PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000269187	[[33688494, 33689708], [33691021, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704663], [33706181, 33706979], [33709076, 33709281]]	[[33689555, 33689708], [33691021, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704663], [33706181, 33706970]]
ENST00000590986	[[33689110, 33689708], [33691021, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704663], [33706181, 33706979], [33709063, 33709344]]	[[33689555, 33689708], [33691021, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704663], [33706181, 33706970]]
ENST00000440549	[[33690962, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704663], [33709076, 33709348]]	[[33691009, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704627]]
ENST00000586829	[[33691018, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702078]]	[[33691018, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702074]]
NM_012319	[[33688493, 33689708], [33691021, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704663], [33706181, 33706979], [33709076, 33709357]]	[[33689555, 33689708], [33691021, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704663], [33706181, 33706970]]
NM_001099406	[[33690962, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704663], [33709076, 33709357]]	[[33691009, 33691212], [33692463, 33692544], [33694059, 33694437], [33696636, 33696742], [33702014, 33702233], [33703457, 33703627], [33704482, 33704627]]

Promoter

Chrom	Start	End	Description
chr18	33702093	33702108	CAGE_peak_4_at_SLC39A6_5end
chr18	33709268	33709380	CAGE_peak_1_at_SLC39A6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr18	GH18I036111	36111685	36113228	0.38	[{'connected_gene': 'ELP2', 'score': 15.21}, {'connected_gene': 'MOCOS', 'score': 11.03}, {'connected_gene': 'FHOD3', 'score': 10.12}, {'connected_gene': 'LOC101927809', 'score': 5.5}, {'connected_gene': 'SLC39A6', 'score': 0.37}, {'connected_gene': 'GC18M036078', 'score': 0.29}]
chr18	GH18I036149	36149840	36154767	0.83	[{'connected_gene': 'ELP2', 'score': 33.35}, {'connected_gene': 'MOCOS', 'score': 20.93}, {'connected_gene': 'LOC791126', 'score': 4.23}, {'connected_gene': 'PIR50550', 'score': 0.77}, {'connected_gene': 'SLC39A6', 'score': 0.34}]
chr18	GH18I036121	36121478	36121627	0.4	[{'connected_gene': 'ELP2', 'score': 15.28}, {'connected_gene': 'MOCOS', 'score': 9.37}, {'connected_gene': 'SLC39A6', 'score': 0.44}, {'connected_gene': 'GC18M036078', 'score': 0.26}]
chr18	GH18I036127	36127934	36133133	2.31	[{'connected_gene': 'ELP2', 'score': 588.47}, {'connected_gene': 'SLC39A6', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 42.41}, {'connected_gene': 'ZNF397', 'score': 24.3}, {'connected_gene': 'KIAA1328', 'score': 11.6}, {'connected_gene': 'LOC101927809', 'score': 10.84}, {'connected_gene': 'MOCOS', 'score': 9.42}, {'connected_gene': 'LOC791126', 'score': 4.2}, {'connected_gene': 'PIR50550', 'score': 0.31}]
chr18	GH18I036115	36115396	36117024	0.2	[{'connected_gene': 'ELP2', 'score': 15.25}, {'connected_gene': 'SLC39A6', 'score': 0.39}, {'connected_gene': 'GC18M036078', 'score': 0.28}]
chr18	GH18I036114	36114418	36114487	0.43	[{'connected_gene': 'ELP2', 'score': 0.39}, {'connected_gene': 'SLC39A6', 'score': 0.37}, {'connected_gene': 'GC18M036078', 'score': 0.28}]
chr18	GH18I036118	36118013	36120364	0.54	[{'connected_gene': 'ELP2', 'score': 15.24}, {'connected_gene': 'LOC105372066', 'score': 5.88}, {'connected_gene': 'SLC39A6', 'score': 0.39}, {'connected_gene': 'GC18M036078', 'score': 0.26}]
chr18	GH18I036109	36109303	36110649	0.56	[{'connected_gene': 'MOCOS', 'score': 19.36}, {'connected_gene': 'FHOD3', 'score': 10.12}, {'connected_gene': 'SLC39A6', 'score': 0.37}, {'connected_gene': 'ELP2', 'score': 0.37}, {'connected_gene': 'GC18M036078', 'score': 0.29}]
chr18	GH18I036110	36110744	36111491	0.2	[{'connected_gene': 'MOCOS', 'score': 20.14}, {'connected_gene': 'FHOD3', 'score': 10.12}, {'connected_gene': 'SLC39A6', 'score': 0.37}, {'connected_gene': 'ELP2', 'score': 0.37}, {'connected_gene': 'GC18M036078', 'score': 0.29}]
chr18	GH18I035732	35732317	35733355	0.54	[{'connected_gene': 'GALNT1', 'score': 5.03}, {'connected_gene': 'SLC39A6', 'score': 4.34}, {'connected_gene': 'ENSG00000267397', 'score': 0.37}, {'connected_gene': 'NRBF2P1', 'score': 0.14}]
chr18	GH18I036125	36125018	36125167	0.4	[{'connected_gene': 'SLC39A6', 'score': 0.77}, {'connected_gene': 'ELP2', 'score': 0.77}, {'connected_gene': 'GC18M036078', 'score': 0.25}]
chr18	GH18I036126	36126991	36127050	0.96	[{'connected_gene': 'SLC39A6', 'score': 550.77}, {'connected_gene': 'ELP2', 'score': 0.77}, {'connected_gene': 'GC18M036078', 'score': 0.25}]
chr18	GH18I035525	35525802	35527006	1	[{'connected_gene': 'SLC39A6', 'score': 5.16}, {'connected_gene': 'INO80C', 'score': 0.31}, {'connected_gene': 'GALNT1', 'score': 0.23}]
chr18	GH18I035155	35155600	35156275	0.8	[{'connected_gene': 'SLC39A6', 'score': 4.13}, {'connected_gene': 'ENSG00000274400', 'score': 0.39}, {'connected_gene': 'PIR47170', 'score': 0.2}]
chr18	GH18I035141	35141656	35143177	0.31	[{'connected_gene': 'MAPRE2', 'score': 5.14}, {'connected_gene': 'ZNF24', 'score': 4.16}, {'connected_gene': 'SLC39A6', 'score': 4.07}, {'connected_gene': 'ENSG00000274400', 'score': 0.77}, {'connected_gene': 'ENSG00000280096', 'score': 0.21}]
chr18	GH18I035613	35613105	35620590	1.13	[{'connected_gene': 'ENSG00000268573', 'score': 24.07}, {'connected_gene': 'GALNT1', 'score': 17.07}, {'connected_gene': 'ZNF397', 'score': 13.78}, {'connected_gene': 'SLC39A6', 'score': 4.89}, {'connected_gene': 'ENSG00000266965', 'score': 0.34}, {'connected_gene': 'LOC105372065', 'score': 0.21}]