PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr11	74408877	74408901	CAGE_peak_4_at_CHRDL2_5end
chr11	74442461	74442481	CAGE_peak_1_at_CHRDL2_5end
chr11	74442489	74442515	CAGE_peak_2_at_CHRDL2_5end
chr11	74442527	74442538	CAGE_peak_3_at_CHRDL2_5end
chr11	74442667	74442670	CAGE_peak_5_at_CHRDL2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I074678	74678149	74679136	0.57	[{'connected_gene': 'RPS12P22', 'score': 15.01}, {'connected_gene': 'KCNE3', 'score': 14.08}, {'connected_gene': 'RANP3', 'score': 11.94}, {'connected_gene': 'CHRDL2', 'score': 11.13}, {'connected_gene': 'RNF169', 'score': 10.3}, {'connected_gene': 'RN7SKP297', 'score': 0.44}, {'connected_gene': 'GC11P074653', 'score': 0.31}]
chr11	GH11I074671	74671455	74674852	1.59	[{'connected_gene': 'CHRDL2', 'score': 16.96}, {'connected_gene': 'C2CD3', 'score': 12.57}, {'connected_gene': 'RPS12P22', 'score': 4.95}, {'connected_gene': 'KCNE3', 'score': 4.7}, {'connected_gene': 'RN7SKP297', 'score': 0.39}, {'connected_gene': 'GC11P074653', 'score': 0.34}]
chr11	GH11I074753	74753513	74756344	1.2	[{'connected_gene': 'CHRDL2', 'score': 11.24}, {'connected_gene': 'XRRA1', 'score': 8.94}, {'connected_gene': 'RNF169', 'score': 8.55}, {'connected_gene': 'POLD3', 'score': 1.87}, {'connected_gene': 'ENSG00000278879', 'score': 0.18}]
chr11	GH11I074731	74731254	74731313	0.76	[{'connected_gene': 'CHRDL2', 'score': 550.77}, {'connected_gene': 'XRRA1', 'score': 37.57}, {'connected_gene': 'MIR4696', 'score': 0.39}]
chr11	GH11I074580	74580550	74582910	0.96	[{'connected_gene': 'CHRDL2', 'score': 5.72}, {'connected_gene': 'LOC105369386', 'score': 0.44}, {'connected_gene': 'GC11M074646', 'score': 0.2}, {'connected_gene': 'POLD3', 'score': 0.17}]
chr11	GH11I074636	74636276	74637424	1.03	[{'connected_gene': 'CHRDL2', 'score': 5.56}, {'connected_gene': 'GC11M074646', 'score': 0.39}, {'connected_gene': 'LOC105369386', 'score': 0.21}, {'connected_gene': 'POLD3', 'score': 0.11}]
chr11	GH11I074648	74648411	74651141	0.66	[{'connected_gene': 'CHRDL2', 'score': 5.55}, {'connected_gene': 'GC11M074646', 'score': 0.77}, {'connected_gene': 'RANP3', 'score': 0.77}, {'connected_gene': 'POLD3', 'score': 0.1}]
chr11	GH11I074732	74731416	74731475	0.73	[{'connected_gene': 'CHRDL2', 'score': 550.77}, {'connected_gene': 'RPL36AP38', 'score': 0.44}]
chr11	GH11I074611	74611400	74612200	0.8	[{'connected_gene': 'CHRDL2', 'score': 15.88}, {'connected_gene': 'KCNE3', 'score': 9.89}, {'connected_gene': 'ENSG00000254928', 'score': 9.89}, {'connected_gene': 'POLD3', 'score': 4.92}, {'connected_gene': 'LOC105369386', 'score': 0.28}, {'connected_gene': 'GC11M074646', 'score': 0.28}]
chr11	GH11I074685	74685959	74688945	0.71	[{'connected_gene': 'CHRDL2', 'score': 16.97}, {'connected_gene': 'KCNE3', 'score': 15.37}, {'connected_gene': 'RANP3', 'score': 12.14}, {'connected_gene': 'ENSG00000254928', 'score': 9.61}, {'connected_gene': 'RN7SKP297', 'score': 0.77}, {'connected_gene': 'GC11M074700', 'score': 0.39}]
chr11	GH11I074707	74707400	74708705	0.49	[{'connected_gene': 'XRRA1', 'score': 34.45}, {'connected_gene': 'CHRDL2', 'score': 11.11}, {'connected_gene': 'RANP3', 'score': 10.54}, {'connected_gene': 'ENSG00000279353', 'score': 0.44}, {'connected_gene': 'GC11M074716', 'score': 0.44}]
chr11	GH11I074709	74709816	74711021	1.04	[{'connected_gene': 'XRRA1', 'score': 7.63}, {'connected_gene': 'GC11M074716', 'score': 0.44}, {'connected_gene': 'ENSG00000279353', 'score': 0.39}, {'connected_gene': 'CHRDL2', 'score': 0.34}]
