PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000503791	[[28712642, 28713224], [28748408, 28748530], [28750629, 28750696], [28752001, 28752072], [28771321, 28771483], [28794367, 28794515], [28830428, 28830676], [28834583, 28834688], [28835537, 28835595], [28840851, 28841013], [28841231, 28841348], [28841436, 28841538], [28844837, 28845003], [28846117, 28846450]]	None
ENST00000380958	[[28712642, 28713224], [28748408, 28748530], [28750629, 28750696], [28752001, 28752072], [28771321, 28771483], [28794367, 28794515], [28830428, 28830676], [28834583, 28834688], [28835537, 28835595], [28840851, 28841013], [28841231, 28841348], [28841436, 28841538], [28844837, 28845003], [28846117, 28846208], [28851373, 28851513], [28854548, 28854678], [28855451, 28855516], [28862120, 28862259], [28866518, 28866676]]	[[28712794, 28713224], [28748408, 28748530], [28750629, 28750696], [28752001, 28752072], [28771321, 28771483], [28794367, 28794515], [28830428, 28830676], [28834583, 28834688], [28835537, 28835595], [28840851, 28841013], [28841231, 28841348], [28841436, 28841538], [28844837, 28845003], [28846117, 28846208], [28851373, 28851513], [28854548, 28854678], [28855451, 28855516], [28862120, 28862259], [28866518, 28866659]]
ENST00000399613	[[28713169, 28713224], [28748408, 28748530], [28750629, 28750696], [28752001, 28752072], [28794367, 28794515], [28830428, 28830676], [28834583, 28834688], [28835537, 28835595], [28840851, 28841013], [28841231, 28841348], [28841436, 28841538], [28844837, 28845003], [28846117, 28846208], [28851373, 28851513], [28854548, 28854678], [28855451, 28855516], [28862120, 28862259], [28866518, 28869472]]	[[28748416, 28748530], [28750629, 28750696], [28752001, 28752072], [28794367, 28794515], [28830428, 28830676], [28834583, 28834688], [28835537, 28835595], [28840851, 28841013], [28841231, 28841348], [28841436, 28841538], [28844837, 28845003], [28846117, 28846208], [28851373, 28851513], [28854548, 28854678], [28855451, 28855516], [28862120, 28862259], [28866518, 28866659]]
ENST00000282391	[[28813769, 28813833], [28830428, 28830676], [28834583, 28834688], [28835537, 28835595], [28840851, 28841013], [28841231, 28841348], [28841436, 28841538], [28844837, 28845003], [28846117, 28846208], [28851373, 28851513], [28854548, 28854678], [28855451, 28855516], [28862120, 28862259], [28866518, 28869475]]	[[28813769, 28813833], [28830428, 28830676], [28834583, 28834688], [28835537, 28835595], [28840851, 28841013], [28841231, 28841348], [28841436, 28841538], [28844837, 28845003], [28846117, 28846208], [28851373, 28851513], [28854548, 28854678], [28855451, 28855516], [28862120, 28862259], [28866518, 28866659]]
ENST00000483842	[[28813693, 28814174], [28830428, 28830676]]	None
NM_175854	[[28712642, 28713224], [28748408, 28748530], [28750629, 28750696], [28752001, 28752072], [28771321, 28771483], [28794367, 28794515], [28830428, 28830676], [28834583, 28834688], [28835537, 28835595], [28840851, 28841013], [28841231, 28841348], [28841436, 28841538], [28844837, 28845003], [28846117, 28846208], [28851373, 28851513], [28854548, 28854678], [28855451, 28855516], [28862120, 28862259], [28866518, 28869475]]	[[28712794, 28713224], [28748408, 28748530], [28750629, 28750696], [28752001, 28752072], [28771321, 28771483], [28794367, 28794515], [28830428, 28830676], [28834583, 28834688], [28835537, 28835595], [28840851, 28841013], [28841231, 28841348], [28841436, 28841538], [28844837, 28845003], [28846117, 28846208], [28851373, 28851513], [28854548, 28854678], [28855451, 28855516], [28862120, 28862259], [28866518, 28866659]]

Promoter

