PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000458379	[[5842898, 5844862], [5851400, 5851460]]	[[5843764, 5844850]]
ENST00000589918	[[5842901, 5844862], [5846436, 5846575], [5851400, 5851482]]	[[5843764, 5844850]]
ENST00000303225	[[5842901, 5844862], [5846436, 5846977], [5851400, 5851482]]	[[5843764, 5844850]]
ENST00000589620	[[5842901, 5844862], [5846436, 5846629], [5851400, 5851485]]	[[5843764, 5844850]]
ENST00000589714	[[5844529, 5844862], [5846436, 5846610], [5851400, 5851460]]	[[5844529, 5844850]]
ENST00000587048	[[5844550, 5844862], [5846436, 5846629], [5848844, 5848916]]	[[5844550, 5844850]]
ENST00000585715	[[5844717, 5844862], [5846436, 5847045]]	[[5844717, 5844850]]
ENST00000587183	[[5844836, 5844862], [5846436, 5846977], [5848750, 5848782]]	[[5844836, 5844850]]
ENST00000593144	[[5846575, 5846977], [5847593, 5847705], [5848844, 5848912]]	None
ENST00000588539	[[5846817, 5846977], [5847593, 5847719], [5849488, 5849556], [5850177, 5850330]]	None
NM_000149	[[5842898, 5844862], [5846436, 5846977], [5851400, 5851485]]	[[5843764, 5844850]]
NM_001097639	[[5842898, 5844862], [5846436, 5846629], [5851400, 5851485]]	[[5843764, 5844850]]
NM_001097640	[[5842898, 5844862], [5846436, 5846575], [5851400, 5851485]]	[[5843764, 5844850]]
NM_001097641	[[5842898, 5844862], [5851400, 5851485]]	[[5843764, 5844850]]

Promoter

Chrom	Start	End	Description
chr19	5846526	5846542	CAGE_peak_3_at_FUT3_5end
chr19	5846552	5846559	CAGE_peak_6_at_FUT3_5end
chr19	5846627	5846646	CAGE_peak_4_at_FUT3_5end
chr19	5846676	5846682	CAGE_peak_7_at_FUT3_5end
chr19	5851442	5851487	CAGE_peak_1_at_FUT3_5end
chr19	5851531	5851546	CAGE_peak_2_at_FUT3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I005802	5802310	5802499	0.71	[{'connected_gene': 'LONP1', 'score': 11.84}, {'connected_gene': 'CATSPERD', 'score': 11.84}, {'connected_gene': 'FUT6', 'score': 11.79}, {'connected_gene': 'FUT3', 'score': 11.76}, {'connected_gene': 'FUT5', 'score': 11.54}, {'connected_gene': 'NDUFA11', 'score': 11.49}, {'connected_gene': 'VMAC', 'score': 11.49}, {'connected_gene': 'NRTN', 'score': 0.77}, {'connected_gene': 'DUS3L', 'score': 0.39}]
chr19	GH19I005932	5932324	5937448	0.88	[{'connected_gene': 'CAPS', 'score': 20.18}, {'connected_gene': 'RANBP3', 'score': 12.2}, {'connected_gene': 'NDUFA11', 'score': 12.2}, {'connected_gene': 'VMAC', 'score': 12.2}, {'connected_gene': 'FUT5', 'score': 12.12}, {'connected_gene': 'FUT3', 'score': 11.1}, {'connected_gene': 'FUT6', 'score': 11.08}, {'connected_gene': 'ENSG00000267571', 'score': 0.34}, {'connected_gene': 'GC19P005968', 'score': 0.29}]
chr19	GH19I005928	5928857	5930499	0.43	[{'connected_gene': 'CAPS', 'score': 15.16}, {'connected_gene': 'VMAC', 'score': 12.49}, {'connected_gene': 'NDUFA11', 'score': 12.47}, {'connected_gene': 'FUT5', 'score': 12.38}, {'connected_gene': 'FUT3', 'score': 11.14}, {'connected_gene': 'FUT6', 'score': 11.13}, {'connected_gene': 'ENSG00000267571', 'score': 0.37}, {'connected_gene': 'GC19P005968', 'score': 0.28}, {'connected_gene': 'RANBP3', 'score': 0.25}]
chr19	GH19I005913	5913665	5916971	1.55	[{'connected_gene': 'CAPS', 'score': 569.79}, {'connected_gene': 'ENSG00000267571', 'score': 550.77}, {'connected_gene': 'FUT3', 'score': 11.1}, {'connected_gene': 'FUT6', 'score': 11.07}, {'connected_gene': 'CATSPERD', 'score': 10.55}, {'connected_gene': 'ENSG00000267314', 'score': 0.39}, {'connected_gene': 'GC19P005968', 'score': 0.23}, {'connected_gene': 'RANBP3', 'score': 0.21}]