chr11	GH11I074725	74725216	74727285	0.98	[{'connected_gene': 'XRRA1', 'score': 48.9}, {'connected_gene': 'RNF169', 'score': 11.54}, {'connected_gene': 'RPL31P46', 'score': 4.23}, {'connected_gene': 'MIR4696', 'score': 0.44}, {'connected_gene': 'CHRDL2', 'score': 0.44}]
chr11	GH11I074591	74591470	74593994	2.03	[{'connected_gene': 'POLD3', 'score': 566.24}, {'connected_gene': 'ENSG00000206913', 'score': 12.29}, {'connected_gene': 'RNF169', 'score': 12.01}, {'connected_gene': 'KCNE3', 'score': 10.6}, {'connected_gene': 'ENSG00000254928', 'score': 10.25}, {'connected_gene': 'SNORD15B', 'score': 9.87}, {'connected_gene': 'RN7SL239P', 'score': 9.8}, {'connected_gene': 'CHRDL2', 'score': 5.52}, {'connected_gene': 'LOC105369391', 'score': 4.27}, {'connected_gene': 'LOC105369386', 'score': 0.37}, {'connected_gene': 'GC11M074646', 'score': 0.23}]
chr11	GH11I074682	74682956	74684302	0.83	[{'connected_gene': 'RN7SKP297', 'score': 550.77}, {'connected_gene': 'RANP3', 'score': 12.14}, {'connected_gene': 'CHRDL2', 'score': 11.46}, {'connected_gene': 'KCNE3', 'score': 8.23}, {'connected_gene': 'ENSG00000255440', 'score': 4.02}, {'connected_gene': 'GC11P074653', 'score': 0.29}]
chr11	GH11I074615	74615289	74615840	0.72	[{'connected_gene': 'RANP3', 'score': 11.79}, {'connected_gene': 'CHRDL2', 'score': 5.53}, {'connected_gene': 'GC11M074646', 'score': 0.29}, {'connected_gene': 'LOC105369386', 'score': 0.28}, {'connected_gene': 'POLD3', 'score': 0.13}]
chr11	GH11I074716	74716986	74721813	0.97	[{'connected_gene': 'MIR4696', 'score': 550.77}, {'connected_gene': 'XRRA1', 'score': 36.45}, {'connected_gene': 'GC11M074716', 'score': 0.77}, {'connected_gene': 'CHRDL2', 'score': 0.39}]
chr11	GH11I074566	74566256	74567279	0.49	[{'connected_gene': 'KCNE3', 'score': 11.64}, {'connected_gene': 'ENSG00000254928', 'score': 11.63}, {'connected_gene': 'ENSG00000206913', 'score': 10.47}, {'connected_gene': 'PGM2L1', 'score': 10.32}, {'connected_gene': 'ENSG00000254631', 'score': 10.32}, {'connected_gene': 'CHRDL2', 'score': 5.57}, {'connected_gene': 'LOC105369386', 'score': 0.44}, {'connected_gene': 'POLD3', 'score': 0.19}]
chr11	GH11I074570	74570596	74571763	0.65	[{'connected_gene': 'KCNE3', 'score': 12.16}, {'connected_gene': 'ENSG00000254928', 'score': 12.14}, {'connected_gene': 'ENSG00000206913', 'score': 10.56}, {'connected_gene': 'CHRDL2', 'score': 5.52}, {'connected_gene': 'LOC105369386', 'score': 0.77}, {'connected_gene': 'POLD3', 'score': 0.18}]
chr11	GH11I074702	74702496	74702800	0.89	[{'connected_gene': 'ENSG00000279353', 'score': 0.77}, {'connected_gene': 'GC11M074716', 'score': 0.39}, {'connected_gene': 'CHRDL2', 'score': 0.31}]
chr11	GH11I074698	74698568	74700033	0.82	[{'connected_gene': 'ENSG00000279353', 'score': 550.77}, {'connected_gene': 'GC11M074700', 'score': 550.77}, {'connected_gene': 'XRRA1', 'score': 4.92}, {'connected_gene': 'CHRDL2', 'score': 0.29}]
chr11	GH11I074695	74695735	74698072	1.25	[{'connected_gene': 'GC11M074700', 'score': 550.77}, {'connected_gene': 'POLD3', 'score': 16.16}, {'connected_gene': 'ENSG00000206913', 'score': 12.28}, {'connected_gene': 'RNF169', 'score': 12.14}, {'connected_gene': 'SNORD15B', 'score': 9.87}, {'connected_gene': 'RN7SL239P', 'score': 9.84}, {'connected_gene': 'RPL31P46', 'score': 9.21}, {'connected_gene': 'XRRA1', 'score': 4.56}, {'connected_gene': 'PAAF1', 'score': 4.53}, {'connected_gene': 'RN7SKP297', 'score': 0.39}, {'connected_gene': 'CHRDL2', 'score': 0.29}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000529912	[[74407473, 74407630], [74408249, 74408342], [74408645, 74408739]]	[[74407542, 74407630], [74408249, 74408342], [74408645, 74408739]]
