PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr1	210111376	210111390	CAGE_peak_5_at_SYT14_5end
chr1	210111408	210111424	CAGE_peak_4_at_SYT14_5end
chr1	210111534	210111541	CAGE_peak_6_at_SYT14_5end
chr1	210111553	210111569	CAGE_peak_2_at_SYT14_5end
chr1	210111570	210111603	CAGE_peak_1_at_SYT14_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I209774	209774105	209776233	0.56	[{'connected_gene': 'TRAF3IP3', 'score': 10.27}, {'connected_gene': 'HSD11B1', 'score': 9.74}, {'connected_gene': 'SYT14', 'score': 7.08}, {'connected_gene': 'C1orf74', 'score': 0.44}, {'connected_gene': 'LOC101930114', 'score': 0.37}]
chr1	GH01I210213	210213192	210213475	0.44	[{'connected_gene': 'SERTAD4-AS1', 'score': 11.51}, {'connected_gene': 'TRAF3IP3', 'score': 5.61}, {'connected_gene': 'SERTAD4', 'score': 0.37}, {'connected_gene': 'SYT14', 'score': 0.06}]
chr1	GH01I210392	210392938	210395470	1.28	[{'connected_gene': 'SERTAD4-AS1', 'score': 5.3}, {'connected_gene': 'SERTAD4', 'score': 4.8}, {'connected_gene': 'HHAT', 'score': 4.66}, {'connected_gene': 'SYT14', 'score': 1.76}, {'connected_gene': 'RNU5A-8P', 'score': 0.37}, {'connected_gene': 'GC01M210375', 'score': 0.37}, {'connected_gene': 'LOC100421537', 'score': 0.2}]
chr1	GH01I210222	210222396	210223663	0.66	[{'connected_gene': 'SERTAD4-AS1', 'score': 9.05}, {'connected_gene': 'SERTAD4', 'score': 0.44}, {'connected_gene': 'SYT14', 'score': 0.06}]
chr1	GH01I209800	209800845	209810995	2.63	[{'connected_gene': 'IRF6', 'score': 578.59}, {'connected_gene': 'TRAF3IP3', 'score': 14.53}, {'connected_gene': 'DIEXF', 'score': 10.67}, {'connected_gene': 'SYT14', 'score': 7.44}, {'connected_gene': 'LAMB3', 'score': 1.81}, {'connected_gene': 'C1orf74', 'score': 0.34}]
chr1	GH01I209789	209789432	209793310	0.79	[{'connected_gene': 'IRF6', 'score': 24.32}, {'connected_gene': 'TRAF3IP3', 'score': 13.42}, {'connected_gene': 'DIEXF', 'score': 9.99}, {'connected_gene': 'SYT14', 'score': 6.04}, {'connected_gene': 'C1orf74', 'score': 0.44}]
chr1	GH01I209795	209795340	209798626	0.82	[{'connected_gene': 'IRF6', 'score': 25.19}, {'connected_gene': 'DIEXF', 'score': 11.02}, {'connected_gene': 'TRAF3IP3', 'score': 10.1}, {'connected_gene': 'SYT14', 'score': 6.03}, {'connected_gene': 'C1orf74', 'score': 0.39}]
chr1	GH01I209829	209829059	209832767	0.49	[{'connected_gene': 'IRF6', 'score': 21.3}, {'connected_gene': 'DIEXF', 'score': 14.59}, {'connected_gene': 'SYT14', 'score': 11.2}, {'connected_gene': 'C1orf74', 'score': 10.75}, {'connected_gene': 'TRAF3IP3', 'score': 9.7}, {'connected_gene': 'GC01M209934', 'score': 0.14}]
chr1	GH01I209834	209834901	209837225	0.52	[{'connected_gene': 'IRF6', 'score': 21.25}, {'connected_gene': 'DIEXF', 'score': 14.04}, {'connected_gene': 'SYT14', 'score': 11.0}, {'connected_gene': 'GC01M209934', 'score': 0.15}]
chr1	GH01I209844	209844680	209847089	0.52	[{'connected_gene': 'IRF6', 'score': 20.8}, {'connected_gene': 'SYT14', 'score': 11.52}, {'connected_gene': 'TRAF3IP3', 'score': 8.39}, {'connected_gene': 'DIEXF', 'score': 0.37}, {'connected_gene': 'GC01M209934', 'score': 0.16}]
chr1	GH01I209838	209838094	209842183	1.16	[{'connected_gene': 'IRF6', 'score': 20.64}, {'connected_gene': 'SYT14', 'score': 14.59}, {'connected_gene': 'TRAF3IP3', 'score': 8.32}, {'connected_gene': 'DIEXF', 'score': 0.39}, {'connected_gene': 'GC01M209934', 'score': 0.15}]
chr1	GH01I209853	209853219	209857384	0.43	[{'connected_gene': 'IRF6', 'score': 20.35}, {'connected_gene': 'SYT14', 'score': 16.97}, {'connected_gene': 'TRAF3IP3', 'score': 11.7}, {'connected_gene': 'DIEXF', 'score': 11.22}, {'connected_gene': 'GC01M209934', 'score': 0.18}]
