PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000332797	[[139094656, 139095039], [139097215, 139097415], [139100958, 139101122], [139106363, 139106518], [139109502, 139109525], [139113885, 139114456]]	[[139094811, 139095039], [139097215, 139097415], [139100958, 139101122], [139106363, 139106518], [139109502, 139109525], [139113885, 139113940]]
NM_015439	[[139094656, 139095039], [139097215, 139097415], [139100958, 139101122], [139106363, 139106518], [139109502, 139109525], [139113885, 139114456]]	[[139094811, 139095039], [139097215, 139097415], [139100958, 139101122], [139106363, 139106518], [139109502, 139109525], [139113885, 139113940]]

Promoter

Chrom	Start	End	Description
chr6	139094884	139094927	CAGE_peak_1_at_CCDC28A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I139027	139027288	139031021	2.21	[{'connected_gene': 'ABRACL', 'score': 569.13}, {'connected_gene': 'GC06M139027', 'score': 550.77}, {'connected_gene': 'HECA', 'score': 6.54}, {'connected_gene': 'CCDC28A', 'score': 1.94}, {'connected_gene': 'GC06P139052', 'score': 0.34}]
chr6	GH06I138779	138779255	138779416	0.23	[{'connected_gene': 'NHSL1', 'score': 12.15}, {'connected_gene': 'FLJ46906', 'score': 10.3}, {'connected_gene': 'CCDC28A', 'score': 0.44}, {'connected_gene': 'GVQW2', 'score': 0.44}, {'connected_gene': 'ECT2L', 'score': 0.37}]
chr6	GH06I138591	138591812	138596567	1.17	[{'connected_gene': 'FLJ46906', 'score': 23.09}, {'connected_gene': 'NHSL1', 'score': 17.37}, {'connected_gene': 'CCDC28A', 'score': 12.29}, {'connected_gene': 'PERP', 'score': 10.19}, {'connected_gene': 'LOC100129577', 'score': 0.22}, {'connected_gene': 'ENSG00000274594', 'score': 0.12}]
chr6	GH06I138590	138590984	138591153	0.79	[{'connected_gene': 'FLJ46906', 'score': 22.21}, {'connected_gene': 'CCDC28A', 'score': 12.29}, {'connected_gene': 'NHSL1', 'score': 12.21}, {'connected_gene': 'PERP', 'score': 10.19}, {'connected_gene': 'LOC100129577', 'score': 0.22}, {'connected_gene': 'ENSG00000274594', 'score': 0.13}]
chr6	GH06I138802	138802244	138806564	0.31	[{'connected_gene': 'ECT2L', 'score': 6.68}, {'connected_gene': 'REPS1', 'score': 6.43}, {'connected_gene': 'CCDC28A', 'score': 5.04}, {'connected_gene': 'CCRL1P1', 'score': 0.37}]
chr6	GH06I138795	138795609	138796730	1.46	[{'connected_gene': 'ECT2L', 'score': 561.92}, {'connected_gene': 'CCDC28A', 'score': 0.34}, {'connected_gene': 'CCRL1P1', 'score': 0.31}]
chr6	GH06I138768	138768612	138769954	0.54	[{'connected_gene': 'ECT2L', 'score': 10.26}, {'connected_gene': 'CCDC28A', 'score': 0.77}, {'connected_gene': 'GVQW2', 'score': 0.77}, {'connected_gene': 'GC06P138761', 'score': 0.44}]
chr6	GH06I138772	138772671	138774744	2.04	[{'connected_gene': 'CCDC28A', 'score': 556.19}, {'connected_gene': 'GVQW2', 'score': 550.77}, {'connected_gene': 'ECT2L', 'score': 10.22}]
chr6	GH06I139257	139257268	139257610	0.45	[{'connected_gene': 'TXLNB', 'score': 9.44}, {'connected_gene': 'CCDC28A', 'score': 1.58}, {'connected_gene': 'LOC102723690', 'score': 0.44}, {'connected_gene': 'ENSG00000272446', 'score': 0.37}]