PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000338415	[[37571716, 37571994], [37579931, 37580078], [37586722, 37587001], [37594374, 37594551], [37596827, 37596927], [37599498, 37599615], [37599824, 37600465]]	[[37571874, 37571994], [37579931, 37580078], [37586722, 37587001], [37594374, 37594551], [37596827, 37596927], [37599498, 37599615], [37599824, 37599970]]
ENST00000404976	[[37571736, 37571994], [37586722, 37587001], [37594374, 37594551], [37596827, 37596927], [37599498, 37599615], [37599824, 37599885]]	[[37571874, 37571994], [37586722, 37587001], [37594374, 37594551], [37596827, 37596927], [37599498, 37599615], [37599824, 37599885]]
ENST00000537448	[[37571851, 37571994], [37586722, 37587001], [37594374, 37594551], [37596827, 37596927], [37599498, 37599615], [37599824, 37600464]]	[[37571874, 37571994], [37586722, 37587001], [37594374, 37594551], [37596827, 37596927], [37599498, 37599615], [37599824, 37599970]]
ENST00000470075	[[37571870, 37571994], [37579931, 37580078], [37585963, 37586031], [37586722, 37587196]]	None
ENST00000480050	[[37585854, 37586031], [37586722, 37587001], [37594374, 37594551], [37596827, 37596845]]	None
ENST00000469098	[[37594265, 37594551], [37596827, 37596927], [37599498, 37599615], [37599824, 37600173]]	None
ENST00000444022	[[37595423, 37595802], [37596827, 37596927], [37599498, 37599615], [37599824, 37599942]]	[[37595784, 37595802], [37596827, 37596927], [37599498, 37599615], [37599824, 37599942]]
NM_012413	[[37571752, 37571994], [37579931, 37580078], [37586722, 37587001], [37594374, 37594551], [37596827, 37596927], [37599498, 37599615], [37599824, 37600465]]	[[37571874, 37571994], [37579931, 37580078], [37586722, 37587001], [37594374, 37594551], [37596827, 37596927], [37599498, 37599615], [37599824, 37599970]]

Promoter

Chrom	Start	End	Description
chr2	37571765	37571779	CAGE_peak_3_at_QPCT_5end
chr2	37571802	37571814	CAGE_peak_4_at_QPCT_5end
chr2	37571815	37571841	CAGE_peak_2_at_QPCT_5end
chr2	37571845	37571874	CAGE_peak_1_at_QPCT_5end
chr2	37579926	37579956	CAGE_peak_6_at_QPCT_5end
chr2	37594367	37594376	CAGE_peak_12_at_QPCT_5end
chr2	37594377	37594388	CAGE_peak_10_at_QPCT_5end
chr2	37594397	37594409	CAGE_peak_5_at_QPCT_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I037822	37822478	37823843	1.44	[{'connected_gene': 'QPCT', 'score': 3.36}, {'connected_gene': 'CDC42EP3', 'score': 3.2}, {'connected_gene': 'LOC344382', 'score': 0.44}, {'connected_gene': 'LINC00211', 'score': 0.23}]
chr2	GH02I037760	37760201	37763000	0.61	[{'connected_gene': 'QPCT', 'score': 17.26}, {'connected_gene': 'CDC42EP3', 'score': 14.96}, {'connected_gene': 'ENSG00000236572', 'score': 0.37}, {'connected_gene': 'GC02M037793', 'score': 0.29}]
chr2	GH02I037386	37386738	37388807	0.66	[{'connected_gene': 'QPCT', 'score': 10.87}, {'connected_gene': 'LOC101929542', 'score': 10.78}, {'connected_gene': 'PRKD3', 'score': 10.78}, {'connected_gene': 'RNU6-939P', 'score': 10.42}, {'connected_gene': 'RMDN2', 'score': 9.76}, {'connected_gene': 'GC02P037427', 'score': 0.28}]
chr2	GH02I037387	37386364	37386473	0.2	[{'connected_gene': 'QPCT', 'score': 10.87}, {'connected_gene': 'LOC101929542', 'score': 10.78}, {'connected_gene': 'PRKD3', 'score': 10.78}, {'connected_gene': 'RNU6-939P', 'score': 10.43}, {'connected_gene': 'RMDN2', 'score': 9.76}, {'connected_gene': 'GC02P037427', 'score': 0.28}]