ENST00000525413	[[74407473, 74407630], [74413845, 74414012], [74414349, 74414544], [74415530, 74415680]]	[[74407609, 74407630], [74413845, 74414012], [74414349, 74414544], [74415530, 74415680]]
ENST00000376324	[[74407473, 74407630], [74408249, 74408342], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74429764, 74430348]]	[[74415698, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74429764, 74429899]]
ENST00000263671	[[74407473, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74442220]]	[[74407542, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74441933]]
ENST00000376332	[[74407473, 74407630], [74408249, 74408342], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74442430]]	[[74407553, 74407630], [74408249, 74408342], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74441933]]
ENST00000534159	[[74411966, 74412552], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74442198]]	None
ENST00000528471	[[74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74421893, 74422036], [74429764, 74430348]]	[[74417583, 74417587], [74421893, 74422036], [74429764, 74429899]]
ENST00000534276	[[74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74421893, 74422036], [74424430, 74424524], [74429764, 74430348]]	[[74415698, 74415699], [74417531, 74417587], [74421893, 74422036], [74424430, 74424524], [74429764, 74429899]]
ENST00000528789	[[74413838, 74414012], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74442227]]	[[74413838, 74414012], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74441933]]
NM_001304417	[[74407472, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422412]]	[[74407542, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422130]]
NM_001304390	[[74407472, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74430348]]	[[74407542, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429899]]
NM_001304391	[[74407472, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74430348]]	[[74407542, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429899]]
NM_001304415	[[74407472, 74407630], [74408249, 74408342], [74413838, 74414012], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74430348]]	[[74407553, 74407630], [74408249, 74408342], [74413838, 74414012], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429899]]
NM_001304416	[[74407472, 74407630], [74408249, 74408342], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74429764, 74430348]]	[[74407553, 74407630], [74408249, 74408342], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74421977]]
NM_015424	[[74407472, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74442430]]	[[74407542, 74407630], [74408249, 74408342], [74412636, 74412691], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74441933]]
NM_001278473	[[74407472, 74407630], [74408249, 74408342], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74442430]]	[[74407553, 74407630], [74408249, 74408342], [74413838, 74414012], [74414349, 74414544], [74415530, 74415699], [74417531, 74417587], [74419346, 74419440], [74421893, 74422036], [74424430, 74424524], [74429764, 74429877], [74441851, 74441933]]