chr19	GH19I005925	5925732	5928381	0.77	[{'connected_gene': 'CAPS', 'score': 17.74}, {'connected_gene': 'NDUFA11', 'score': 12.49}, {'connected_gene': 'VMAC', 'score': 12.49}, {'connected_gene': 'FUT5', 'score': 12.38}, {'connected_gene': 'FUT3', 'score': 11.14}, {'connected_gene': 'FUT6', 'score': 11.13}, {'connected_gene': 'ENSG00000267571', 'score': 0.39}, {'connected_gene': 'GC19P005968', 'score': 0.26}, {'connected_gene': 'RANBP3', 'score': 0.23}]
chr19	GH19I005798	5798947	5799863	1.17	[{'connected_gene': 'DUS3L', 'score': 47.97}, {'connected_gene': 'LONP1', 'score': 11.84}, {'connected_gene': 'CATSPERD', 'score': 11.84}, {'connected_gene': 'FUT6', 'score': 11.77}, {'connected_gene': 'FUT3', 'score': 11.74}, {'connected_gene': 'FUT5', 'score': 11.53}, {'connected_gene': 'NDUFA11', 'score': 11.49}, {'connected_gene': 'VMAC', 'score': 11.48}, {'connected_gene': 'NRTN', 'score': 6.06}]
chr19	GH19I005794	5794190	5794419	0.74	[{'connected_gene': 'DUS3L', 'score': 60.49}, {'connected_gene': 'LONP1', 'score': 11.85}, {'connected_gene': 'CATSPERD', 'score': 11.85}, {'connected_gene': 'FUT6', 'score': 11.76}, {'connected_gene': 'FUT3', 'score': 11.73}, {'connected_gene': 'FUT5', 'score': 11.52}, {'connected_gene': 'NDUFA11', 'score': 11.48}, {'connected_gene': 'VMAC', 'score': 11.47}, {'connected_gene': 'NRTN', 'score': 0.39}]
chr19	GH19I005803	5803601	5807021	1.47	[{'connected_gene': 'NRTN', 'score': 555.71}, {'connected_gene': 'DUS3L', 'score': 40.98}, {'connected_gene': 'SAFB2', 'score': 19.64}, {'connected_gene': 'KHSRP', 'score': 13.21}, {'connected_gene': 'GTF2F1', 'score': 12.94}, {'connected_gene': 'FUT6', 'score': 11.78}, {'connected_gene': 'FUT3', 'score': 11.74}, {'connected_gene': 'FUT5', 'score': 11.3}, {'connected_gene': 'NDUFA11', 'score': 11.25}, {'connected_gene': 'VMAC', 'score': 11.25}, {'connected_gene': 'RANBP3', 'score': 10.42}]
chr19	GH19I005843	5843334	5843854	0.43	[{'connected_gene': 'NRTN', 'score': 9.68}, {'connected_gene': 'FUT6', 'score': 0.77}, {'connected_gene': 'LOC101928844', 'score': 0.77}, {'connected_gene': 'FUT3', 'score': 0.44}]
chr19	GH19I005956	5956312	5970192	1.66	[{'connected_gene': 'VMAC', 'score': 40.44}, {'connected_gene': 'ENSG00000267571', 'score': 31.63}, {'connected_gene': 'CAPS', 'score': 27.08}, {'connected_gene': 'DUS3L', 'score': 24.32}, {'connected_gene': 'NDUFA11', 'score': 23.82}, {'connected_gene': 'GPR108', 'score': 23.2}, {'connected_gene': 'FUT5', 'score': 19.53}, {'connected_gene': 'ACSBG2', 'score': 19.42}, {'connected_gene': 'SAFB', 'score': 12.1}, {'connected_gene': 'KDM4B', 'score': 11.53}, {'connected_gene': 'FUT3', 'score': 11.49}, {'connected_gene': 'FUT6', 'score': 11.49}, {'connected_gene': 'KHSRP', 'score': 10.63}, {'connected_gene': 'SNRPEP4', 'score': 9.68}, {'connected_gene': 'SLC25A41', 'score': 8.52}, {'connected_gene': 'PRR22', 'score': 7.99}, {'connected_gene': 'CATSPERD', 'score': 5.97}, {'connected_gene': 'NRTN', 'score': 2.56}, {'connected_gene': 'PSPN', 'score': 2.11}, {'connected_gene': 'RFX2', 'score': 1.26}, {'connected_gene': 'GC19P005968', 'score': 0.44}, {'connected_gene': 'RANBP3', 'score': 0.37}]