chr2	GH02I037342	37342655	37345401	2.05	[{'connected_gene': 'QPCT', 'score': 550.77}, {'connected_gene': 'CEBPZOS', 'score': 20.97}, {'connected_gene': 'CEBPZ', 'score': 15.64}, {'connected_gene': 'EIF2AK2', 'score': 5.19}, {'connected_gene': 'NDUFAF7', 'score': 5.14}, {'connected_gene': 'PRKD3', 'score': 5.09}, {'connected_gene': 'GC02M037332', 'score': 0.39}, {'connected_gene': 'RNU6-939P', 'score': 0.39}]
chr2	GH02I037371	37371345	37372678	0.38	[{'connected_gene': 'QPCT', 'score': 0.31}, {'connected_gene': 'GC02P037427', 'score': 0.23}]
chr2	GH02I037388	37388867	37391854	1.58	[{'connected_gene': 'PRKD3', 'score': 10.97}, {'connected_gene': 'LOC101929542', 'score': 10.97}, {'connected_gene': 'QPCT', 'score': 10.86}, {'connected_gene': 'RNU6-939P', 'score': 10.77}, {'connected_gene': 'CYP1B1', 'score': 10.02}, {'connected_gene': 'RMDN2', 'score': 9.76}, {'connected_gene': 'CDC42EP3', 'score': 4.34}, {'connected_gene': 'EIF2AK2', 'score': 3.03}, {'connected_gene': 'GC02P037427', 'score': 0.29}]
chr2	GH02I037375	37375877	37379187	1.64	[{'connected_gene': 'PRKD3', 'score': 11.02}, {'connected_gene': 'LOC101929542', 'score': 11.02}, {'connected_gene': 'RNU6-939P', 'score': 10.88}, {'connected_gene': 'CDC42EP3', 'score': 9.36}, {'connected_gene': 'RMDN2', 'score': 9.25}, {'connected_gene': 'CYP1B1', 'score': 9.16}, {'connected_gene': 'QPCT', 'score': 3.53}, {'connected_gene': 'GPATCH11', 'score': 1.4}, {'connected_gene': 'GC02P037427', 'score': 0.25}]
chr2	GH02I037395	37395801	37396401	1.11	[{'connected_gene': 'RNU6-939P', 'score': 10.24}, {'connected_gene': 'GC02P037427', 'score': 0.31}, {'connected_gene': 'QPCT', 'score': 0.23}]
chr2	GH02I037379	37379583	37380652	0.63	[{'connected_gene': 'RNU6-939P', 'score': 11.14}, {'connected_gene': 'LOC101929542', 'score': 11.01}, {'connected_gene': 'PRKD3', 'score': 11.01}, {'connected_gene': 'CDC42EP3', 'score': 9.36}, {'connected_gene': 'RMDN2', 'score': 9.25}, {'connected_gene': 'CYP1B1', 'score': 9.16}, {'connected_gene': 'QPCT', 'score': 0.28}, {'connected_gene': 'GC02P037427', 'score': 0.26}]
chr2	GH02I037619	37619930	37620289	0.96	[{'connected_gene': 'CDC42EP3', 'score': 4.66}, {'connected_gene': 'EIF2AK2', 'score': 3.85}, {'connected_gene': 'CYP1B1', 'score': 2.56}, {'connected_gene': 'QPCT', 'score': 1.12}, {'connected_gene': 'GC02P037671', 'score': 0.23}, {'connected_gene': 'GC02M037562', 'score': 0.22}, {'connected_gene': 'LOC105374464', 'score': 0.1}, {'connected_gene': 'GC02P037427', 'score': 0.08}]
chr2	GH02I037416	37416727	37418317	0.4	[{'connected_gene': 'CDC42EP3', 'score': 10.37}, {'connected_gene': 'GC02P037427', 'score': 0.44}, {'connected_gene': 'QPCT', 'score': 0.19}]
chr2	GH02I037414	37414538	37415801	1.02	[{'connected_gene': 'CDC42EP3', 'score': 10.24}, {'connected_gene': 'GC02P037427', 'score': 0.44}, {'connected_gene': 'QPCT', 'score': 0.19}]
chr2	GH02I037664	37664157	37673307	2.63	[{'connected_gene': 'CDC42EP3', 'score': 573.68}, {'connected_gene': 'LOC105374464', 'score': 11.26}, {'connected_gene': 'QPCT', 'score': 5.98}, {'connected_gene': 'CYP1B1', 'score': 1.65}, {'connected_gene': 'GC02P037671', 'score': 0.77}, {'connected_gene': 'GC02M037562', 'score': 0.14}, {'connected_gene': 'GC02P037427', 'score': 0.07}]
chr2	GH02I037633	37633184	37659319	1.62	[{'connected_gene': 'CDC42EP3', 'score': 22.81}, {'connected_gene': 'LOC105374464', 'score': 11.79}, {'connected_gene': 'RNU6-939P', 'score': 9.94}, {'connected_gene': 'QPCT', 'score': 6.09}, {'connected_gene': 'EIF2AK2', 'score': 5.15}, {'connected_gene': 'CEBPZ', 'score': 4.49}, {'connected_gene': 'CYP1B1', 'score': 4.06}, {'connected_gene': 'GC02P037671', 'score': 0.31}, {'connected_gene': 'GC02M037562', 'score': 0.18}, {'connected_gene': 'GC02P037427', 'score': 0.07}]
