PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000308963	[[66742747, 66743109], [66743650, 66744475]]	[[66742833, 66743109], [66743650, 66743722]]
NM_001136485	[[66742753, 66743109], [66743650, 66744479]]	[[66742833, 66743109], [66743650, 66743722]]

Promoter

Chrom	Start	End	Description
chr11	66742742	66742753	CAGE_peak_3_at_C11orf86_5end
chr11	66742766	66742787	CAGE_peak_1_at_C11orf86_5end
chr11	66742795	66742818	CAGE_peak_2_at_C11orf86_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I067006	67006150	67007209	1.04	[{'connected_gene': 'SYT12', 'score': 550.77}, {'connected_gene': 'LOC105369352', 'score': 15.17}, {'connected_gene': 'ENSG00000258297', 'score': 15.0}, {'connected_gene': 'RBM14', 'score': 13.26}, {'connected_gene': 'ENSG00000254461', 'score': 11.37}, {'connected_gene': 'RBM4', 'score': 9.98}, {'connected_gene': 'MRPL11', 'score': 9.94}, {'connected_gene': 'C11orf86', 'score': 0.29}]
chr11	GH11I066962	66962053	66964143	0.49	[{'connected_gene': 'ACTN3', 'score': 7.84}, {'connected_gene': 'LOC101928069', 'score': 4.06}, {'connected_gene': 'PC', 'score': 0.77}, {'connected_gene': 'LOC105369355', 'score': 0.44}, {'connected_gene': 'C11orf86', 'score': 0.39}]
chr11	GH11I066903	66903850	66909415	1.82	[{'connected_gene': 'PC', 'score': 575.34}, {'connected_gene': 'GC11M066908', 'score': 550.77}, {'connected_gene': 'GC11M066909', 'score': 550.77}, {'connected_gene': 'C11orf80', 'score': 18.89}, {'connected_gene': 'RHOD', 'score': 18.42}, {'connected_gene': 'ACTN3', 'score': 16.0}, {'connected_gene': 'CTSF', 'score': 13.46}, {'connected_gene': 'RIN1', 'score': 12.58}, {'connected_gene': 'C11orf86', 'score': 10.91}, {'connected_gene': 'LRFN4', 'score': 10.85}, {'connected_gene': 'SYT12', 'score': 10.73}, {'connected_gene': 'LOC100505504', 'score': 9.63}]
chr11	GH11I066986	66986290	66986420	0.38	[{'connected_gene': 'PC', 'score': 11.22}, {'connected_gene': 'C11orf86', 'score': 0.39}, {'connected_gene': 'SYT12', 'score': 0.34}]
chr11	GH11I066964	66964211	66965649	0.43	[{'connected_gene': 'PC', 'score': 0.44}, {'connected_gene': 'LOC105369355', 'score': 0.39}, {'connected_gene': 'C11orf86', 'score': 0.39}]
chr11	GH11I067001	67001993	67003268	0.69	[{'connected_gene': 'RHOD', 'score': 11.05}, {'connected_gene': 'SYT12', 'score': 0.77}, {'connected_gene': 'C11orf86', 'score': 0.31}]
chr11	GH11I066981	66981589	66982779	1.25	[{'connected_gene': 'C11orf86', 'score': 0.44}, {'connected_gene': 'SYT12', 'score': 0.34}]
chr11	GH11I066984	66984001	66984400	1.08	[{'connected_gene': 'C11orf86', 'score': 0.44}, {'connected_gene': 'SYT12', 'score': 0.34}]
chr11	GH11I066973	66973492	66976565	1.69	[{'connected_gene': 'C11orf86', 'score': 550.77}, {'connected_gene': 'LOC105369352', 'score': 13.75}, {'connected_gene': 'EIF1AD', 'score': 11.55}, {'connected_gene': 'RBM14', 'score': 11.3}, {'connected_gene': 'MRPL11', 'score': 10.66}, {'connected_gene': 'ENSG00000258297', 'score': 10.66}, {'connected_gene': 'DPP3', 'score': 4.69}, {'connected_gene': 'SPTBN2', 'score': 4.37}, {'connected_gene': 'PC', 'score': 0.37}]