Chrom	Start	End	Description
chr13	28712299	28712376	CAGE_peak_1_at_PAN3_5end
chr13	28712383	28712394	CAGE_peak_9_at_PAN3_5end
chr13	28712408	28712419	CAGE_peak_20_at_PAN3_5end
chr13	28712421	28712432	CAGE_peak_12_at_PAN3_5end
chr13	28712444	28712458	CAGE_peak_5_at_PAN3_5end
chr13	28712466	28712477	CAGE_peak_6_at_PAN3_5end
chr13	28712614	28712703	CAGE_peak_2_at_PAN3_5end
chr13	28712705	28712731	CAGE_peak_3_at_PAN3_5end
chr13	28712827	28712854	CAGE_peak_4_at_PAN3_5end
chr13	28813645	28813656	CAGE_peak_25_at_PAN3_5end
chr13	28867552	28867558	CAGE_peak_10_at_PAN3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I027137	27137376	27139195	0.93	[{'connected_gene': 'RPL21', 'score': 23.96}, {'connected_gene': 'SNORA27', 'score': 22.2}, {'connected_gene': 'USP12', 'score': 19.92}, {'connected_gene': 'USP12-AS2', 'score': 17.53}, {'connected_gene': 'PAN3', 'score': 13.68}, {'connected_gene': 'SNORD102', 'score': 10.88}, {'connected_gene': 'LINC00412', 'score': 10.32}, {'connected_gene': 'RASL11A', 'score': 9.97}, {'connected_gene': 'USP12-AS1', 'score': 0.39}]
chr13	GH13I027250	27250234	27254322	2.25	[{'connected_gene': 'RPL21', 'score': 550.77}, {'connected_gene': 'GC13M027245', 'score': 550.77}, {'connected_gene': 'LINC02340', 'score': 550.77}, {'connected_gene': 'USP12', 'score': 14.05}, {'connected_gene': 'WASF3', 'score': 13.82}, {'connected_gene': 'PAN3', 'score': 12.72}, {'connected_gene': 'SNORA27', 'score': 12.12}, {'connected_gene': 'MTIF3', 'score': 4.61}, {'connected_gene': 'PIR55933', 'score': 0.77}]
chr13	GH13I027617	27617884	27623193	2.27	[{'connected_gene': 'POLR1D', 'score': 581.68}, {'connected_gene': 'LNX2', 'score': 565.3}, {'connected_gene': 'PAN3', 'score': 25.31}, {'connected_gene': 'RNU6-63P', 'score': 0.12}]
chr13	GH13I027915	27915302	27916621	0.38	[{'connected_gene': 'PAN3', 'score': 5.16}, {'connected_gene': 'PDX1', 'score': 0.77}, {'connected_gene': 'PLUT', 'score': 0.44}, {'connected_gene': 'LOC105370130', 'score': 0.39}]
chr13	GH13I028126	28126152	28126176	0.22	[{'connected_gene': 'PAN3', 'score': 0.39}, {'connected_gene': 'CHCHD2P8', 'score': 0.37}]
chr13	GH13I028423	28422401	28423865	1.16	[{'connected_gene': 'PAN3', 'score': 1.73}, {'connected_gene': 'POMP', 'score': 1.67}, {'connected_gene': 'GC13M028385', 'score': 0.28}, {'connected_gene': 'FLT1', 'score': 0.19}]
chr13	GH13I027151	27151489	27152745	0.7	[{'connected_gene': 'PAN3', 'score': 11.15}, {'connected_gene': 'RASL11A', 'score': 5.12}, {'connected_gene': 'USP12', 'score': 0.37}, {'connected_gene': 'USP12-AS1', 'score': 0.31}]
chr13	GH13I028301	28301317	28302553	0.31	[{'connected_gene': 'PAN3', 'score': 4.29}, {'connected_gene': 'GC13M028298', 'score': 0.77}, {'connected_gene': 'GC13P028308', 'score': 0.44}, {'connected_gene': 'FLT1', 'score': 0.08}]
chr13	GH13I028258	28258544	28258693	0.38	[{'connected_gene': 'PAN3', 'score': 11.58}, {'connected_gene': 'RNU6-82P', 'score': 11.54}, {'connected_gene': 'GC13P028239', 'score': 0.37}, {'connected_gene': 'GC13M028296', 'score': 0.28}]
chr13	GH13I028015	28015929	28016227	0.24	[{'connected_gene': 'PAN3', 'score': 11.26}, {'connected_gene': 'PLUT', 'score': 10.47}, {'connected_gene': 'PDX1', 'score': 10.47}, {'connected_gene': 'FLT3', 'score': 2.32}, {'connected_gene': 'PIR32072', 'score': 0.34}, {'connected_gene': 'KATNBL1P1', 'score': 0.23}]
chr13	GH13I028530	28530786	28533746	1.44	[{'connected_gene': 'PAN3', 'score': 36.64}, {'connected_gene': 'PAN3-AS1', 'score': 29.09}, {'connected_gene': 'FLT1', 'score': 12.65}, {'connected_gene': 'POMP', 'score': 10.44}, {'connected_gene': 'POLR1D', 'score': 10.26}, {'connected_gene': 'EEF1A1P3', 'score': 10.23}, {'connected_gene': 'ENSG00000279393', 'score': 0.28}, {'connected_gene': 'LOC105370135', 'score': 0.26}]
