PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000357731	[[71861622, 71873253], [72058499, 72058651], [72076708, 72076829], [72163690, 72163822], [72241854, 72241980], [72400761, 72400994], [72748001, 72748417]]	[[71873128, 71873253], [72058499, 72058651], [72076708, 72076829], [72163690, 72163822], [72241854, 72241980], [72400761, 72400994], [72748001, 72748177]]
ENST00000306821	[[71868626, 71873253], [72058499, 72058651], [72076708, 72076829], [72163690, 72163822], [72241854, 72241980], [72400761, 72400994], [72566427, 72566613]]	[[71873128, 71873253], [72058499, 72058651], [72076708, 72076829], [72163690, 72163822], [72241854, 72241980], [72400761, 72400786]]
ENST00000434200	[[71873128, 71873253], [72058499, 72058651], [72076708, 72076829], [72241854, 72241980], [72400761, 72400994], [72748001, 72748171]]	[[71873128, 71873253], [72058499, 72058651], [72076708, 72076829], [72241854, 72241980], [72400761, 72400994], [72748001, 72748171]]
ENST00000467479	[[72163628, 72163822], [72241854, 72241980], [72400761, 72400994], [72566427, 72566600]]	None
ENST00000474357	[[71873174, 71873253], [71905408, 71905521]]	None
ENST00000478526	[[72163618, 72163822], [72168864, 72169088]]	None
NM_173808	[[71868624, 71873253], [72058499, 72058651], [72076708, 72076829], [72163690, 72163822], [72241854, 72241980], [72400761, 72400994], [72748001, 72748277]]	[[71873128, 71873253], [72058499, 72058651], [72076708, 72076829], [72163690, 72163822], [72241854, 72241980], [72400761, 72400994], [72748001, 72748177]]

Promoter

Chrom	Start	End	Description
chr1	72566627	72566642	CAGE_peak_10_at_NEGR1_5end
chr1	72748128	72748139	CAGE_peak_6_at_NEGR1_5end
chr1	72748140	72748229	CAGE_peak_1_at_NEGR1_5end
chr1	72748244	72748253	CAGE_peak_7_at_NEGR1_5end
chr1	72748492	72748510	CAGE_peak_5_at_NEGR1_5end
chr1	72748523	72748538	CAGE_peak_3_at_NEGR1_5end
chr1	72748551	72748570	CAGE_peak_4_at_NEGR1_5end
chr1	72748623	72748686	CAGE_peak_2_at_NEGR1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I072280	72280912	72287038	2.42	[{'connected_gene': 'NEGR1', 'score': 562.83}, {'connected_gene': 'LOC105378797', 'score': 550.77}, {'connected_gene': 'RPL31P12', 'score': 24.37}]
chr1	GH01I072220	72220803	72220938	0.22	[{'connected_gene': 'NEGR1', 'score': 1.62}, {'connected_gene': 'GC01P072172', 'score': 0.25}, {'connected_gene': 'GDI2P2', 'score': 0.23}]
chr1	GH01I072281	72280001	72280400	0.2	[{'connected_gene': 'RPL31P12', 'score': 7.78}, {'connected_gene': 'NEGR1', 'score': 0.77}, {'connected_gene': 'GDI2P2', 'score': 0.44}]
chr1	GH01I072121	72121880	72123108	0.31	[{'connected_gene': 'RPL31P12', 'score': 8.16}, {'connected_gene': 'GC01P072172', 'score': 0.23}, {'connected_gene': 'GC01M071959', 'score': 0.1}, {'connected_gene': 'NEGR1', 'score': 0.1}]
chr1	GH01I072034	72034562	72035411	0.38	[{'connected_gene': 'GC01M071959', 'score': 0.19}, {'connected_gene': 'GC01P072172', 'score': 0.12}, {'connected_gene': 'NEGR1', 'score': 0.07}]