chr1	GH01I209814	209814153	209818041	1.48	[{'connected_gene': 'IRF6', 'score': 17.61}, {'connected_gene': 'C1orf74', 'score': 11.48}, {'connected_gene': 'LOC101930114', 'score': 10.41}, {'connected_gene': 'SYT14', 'score': 7.54}, {'connected_gene': 'LAMB3', 'score': 2.92}, {'connected_gene': 'DIEXF', 'score': 0.39}]
chr1	GH01I209822	209822523	209829001	2.48	[{'connected_gene': 'DIEXF', 'score': 566.01}, {'connected_gene': 'IRF6', 'score': 21.07}, {'connected_gene': 'SYT14', 'score': 14.57}, {'connected_gene': 'C1orf74', 'score': 11.45}, {'connected_gene': 'LOC101930114', 'score': 10.39}, {'connected_gene': 'TRAF3IP3', 'score': 10.25}]
chr1	GH01I209869	209869371	209876305	1.1	[{'connected_gene': 'SYT14', 'score': 35.08}, {'connected_gene': 'TRAF3IP3', 'score': 12.85}, {'connected_gene': 'IRF6', 'score': 9.49}, {'connected_gene': 'DIEXF', 'score': 0.26}, {'connected_gene': 'GC01M209934', 'score': 0.2}]
chr1	GH01I209879	209879331	209880554	0.84	[{'connected_gene': 'SYT14', 'score': 34.33}, {'connected_gene': 'TRAF3IP3', 'score': 10.0}, {'connected_gene': 'DIEXF', 'score': 0.23}, {'connected_gene': 'GC01M209934', 'score': 0.22}]
chr1	GH01I209876	209876597	209877921	0.57	[{'connected_gene': 'SYT14', 'score': 32.8}, {'connected_gene': 'TRAF3IP3', 'score': 9.37}, {'connected_gene': 'DIEXF', 'score': 0.25}, {'connected_gene': 'GC01M209934', 'score': 0.21}]
chr1	GH01I210012	210012694	210013000	0.22	[{'connected_gene': 'SYT14', 'score': 1.34}, {'connected_gene': 'SERTAD4', 'score': 0.08}]
chr1	GH01I209863	209863203	209865056	0.54	[{'connected_gene': 'SYT14', 'score': 15.76}, {'connected_gene': 'IRF6', 'score': 11.27}, {'connected_gene': 'DIEXF', 'score': 11.05}, {'connected_gene': 'GC01M209934', 'score': 0.19}]
chr1	GH01I209899	209899657	209902636	0.74	[{'connected_gene': 'SYT14', 'score': 11.3}, {'connected_gene': 'IRF6', 'score': 7.18}, {'connected_gene': 'GC01M209934', 'score': 0.28}, {'connected_gene': 'DIEXF', 'score': 0.19}]
chr1	GH01I209882	209882085	209886500	1.66	[{'connected_gene': 'SYT14', 'score': 34.45}, {'connected_gene': 'DIEXF', 'score': 12.26}, {'connected_gene': 'IRF6', 'score': 6.69}, {'connected_gene': 'TRAF3IP3', 'score': 4.47}, {'connected_gene': 'LAMB3', 'score': 2.3}, {'connected_gene': 'GC01M209934', 'score': 0.23}]
chr1	GH01I209889	209889987	209893008	0.66	[{'connected_gene': 'SYT14', 'score': 22.18}, {'connected_gene': 'GC01M209934', 'score': 0.25}, {'connected_gene': 'DIEXF', 'score': 0.21}]
chr1	GH01I209893	209893371	209897587	0.69	[{'connected_gene': 'SYT14', 'score': 22.35}, {'connected_gene': 'DIEXF', 'score': 5.95}, {'connected_gene': 'GC01M209934', 'score': 0.26}]
chr1	GH01I209937	209937350	209938998	1.84	[{'connected_gene': 'SYT14', 'score': 550.77}, {'connected_gene': 'GC01M209934', 'score': 550.77}]
chr1	GH01I210301	210301271	210303031	0.51	[{'connected_gene': 'RNASEH1P3', 'score': 550.77}, {'connected_gene': 'ENSG00000233455', 'score': 550.77}, {'connected_gene': 'TRAF3IP3', 'score': 8.05}, {'connected_gene': 'SERTAD4-AS1', 'score': 5.64}, {'connected_gene': 'SYT14', 'score': 5.06}, {'connected_gene': 'GC01P210292', 'score': 0.44}]
chr1	GH01I209782	209782645	209788649	2.27	[{'connected_gene': 'C1orf74', 'score': 550.77}, {'connected_gene': 'TRAF3IP3', 'score': 24.87}, {'connected_gene': 'IRF6', 'score': 20.7}, {'connected_gene': 'SYT14', 'score': 6.24}]
chr1	GH01I210290	210290956	210296198	1.48	[{'connected_gene': 'GC01P210292', 'score': 550.77}, {'connected_gene': 'SERTAD4-AS1', 'score': 10.13}, {'connected_gene': 'TRAF3IP3', 'score': 8.51}, {'connected_gene': 'SYT14', 'score': 5.41}, {'connected_gene': 'HHAT', 'score': 1.91}, {'connected_gene': 'RNASEH1P3', 'score': 0.39}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000534859	[[210111537, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332744, 210332822], [210334073, 210337631]]	[[210111609, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332744, 210332822], [210334073, 210334387]]
