03I045084	45084209	45086558	0.97	[{'connected_gene': 'CDCP1', 'score': 10.98}, {'connected_gene': 'TMEM158', 'score': 10.6}, {'connected_gene': 'ZNF660', 'score': 10.2}, {'connected_gene': 'RNU5B-3P', 'score': 9.92}, {'connected_gene': 'CLEC3B', 'score': 9.87}, {'connected_gene': 'LIMD1', 'score': 9.31}, {'connected_gene': 'EXOSC7', 'score': 5.37}, {'connected_gene': 'LOC105377059', 'score': 0.37}]
chr3	GH03I045099	45099326	45099485	0.36	[{'connected_gene': 'CDCP1', 'score': 11.71}, {'connected_gene': 'TMEM158', 'score': 10.71}, {'connected_gene': 'ENSG00000202268', 'score': 9.94}, {'connected_gene': 'LOC105377059', 'score': 0.29}]
chr3	GH03I045071	45071517	45072491	0.49	[{'connected_gene': 'CDCP1', 'score': 10.73}, {'connected_gene': 'TMEM158', 'score': 10.46}, {'connected_gene': 'LOC105377059', 'score': 0.77}]
chr3	GH03I045100	45100752	45101555	1.24	[{'connected_gene': 'CDCP1', 'score': 11.58}, {'connected_gene': 'TMEM158', 'score': 10.27}, {'connected_gene': 'LOC105377059', 'score': 0.29}]
chr3	GH03I045088	45088385	45089537	0.74	[{'connected_gene': 'CDCP1', 'score': 11.67}, {'connected_gene': 'TMEM158', 'score': 10.29}, {'connected_gene': 'LOC105377059', 'score': 0.34}]
chr3	GH03I045101	45100170	45100535	0.53	[{'connected_gene': 'CDCP1', 'score': 11.58}, {'connected_gene': 'TMEM158', 'score': 10.27}, {'connected_gene': 'LOC105377059', 'score': 0.29}]
chr3	GH03I045097	45097395	45097588	0.52	[{'connected_gene': 'CDCP1', 'score': 11.71}, {'connected_gene': 'TMEM158', 'score': 10.71}, {'connected_gene': 'LOC105377059', 'score': 0.31}]
chr3	GH03I045191	45191390	45192566	0.71	[{'connected_gene': 'CDCP1', 'score': 16.09}, {'connected_gene': 'TMEM158', 'score': 12.23}, {'connected_gene': 'ENSG00000202268', 'score': 10.52}, {'connected_gene': 'LOC101928636', 'score': 0.44}, {'connected_gene': 'RPS24P8', 'score': 0.29}]
chr3	GH03I045165	45165590	45170898	1.73	[{'connected_gene': 'CDCP1', 'score': 19.59}, {'connected_gene': 'TMEM158', 'score': 10.91}, {'connected_gene': 'ENSG00000202268', 'score': 10.14}, {'connected_gene': 'LARS2-AS1', 'score': 9.28}, {'connected_gene': 'SLC6A20', 'score': 4.96}, {'connected_gene': 'LIMD1', 'score': 1.48}, {'connected_gene': 'RPS24P8', 'score': 0.44}, {'connected_gene': 'LOC101928636', 'score': 0.29}]
chr3	GH03I045116	45116235	45116628	0.46	[{'connected_gene': 'CDCP1', 'score': 20.28}, {'connected_gene': 'TMEM158', 'score': 10.41}, {'connected_gene': 'RNU5B-3P', 'score': 10.33}, {'connected_gene': 'CLEC3B', 'score': 10.29}, {'connected_gene': 'ENSG00000202268', 'score': 9.56}, {'connected_gene': 'LOC105377059', 'score': 0.25}]
chr3	GH03I045205	45205998	45207063	0.2	[{'connected_gene': 'CDCP1', 'score': 4.81}, {'connected_gene': 'LOC101928636', 'score': 0.44}, {'connected_gene': 'TMEM158', 'score': 0.37}]