chr13	GH13I028136	28136859	28142939	2.24	[{'connected_gene': 'PAN3', 'score': 567.12}, {'connected_gene': 'PAN3-AS1', 'score': 559.17}, {'connected_gene': 'RNU6-82P', 'score': 11.85}, {'connected_gene': 'SNORA27', 'score': 10.86}, {'connected_gene': 'POLR1D', 'score': 10.75}, {'connected_gene': 'EEF1A1P3', 'score': 9.82}]
chr13	GH13I028160	28160818	28162600	1.07	[{'connected_gene': 'PAN3', 'score': 18.32}, {'connected_gene': 'PAN3-AS1', 'score': 5.96}, {'connected_gene': 'EEF1A1P3', 'score': 0.23}]
chr13	GH13I028251	28251401	28252000	0.38	[{'connected_gene': 'PAN3', 'score': 16.49}, {'connected_gene': 'GC13P028239', 'score': 0.39}, {'connected_gene': 'GC13M028296', 'score': 0.26}]
chr13	GH13I028268	28268285	28269938	0.8	[{'connected_gene': 'PAN3', 'score': 17.97}, {'connected_gene': 'GC13M028296', 'score': 0.31}, {'connected_gene': 'GC13P028239', 'score': 0.31}]
chr13	GH13I028037	28037529	28037671	0.5	[{'connected_gene': 'FLT3', 'score': 20.39}, {'connected_gene': 'PAN3', 'score': 1.27}, {'connected_gene': 'KATNBL1P1', 'score': 0.31}, {'connected_gene': 'PIR32072', 'score': 0.26}]
chr13	GH13I028031	28031245	28032277	0.91	[{'connected_gene': 'FLT3', 'score': 30.44}, {'connected_gene': 'PAN3', 'score': 11.37}, {'connected_gene': 'PIR32072', 'score': 0.28}, {'connected_gene': 'KATNBL1P1', 'score': 0.28}]
chr13	GH13I028041	28041535	28041804	0.47	[{'connected_gene': 'FLT3', 'score': 5.79}, {'connected_gene': 'PAN3', 'score': 1.64}, {'connected_gene': 'KATNBL1P1', 'score': 0.31}, {'connected_gene': 'PIR32072', 'score': 0.25}]
chr13	GH13I028523	28523891	28524285	0.98	[{'connected_gene': 'FLT1', 'score': 12.56}, {'connected_gene': 'POMP', 'score': 10.6}, {'connected_gene': 'PAN3', 'score': 1.17}, {'connected_gene': 'ENSG00000279393', 'score': 0.31}, {'connected_gene': 'LOC105370135', 'score': 0.23}]
chr13	GH13I028391	28391573	28395309	1.15	[{'connected_gene': 'FLT1', 'score': 11.45}, {'connected_gene': 'POMP', 'score': 10.93}, {'connected_gene': 'PAN3', 'score': 1.4}, {'connected_gene': 'GC13M028385', 'score': 0.44}]
chr13	GH13I028471	28471509	28471719	0.29	[{'connected_gene': 'FLT1', 'score': 11.83}, {'connected_gene': 'PAN3', 'score': 1.25}, {'connected_gene': 'GC13M028385', 'score': 0.18}]
chr13	GH13I028467	28467972	28469000	1.18	[{'connected_gene': 'FLT1', 'score': 12.01}, {'connected_gene': 'PAN3', 'score': 1.14}, {'connected_gene': 'GC13M028385', 'score': 0.18}]
chr13	GH13I028573	28573676	28575873	1.48	[{'connected_gene': 'LOC105370135', 'score': 550.77}, {'connected_gene': 'POMP', 'score': 13.52}, {'connected_gene': 'FLT1', 'score': 11.84}, {'connected_gene': 'PAN3', 'score': 4.51}, {'connected_gene': 'ENSG00000279393', 'score': 0.18}]
chr13	GH13I028181	28181564	28181713	0.38	[{'connected_gene': 'EEF1A1P3', 'score': 0.29}, {'connected_gene': 'PAN3', 'score': 0.26}, {'connected_gene': 'PAN3-AS1', 'score': 0.26}]
chr13	GH13I028151	28151176	28151545	0.24	[{'connected_gene': 'PAN3-AS1', 'score': 5.62}, {'connected_gene': 'PAN3', 'score': 2.5}, {'connected_gene': 'EEF1A1P3', 'score': 0.21}]
chr13	GH13I028294	28294315	28294517	0.4	[{'connected_gene': 'GC13M028296', 'score': 550.77}, {'connected_gene': 'POMP', 'score': 10.12}, {'connected_gene': 'GC13P028239', 'score': 0.23}, {'connected_gene': 'PAN3', 'score': 0.1}]
chr13	GH13I028237	28237804	28238352	0.2	[{'connected_gene': 'GC13P028239', 'score': 550.77}, {'connected_gene': 'RNU6-82P', 'score': 0.44}, {'connected_gene': 'PAN3', 'score': 0.15}]