chr2	GH02I037599	37599186	37602050	1.4	[{'connected_gene': 'LOC105374464', 'score': 10.94}, {'connected_gene': 'CDC42EP3', 'score': 5.28}, {'connected_gene': 'EIF2AK2', 'score': 5.23}, {'connected_gene': 'CYP1B1', 'score': 4.51}, {'connected_gene': 'QPCT', 'score': 1.27}, {'connected_gene': 'GC02M037562', 'score': 0.28}, {'connected_gene': 'GC02P037671', 'score': 0.19}, {'connected_gene': 'GC02P037427', 'score': 0.1}]
chr2	GH02I037622	37622685	37628301	1.52	[{'connected_gene': 'LOC105374464', 'score': 24.71}, {'connected_gene': 'CDC42EP3', 'score': 6.67}, {'connected_gene': 'EIF2AK2', 'score': 5.45}, {'connected_gene': 'LOC101929596', 'score': 4.34}, {'connected_gene': 'QPCT', 'score': 3.63}, {'connected_gene': 'CYP1B1', 'score': 3.3}, {'connected_gene': 'GC02P037671', 'score': 0.25}, {'connected_gene': 'GC02M037562', 'score': 0.21}, {'connected_gene': 'GC02P037427', 'score': 0.08}]
chr2	GH02I037615	37615024	37618357	1.57	[{'connected_gene': 'LOC105374464', 'score': 9.24}, {'connected_gene': 'CDC42EP3', 'score': 5.95}, {'connected_gene': 'QPCT', 'score': 4.75}, {'connected_gene': 'EIF2AK2', 'score': 4.73}, {'connected_gene': 'CYP1B1', 'score': 2.02}, {'connected_gene': 'GC02M037562', 'score': 0.23}, {'connected_gene': 'GC02P037671', 'score': 0.22}, {'connected_gene': 'GC02P037427', 'score': 0.08}]
chr2	GH02I037396	37395164	37395439	0.47	[{'connected_gene': 'LOC101929542', 'score': 10.51}, {'connected_gene': 'PRKD3', 'score': 10.51}, {'connected_gene': 'RNU6-939P', 'score': 10.51}, {'connected_gene': 'CYP1B1', 'score': 10.02}, {'connected_gene': 'GC02P037427', 'score': 0.31}, {'connected_gene': 'QPCT', 'score': 0.23}]
chr2	GH02I037361	37361478	37361627	0.2	[{'connected_gene': 'LOC101929542', 'score': 11.98}, {'connected_gene': 'PRKD3', 'score': 11.98}, {'connected_gene': 'RNU6-939P', 'score': 11.56}, {'connected_gene': 'CEBPZ', 'score': 10.12}, {'connected_gene': 'NDUFAF7', 'score': 10.12}, {'connected_gene': 'QPCT', 'score': 0.37}, {'connected_gene': 'GC02P037427', 'score': 0.21}]
chr2	GH02I037351	37351158	37351307	0.86	[{'connected_gene': 'LOC101929542', 'score': 11.92}, {'connected_gene': 'PRKD3', 'score': 11.92}, {'connected_gene': 'CEBPZOS', 'score': 9.5}, {'connected_gene': 'NDUFAF7', 'score': 5.13}, {'connected_gene': 'QPCT', 'score': 0.44}, {'connected_gene': 'GC02P037427', 'score': 0.19}]
chr2	GH02I037317	37317700	37319187	1.07	[{'connected_gene': 'CEBPZOS', 'score': 16.84}, {'connected_gene': 'QPCT', 'score': 11.45}, {'connected_gene': 'PRKD3', 'score': 0.44}, {'connected_gene': 'GC02M037305', 'score': 0.44}]
chr2	GH02I037349	37349132	37350287	1.39	[{'connected_gene': 'CEBPZOS', 'score': 14.61}, {'connected_gene': 'PRKD3', 'score': 13.32}, {'connected_gene': 'LOC101929542', 'score': 11.94}, {'connected_gene': 'NDUFAF7', 'score': 5.13}, {'connected_gene': 'HEATR5B', 'score': 3.41}, {'connected_gene': 'STRN', 'score': 2.11}, {'connected_gene': 'QPCT', 'score': 2.07}, {'connected_gene': 'GC02P037427', 'score': 0.19}]
chr2	GH02I037330	37330910	37339199	0.6	[{'connected_gene': 'CEBPZOS', 'score': 17.75}, {'connected_gene': 'CEBPZ', 'score': 8.59}, {'connected_gene': 'PRKD3', 'score': 6.24}, {'connected_gene': 'NDUFAF7', 'score': 5.5}, {'connected_gene': 'GC02M037332', 'score': 0.77}, {'connected_gene': 'RNU6-939P', 'score': 0.77}, {'connected_gene': 'QPCT', 'score': 0.44}]