chr3	GH03I045269	45269566	45270695	0.89	[{'connected_gene': 'ZNF852', 'score': 13.04}, {'connected_gene': 'TMEM158', 'score': 11.24}, {'connected_gene': 'ZNF35', 'score': 10.77}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'RN7SL145P', 'score': 10.05}, {'connected_gene': 'ZNF502', 'score': 9.91}, {'connected_gene': 'CCR3', 'score': 4.04}, {'connected_gene': 'ENSG00000202268', 'score': 0.39}, {'connected_gene': 'GC03M045255', 'score': 0.39}, {'connected_gene': 'LOC105377061', 'score': 0.28}]
chr3	GH03I045112	45112800	45114303	1.31	[{'connected_gene': 'TMEM158', 'score': 6.57}, {'connected_gene': 'CDCP1', 'score': 0.29}, {'connected_gene': 'LOC105377059', 'score': 0.25}]
chr3	GH03I045196	45196184	45197829	0.31	[{'connected_gene': 'TMEM158', 'score': 4.57}, {'connected_gene': 'CDCP1', 'score': 4.38}, {'connected_gene': 'LOC101928636', 'score': 0.77}, {'connected_gene': 'RPS24P8', 'score': 0.28}]
chr3	GH03I045148	45148665	45149741	0.2	[{'connected_gene': 'TMEM158', 'score': 10.3}, {'connected_gene': 'CDCP1', 'score': 8.38}, {'connected_gene': 'RPS24P8', 'score': 0.39}]
chr3	GH03I045046	45046508	45047313	0.49	[{'connected_gene': 'TMEM158', 'score': 10.91}, {'connected_gene': 'CDCP1', 'score': 10.54}, {'connected_gene': 'ENSG00000202268', 'score': 9.66}, {'connected_gene': 'RNU5B-3P', 'score': 0.39}, {'connected_gene': 'LOC105377059', 'score': 0.34}]
chr3	GH03I045362	45362230	45363676	0.43	[{'connected_gene': 'TMEM158', 'score': 10.35}, {'connected_gene': 'LARS2', 'score': 7.75}, {'connected_gene': 'LOC105377062', 'score': 0.37}, {'connected_gene': 'GC03M045381', 'score': 0.37}]
chr3	GH03I045223	45223549	45226801	2.07	[{'connected_gene': 'TMEM158', 'score': 558.24}, {'connected_gene': 'LINC00694', 'score': 4.88}, {'connected_gene': 'CXCR6', 'score': 4.82}, {'connected_gene': 'LOC101928636', 'score': 0.31}]
chr3	GH03I045210	45210383	45211278	1.31	[{'connected_gene': 'TMEM158', 'score': 6.52}, {'connected_gene': 'LOC101928636', 'score': 0.39}]
chr3	GH03I045224	45223001	45223200	0.4	[{'connected_gene': 'TMEM158', 'score': 0.77}, {'connected_gene': 'LOC101928636', 'score': 0.34}]
chr3	GH03I045213	45213528	45215300	0.2	[{'connected_gene': 'TMEM158', 'score': 5.94}, {'connected_gene': 'LOC101928636', 'score': 0.39}]
chr3	GH03I045163	45163607	45163796	0.48	[{'connected_gene': 'TMEM158', 'score': 10.89}, {'connected_gene': 'RPS24P8', 'score': 0.77}, {'connected_gene': 'LOC101928636', 'score': 0.28}]
chr3	GH03I045252	45252973	45254098	0.52	[{'connected_gene': 'TMEM158', 'score': 9.93}, {'connected_gene': 'ENSG00000202268', 'score': 0.77}, {'connected_gene': 'GC03M045255', 'score': 0.77}]
chr3	GH03I045497	45497847	45498425	0.2	[{'connected_gene': 'LARS2', 'score': 21.78}, {'connected_gene': 'CLEC3B', 'score': 10.65}, {'connected_gene': 'EXOSC7', 'score': 10.64}, {'connected_gene': 'LIMD1', 'score': 10.54}, {'connected_gene': 'TMEM158', 'score': 10.31}, {'connected_gene': 'LARS2-AS1', 'score': 0.39}]