chr1	GH01I071619	71619218	71619367	0.2	[{'connected_gene': 'ENSG00000231985', 'score': 10.92}, {'connected_gene': 'GC01M071606', 'score': 0.44}, {'connected_gene': 'GC01P071650', 'score': 0.29}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071785	71785011	71786043	0.2	[{'connected_gene': 'GC01M071789', 'score': 0.44}, {'connected_gene': 'ENSG00000271618', 'score': 0.25}, {'connected_gene': 'NEGR1', 'score': 0.04}]
chr1	GH01I071617	71617986	71619174	0.2	[{'connected_gene': 'ENSG00000231985', 'score': 10.92}, {'connected_gene': 'GC01M071606', 'score': 0.44}, {'connected_gene': 'GC01P071650', 'score': 0.29}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071649	71649407	71651081	0.2	[{'connected_gene': 'GC01P071650', 'score': 550.77}, {'connected_gene': 'GC01M071606', 'score': 0.28}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071642	71642491	71642558	0.22	[{'connected_gene': 'GC01P071650', 'score': 0.44}, {'connected_gene': 'GC01M071606', 'score': 0.31}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071690	71690173	71690505	0.22	[{'connected_gene': 'GC01P071650', 'score': 0.26}, {'connected_gene': 'ENSG00000271618', 'score': 0.25}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I072000	72000621	72001331	0.58	[{'connected_gene': 'GC01M071959', 'score': 0.28}, {'connected_gene': 'GC01P072172', 'score': 0.09}, {'connected_gene': 'NEGR1', 'score': 0.06}]
chr1	GH01I071640	71640198	71640347	0.2	[{'connected_gene': 'GC01P071650', 'score': 0.44}, {'connected_gene': 'GC01M071606', 'score': 0.31}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071732	71732498	71732647	0.2	[{'connected_gene': 'ENSG00000271618', 'score': 0.44}, {'connected_gene': 'GC01P071650', 'score': 0.18}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071621	71621798	71622320	0.31	[{'connected_gene': 'ENSG00000231985', 'score': 10.9}, {'connected_gene': 'GC01M071606', 'score': 0.44}, {'connected_gene': 'GC01P071650', 'score': 0.31}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071705	71705618	71706851	0.38	[{'connected_gene': 'ENSG00000271618', 'score': 0.29}, {'connected_gene': 'GC01P071650', 'score': 0.22}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071413	71413417	71414473	0.2	[{'connected_gene': 'GC01M071372', 'score': 0.26}, {'connected_gene': 'GC01P071485', 'score': 0.19}, {'connected_gene': 'ZRANB2-AS2', 'score': 0.06}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071462	71462418	71462547	0.38	[{'connected_gene': 'ENSG00000269933', 'score': 5.09}, {'connected_gene': 'GC01P071485', 'score': 0.34}, {'connected_gene': 'GC01M071415', 'score': 0.28}, {'connected_gene': 'GC01M071372', 'score': 0.17}, {'connected_gene': 'ZRANB2-AS2', 'score': 0.05}, {'connected_gene': 'NEGR1', 'score': 0.03}]
chr1	GH01I071407	71407131	71407386	0.4	[{'connected_gene': 'GC01M071372', 'score': 0.29}, {'connected_gene': 'GC01P071485', 'score': 0.18}, {'connected_gene': 'ZRANB2-AS2', 'score': 0.05}, {'connected_gene': 'NEGR1', 'score': 0.02}]
chr1	GH01I071868	71868439	71868607	0.22	[{'connected_gene': 'GC01M071897', 'score': 0.29}, {'connected_gene': 'NEGR1-IT1', 'score': 0.29}, {'connected_gene': 'NEGR1', 'score': 0.05}]
chr1	GH01I071881	71881477	71882899	0.38	[{'connected_gene': 'GC01M071897', 'score': 0.37}, {'connected_gene': 'NEGR1-IT1', 'score': 0.25}, {'connected_gene': 'NEGR1', 'score': 0.05}]