chr11	GH11I066965	66965661	66972443	1.69	[{'connected_gene': 'CLCF1', 'score': 17.27}, {'connected_gene': 'RAD9A', 'score': 14.17}, {'connected_gene': 'PC', 'score': 13.58}, {'connected_gene': 'RNU7-23P', 'score': 10.92}, {'connected_gene': 'CTSF', 'score': 6.72}, {'connected_gene': 'SPTBN2', 'score': 5.82}, {'connected_gene': 'GRK2', 'score': 2.58}, {'connected_gene': 'KDM2A', 'score': 1.66}, {'connected_gene': 'POLD4', 'score': 1.33}, {'connected_gene': 'C11orf86', 'score': 0.44}, {'connected_gene': 'LOC105369355', 'score': 0.39}]
chr11	GH11I066987	66987210	66987937	0.77	[{'connected_gene': 'LOC105369352', 'score': 13.75}, {'connected_gene': 'EIF1AD', 'score': 11.55}, {'connected_gene': 'RBM14', 'score': 11.3}, {'connected_gene': 'PC', 'score': 11.22}, {'connected_gene': 'MRPL11', 'score': 10.66}, {'connected_gene': 'ENSG00000258297', 'score': 10.65}, {'connected_gene': 'ALDH3B2', 'score': 6.14}, {'connected_gene': 'C11orf86', 'score': 0.39}, {'connected_gene': 'SYT12', 'score': 0.37}]
chr11	GH11I066996	66996538	66998030	0.92	[{'connected_gene': 'RBM14', 'score': 91.42}, {'connected_gene': 'LOC105369352', 'score': 76.58}, {'connected_gene': 'ENSG00000254461', 'score': 68.72}, {'connected_gene': 'ENSG00000258297', 'score': 68.16}, {'connected_gene': 'RBM4', 'score': 53.79}, {'connected_gene': 'ENSG00000255038', 'score': 50.66}, {'connected_gene': 'SF3B2', 'score': 47.33}, {'connected_gene': 'RAD9A', 'score': 42.41}, {'connected_gene': 'RCE1', 'score': 41.91}, {'connected_gene': 'ENSG00000245156', 'score': 41.79}, {'connected_gene': 'EIF1AD', 'score': 41.59}, {'connected_gene': 'KDM2A', 'score': 39.91}, {'connected_gene': 'ENSG00000255320', 'score': 22.52}, {'connected_gene': 'RPS6KB2', 'score': 20.74}, {'connected_gene': 'KLC2', 'score': 19.48}, {'connected_gene': 'MRPL11', 'score': 18.34}, {'connected_gene': 'B4GAT1', 'score': 12.64}, {'connected_gene': 'CORO1B', 'score': 12.5}, {'connected_gene': 'FAM86C2P', 'score': 12.4}, {'connected_gene': 'BBS1', 'score': 11.64}, {'connected_gene': 'CCS', 'score': 11.53}, {'connected_gene': 'RAB1B', 'score': 11.38}, {'connected_gene': 'RHOD', 'score': 11.01}, {'connected_gene': 'SSH3', 'score': 10.25}, {'connected_gene': 'CLCF1', 'score': 10.01}, {'connected_gene': 'PELI3', 'score': 9.97}, {'connected_gene': 'BRMS1', 'score': 9.83}, {'connected_gene': 'LOC101928069', 'score': 9.75}, {'connected_gene': 'SYT12', 'score': 0.44}, {'connected_gene': 'C11orf86', 'score': 0.34}]
chr11	GH11I066974	66973169	66973187	0.51	[{'connected_gene': 'RNU7-23P', 'score': 10.91}, {'connected_gene': 'C11orf86', 'score': 0.77}, {'connected_gene': 'PC', 'score': 0.39}]