chr3	GH03I045037	45037575	45038298	1.37	[{'connected_gene': 'EXOSC7', 'score': 18.31}, {'connected_gene': 'CLEC3B', 'score': 11.24}, {'connected_gene': 'TMEM158', 'score': 10.76}, {'connected_gene': 'LARS2-AS1', 'score': 10.46}, {'connected_gene': 'CDCP1', 'score': 10.35}, {'connected_gene': 'LIMD1', 'score': 10.16}, {'connected_gene': 'ENSG00000202268', 'score': 9.63}, {'connected_gene': 'ZNF502', 'score': 6.42}, {'connected_gene': 'RNU5B-3P', 'score': 0.77}, {'connected_gene': 'LOC105377059', 'score': 0.29}]
chr3	GH03I045041	45041225	45042223	0.92	[{'connected_gene': 'EXOSC7', 'score': 23.36}, {'connected_gene': 'CLEC3B', 'score': 11.23}, {'connected_gene': 'TMEM158', 'score': 10.77}, {'connected_gene': 'LARS2-AS1', 'score': 10.46}, {'connected_gene': 'CDCP1', 'score': 10.36}, {'connected_gene': 'LIMD1', 'score': 10.16}, {'connected_gene': 'ZNF660', 'score': 10.07}, {'connected_gene': 'ENSG00000202268', 'score': 9.63}, {'connected_gene': 'RNU5B-3P', 'score': 0.44}, {'connected_gene': 'LOC105377059', 'score': 0.31}]
chr3	GH03I045047	45047478	45050278	0.52	[{'connected_gene': 'EXOSC7', 'score': 22.45}, {'connected_gene': 'TMEM158', 'score': 10.91}, {'connected_gene': 'CLEC3B', 'score': 10.8}, {'connected_gene': 'CDCP1', 'score': 10.54}, {'connected_gene': 'ENSG00000202268', 'score': 9.66}, {'connected_gene': 'TMEM42', 'score': 5.36}, {'connected_gene': 'RNU5B-3P', 'score': 0.39}, {'connected_gene': 'LOC105377059', 'score': 0.37}]
chr3	GH03I045043	45043329	45044477	1.49	[{'connected_gene': 'EXOSC7', 'score': 12.53}, {'connected_gene': 'TMEM158', 'score': 11.02}, {'connected_gene': 'CDCP1', 'score': 10.23}, {'connected_gene': 'ENSG00000202268', 'score': 9.98}, {'connected_gene': 'LARS2-AS1', 'score': 9.53}, {'connected_gene': 'RNU5B-3P', 'score': 0.44}, {'connected_gene': 'LOC105377059', 'score': 0.34}]
chr3	GH03I045117	45117655	45128322	1.63	[{'connected_gene': 'RN7SL145P', 'score': 33.45}, {'connected_gene': 'ZNF852', 'score': 31.56}, {'connected_gene': 'LIMD1', 'score': 20.77}, {'connected_gene': 'ZNF502', 'score': 20.45}, {'connected_gene': 'ZNF445', 'score': 18.34}, {'connected_gene': 'TMEM158', 'score': 17.84}, {'connected_gene': 'ZNF197', 'score': 12.87}, {'connected_gene': 'FYCO1', 'score': 12.84}, {'connected_gene': 'CDCP1', 'score': 12.82}, {'connected_gene': 'RNU5B-3P', 'score': 10.33}, {'connected_gene': 'CLEC3B', 'score': 10.32}, {'connected_gene': 'XCR1', 'score': 10.29}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF35', 'score': 10.1}, {'connected_gene': 'ENSG00000202268', 'score': 9.66}, {'connected_gene': 'LOC105377059', 'score': 0.23}]
chr3	GH03I045346	45346480	45346586	0.45	[{'connected_gene': 'LOC105377062', 'score': 550.77}, {'connected_gene': 'TMEM158', 'score': 20.86}, {'connected_gene': 'CDCP1', 'score': 9.75}, {'connected_gene': 'GC03M045381', 'score': 0.28}]