chr19	GH19I005850	5850466	5851903	1.17	[{'connected_gene': 'FUT3', 'score': 550.77}, {'connected_gene': 'NRTN', 'score': 16.72}, {'connected_gene': 'DUS3L', 'score': 11.75}, {'connected_gene': 'PRR22', 'score': 11.73}, {'connected_gene': 'CATSPERD', 'score': 11.65}, {'connected_gene': 'LOC101928844', 'score': 0.77}]
chr19	GH19I005945	5945910	5956204	1.65	[{'connected_gene': 'NDUFA11', 'score': 20.09}, {'connected_gene': 'CAPS', 'score': 19.45}, {'connected_gene': 'FUT5', 'score': 15.06}, {'connected_gene': 'VMAC', 'score': 11.83}, {'connected_gene': 'ACSBG2', 'score': 11.15}, {'connected_gene': 'FUT3', 'score': 10.91}, {'connected_gene': 'FUT6', 'score': 10.89}, {'connected_gene': 'SAFB2', 'score': 1.56}, {'connected_gene': 'GC19P005968', 'score': 0.37}, {'connected_gene': 'RANBP3', 'score': 0.31}, {'connected_gene': 'ENSG00000267571', 'score': 0.28}]
chr19	GH19I005939	5939378	5940338	0.31	[{'connected_gene': 'NDUFA11', 'score': 12.02}, {'connected_gene': 'VMAC', 'score': 12.02}, {'connected_gene': 'FUT5', 'score': 11.95}, {'connected_gene': 'FUT3', 'score': 10.89}, {'connected_gene': 'FUT6', 'score': 10.87}, {'connected_gene': 'GC19P005968', 'score': 0.31}, {'connected_gene': 'ENSG00000267571', 'score': 0.31}, {'connected_gene': 'RANBP3', 'score': 0.28}]
chr19	GH19I005930	5930623	5932009	0.31	[{'connected_gene': 'NDUFA11', 'score': 12.22}, {'connected_gene': 'VMAC', 'score': 12.22}, {'connected_gene': 'FUT5', 'score': 12.12}, {'connected_gene': 'FUT3', 'score': 10.92}, {'connected_gene': 'FUT6', 'score': 10.89}, {'connected_gene': 'ENSG00000267571', 'score': 0.37}, {'connected_gene': 'GC19P005968', 'score': 0.28}, {'connected_gene': 'RANBP3', 'score': 0.25}]
chr19	GH19I005920	5920962	5922758	0.31	[{'connected_gene': 'NDUFA11', 'score': 13.93}, {'connected_gene': 'FUT3', 'score': 10.63}, {'connected_gene': 'FUT6', 'score': 10.61}, {'connected_gene': 'CAPS', 'score': 5.36}, {'connected_gene': 'ENSG00000267571', 'score': 0.44}, {'connected_gene': 'GC19P005968', 'score': 0.25}, {'connected_gene': 'RANBP3', 'score': 0.22}]
chr19	GH19I005845	5845030	5845305	0.38	[{'connected_gene': 'LOC101928844', 'score': 0.77}, {'connected_gene': 'FUT6', 'score': 0.44}, {'connected_gene': 'FUT3', 'score': 0.44}]
chr19	GH19I005851	5845908	5846121	0.2	[{'connected_gene': 'LOC101928844', 'score': 550.77}, {'connected_gene': 'FUT6', 'score': 0.44}, {'connected_gene': 'FUT3', 'score': 0.44}]
chr19	GH19I005846	5846610	5846759	0.63	[{'connected_gene': 'LOC101928844', 'score': 550.77}, {'connected_gene': 'FUT3', 'score': 0.77}, {'connected_gene': 'FUT6', 'score': 0.44}]
chr19	GH19I005849	5849340	5849567	0.31	[{'connected_gene': 'LOC101928844', 'score': 550.77}, {'connected_gene': 'FUT3', 'score': 0.77}]
chr19	GH19I005847	5847571	5847827	0.2	[{'connected_gene': 'LOC101928844', 'score': 550.77}, {'connected_gene': 'FUT3', 'score': 0.77}]
chr19	GH19I005848	5847897	5848313	0.2	[{'connected_gene': 'LOC101928844', 'score': 550.77}, {'connected_gene': 'FUT3', 'score': 0.77}]
chr19	GH19I005889	5889383	5890107	0.63	[{'connected_gene': 'GC19P005889', 'score': 550.77}, {'connected_gene': 'CAPS', 'score': 23.58}, {'connected_gene': 'NDUFA11', 'score': 20.43}, {'connected_gene': 'FUT3', 'score': 12.4}, {'connected_gene': 'FUT6', 'score': 12.37}, {'connected_gene': 'ENSG00000267740', 'score': 0.39}, {'connected_gene': 'ENSG00000266941', 'score': 0.39}]