ENST00000399639	[[210111537, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210330223, 210330225], [210332765, 210332822], [210334073, 210337631]]	[[210111609, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210330223, 210330225], [210332765, 210332786]]
ENST00000422431	[[210111537, 210111622], [210126053, 210126101], [210139237, 210139358], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332765, 210332822], [210334073, 210337631]]	[[210111595, 210111622], [210126053, 210126101], [210139237, 210139358], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332765, 210332822], [210334073, 210334387]]
ENST00000537238	[[210111537, 210111622], [210126053, 210126101], [210126399, 210126604], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210337631]]	[[210187030, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210334387]]
ENST00000367019	[[210111575, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332765, 210332822], [210334073, 210335568]]	[[210111609, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332765, 210332822], [210334073, 210334387]]
ENST00000472886	[[210111595, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210335671]]	[[210111609, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210334387]]
ENST00000271745	[[210126053, 210126101], [210126399, 210126604], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273535], [210329065, 210329255], [210334073, 210337636]]	None
ENST00000367015	[[210126053, 210126101], [210126399, 210126604], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210337636]]	[[210187030, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210334387]]
ENST00000469604	[[210194390, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332744, 210332822], [210334073, 210336312]]	None
NM_153262	[[210111518, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210337636]]	[[210111609, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210334387]]
NM_001146262	[[210111518, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332765, 210332822], [210334073, 210337636]]	[[210111609, 210111622], [210126053, 210126101], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332765, 210332822], [210334073, 210334387]]
NM_001146264	[[210111518, 210111622], [210126053, 210126101], [210139237, 210139358], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210337636]]	[[210111595, 210111622], [210126053, 210126101], [210139237, 210139358], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210334387]]
NM_001146261	[[210111518, 210111622], [210126053, 210126101], [210139237, 210139358], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332765, 210332822], [210334073, 210337636]]	[[210111595, 210111622], [210126053, 210126101], [210139237, 210139358], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210332765, 210332822], [210334073, 210334387]]
NR_027459	[[210111518, 210111622], [210126053, 210126101], [210126399, 210126604], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273535], [210329065, 210329255], [210334073, 210337636]]	None
NM_001256006	[[210111518, 210111622], [210126053, 210126101], [210126399, 210126604], [210186977, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210337636]]	[[210187030, 210187142], [210194383, 210194599], [210267666, 210267938], [210273356, 210273806], [210329065, 210329255], [210334073, 210334387]]