chr3	GH03I045067	45067782	45068000	0.54	[{'connected_gene': 'LOC105377059', 'score': 550.77}, {'connected_gene': 'CDCP1', 'score': 18.75}, {'connected_gene': 'RNU5B-3P', 'score': 10.78}, {'connected_gene': 'CLEC3B', 'score': 10.69}, {'connected_gene': 'TMEM158', 'score': 10.6}, {'connected_gene': 'ENSG00000202268', 'score': 10.24}]
chr3	GH03I045066	45066630	45066770	0.86	[{'connected_gene': 'LOC105377059', 'score': 550.77}, {'connected_gene': 'RNU5B-3P', 'score': 10.78}, {'connected_gene': 'CLEC3B', 'score': 10.69}, {'connected_gene': 'CDCP1', 'score': 10.69}, {'connected_gene': 'TMEM158', 'score': 10.6}, {'connected_gene': 'ENSG00000202268', 'score': 10.24}, {'connected_gene': 'EXOSC7', 'score': 7.44}]
chr3	GH03I045068	45067001	45067200	0.4	[{'connected_gene': 'LOC105377059', 'score': 550.77}, {'connected_gene': 'RNU5B-3P', 'score': 10.78}, {'connected_gene': 'CLEC3B', 'score': 10.69}, {'connected_gene': 'CDCP1', 'score': 10.69}, {'connected_gene': 'TMEM158', 'score': 10.6}, {'connected_gene': 'ENSG00000202268', 'score': 10.24}]
chr3	GH03I045198	45198249	45201384	1.33	[{'connected_gene': 'LOC101928636', 'score': 550.77}, {'connected_gene': 'TMEM158', 'score': 6.33}, {'connected_gene': 'CDCP1', 'score': 5.06}, {'connected_gene': 'RPS24P8', 'score': 0.28}]
chr3	GH03I045206	45205249	45205398	0.94	[{'connected_gene': 'LOC101928636', 'score': 0.44}, {'connected_gene': 'TMEM158', 'score': 0.34}]
chr3	GH03I045479	45479095	45481198	0.97	[{'connected_gene': 'LARS2-AS1', 'score': 11.52}, {'connected_gene': 'TMEM158', 'score': 10.4}, {'connected_gene': 'LIMD1', 'score': 10.4}, {'connected_gene': 'CDCP1', 'score': 10.2}, {'connected_gene': 'ENSG00000202268', 'score': 10.08}, {'connected_gene': 'LARS2', 'score': 5.42}]
chr3	GH03I045160	45160844	45161541	0.31	[{'connected_gene': 'RPS24P8', 'score': 550.77}, {'connected_gene': 'TMEM158', 'score': 10.89}, {'connected_gene': 'CDCP1', 'score': 4.92}, {'connected_gene': 'LOC101928636', 'score': 0.28}]
chr3	GH03I045157	45157721	45158884	0.2	[{'connected_gene': 'RPS24P8', 'score': 550.77}, {'connected_gene': 'ENSG00000202268', 'score': 10.65}, {'connected_gene': 'TMEM158', 'score': 10.43}, {'connected_gene': 'CDCP1', 'score': 6.42}]
chr3	GH03I045153	45153677	45155739	0.82	[{'connected_gene': 'ENSG00000202268', 'score': 10.65}, {'connected_gene': 'TMEM158', 'score': 10.42}, {'connected_gene': 'CDCP1', 'score': 7.17}, {'connected_gene': 'ENSG00000236869', 'score': 5.14}, {'connected_gene': 'RPS24P8', 'score': 0.44}]
chr3	GH03I045311	45311424	45313519	0.66	[{'connected_gene': 'ENSG00000202268', 'score': 10.88}, {'connected_gene': 'TMEM158', 'score': 10.36}, {'connected_gene': 'LOC105377061', 'score': 0.77}, {'connected_gene': 'PIR40606', 'score': 0.31}]