PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000329402	[[39868577, 39868639], [39871683, 39871899], [39872029, 39872221]]	[[39871688, 39871899], [39872029, 39872124]]
NM_000805	[[39868577, 39868639], [39871683, 39871899], [39872029, 39872221]]	[[39871688, 39871899], [39872029, 39872124]]

Promoter

Chrom	Start	End	Description
chr17	39868577	39868585	CAGE_peak_1_at_GAST_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I041737	41737524	41741225	1.23	[{'connected_gene': 'HAP1', 'score': 18.0}, {'connected_gene': 'JUP', 'score': 12.14}, {'connected_gene': 'GAST', 'score': 11.77}, {'connected_gene': 'FKBP10', 'score': 11.7}, {'connected_gene': 'P3H4', 'score': 11.7}, {'connected_gene': 'KLHL11', 'score': 10.94}, {'connected_gene': 'KAT2A', 'score': 10.11}]
chr17	GH17I041705	41705005	41706620	1.3	[{'connected_gene': 'HAP1', 'score': 16.73}, {'connected_gene': 'RN7SL399P', 'score': 11.99}, {'connected_gene': 'FKBP10', 'score': 10.93}, {'connected_gene': 'P3H4', 'score': 10.93}, {'connected_gene': 'KLHL10', 'score': 10.75}, {'connected_gene': 'NT5C3B', 'score': 10.74}, {'connected_gene': 'ENSG00000267765', 'score': 5.03}, {'connected_gene': 'ZNF385C', 'score': 3.98}, {'connected_gene': 'TTC25', 'score': 1.3}, {'connected_gene': 'GAST', 'score': 0.44}, {'connected_gene': 'GC17P041692', 'score': 0.39}, {'connected_gene': 'GC17P041691', 'score': 0.39}]
chr17	GH17I041696	41696256	41697922	1.27	[{'connected_gene': 'HAP1', 'score': 17.34}, {'connected_gene': 'RN7SL399P', 'score': 11.79}, {'connected_gene': 'FKBP10', 'score': 10.87}, {'connected_gene': 'P3H4', 'score': 10.87}, {'connected_gene': 'NT5C3B', 'score': 10.27}, {'connected_gene': 'KLHL10', 'score': 10.27}, {'connected_gene': 'KLHL11', 'score': 10.25}, {'connected_gene': 'ZNF385C', 'score': 4.37}, {'connected_gene': 'GC17P041692', 'score': 0.44}, {'connected_gene': 'GC17P041691', 'score': 0.44}, {'connected_gene': 'GAST', 'score': 0.37}]
chr17	GH17I041712	41712277	41712336	0.61	[{'connected_gene': 'GAST', 'score': 550.77}, {'connected_gene': 'GC17P041692', 'score': 0.34}, {'connected_gene': 'GC17P041691', 'score': 0.34}]
chr17	GH17I041891	41891107	41893151	0.76	[{'connected_gene': 'NT5C3B', 'score': 32.6}, {'connected_gene': 'KLHL11', 'score': 12.15}, {'connected_gene': 'KLHL10', 'score': 11.61}, {'connected_gene': 'HAP1', 'score': 11.5}, {'connected_gene': 'RN7SL399P', 'score': 11.49}, {'connected_gene': 'FKBP10', 'score': 11.15}, {'connected_gene': 'P3H4', 'score': 11.15}, {'connected_gene': 'CNP', 'score': 10.82}, {'connected_gene': 'JUP', 'score': 10.77}, {'connected_gene': 'GAST', 'score': 10.03}, {'connected_gene': 'ENSG00000267632', 'score': 4.34}, {'connected_gene': 'GC17M041900', 'score': 0.44}, {'connected_gene': 'PIR36467', 'score': 0.44}, {'connected_gene': 'ENSG00000274630', 'score': 0.34}, {'connected_gene': 'ACLY', 'score': 0.28}]
chr17	GH17I041806	41806620	41807926	0.74	[{'connected_gene': 'NT5C3B', 'score': 36.76}, {'connected_gene': 'JUP', 'score': 12.35}, {'connected_gene': 'KLHL10', 'score': 11.93}, {'connected_gene': 'KLHL11', 'score': 11.44}, {'connected_gene': 'ENSG00000259623', 'score': 11.03}, {'connected_gene': 'CCR10', 'score': 10.81}, {'connected_gene': 'GAST', 'score': 10.37}, {'connected_gene': 'PIR33798', 'score': 0.77}, {'connected_gene': 'P3H4', 'score': 0.44}, {'connected_gene': 'PIR32942', 'score': 0.37}]
chr17	GH17I041901	41901195	41902223	0.31	[{'connected_gene': 'NT5C3B', 'score': 79.38}, {'connected_gene': 'KLHL10', 'score': 11.58}, {'connected_gene': 'KLHL11', 'score': 11.43}, {'connected_gene': 'GAST', 'score': 10.75}, {'connected_gene': 'CNP', 'score': 10.69}, {'connected_gene': 'GC17M041900', 'score': 0.77}, {'connected_gene': 'PIR36467', 'score': 0.77}, {'connected_gene': 'GC17P041919', 'score': 0.37}, {'connected_gene': 'ACLY', 'score': 0.31}]
chr17	GH17I041894	41894303	41897038	1	[{'connected_gene': 'NT5C3B', 'score': 79.28}, {'connected_gene': 'LOC108783654', 'score': 12.55}, {'connected_gene': 'KLHL11', 'score': 11.97}, {'connected_gene': 'KLHL10', 'score': 11.6}, {'connected_gene': 'ENSG00000267758', 'score': 11.0}, {'connected_gene': 'GAST', 'score': 10.75}, {'connected_gene': 'CNP', 'score': 10.68}, {'connected_gene': 'FKBP10', 'score': 6.14}, {'connected_gene': 'GC17M041900', 'score': 0.77}, {'connected_gene': 'PIR36467', 'score': 0.77}, {'connected_gene': 'ENSG00000274630', 'score': 0.31}, {'connected_gene': 'ACLY', 'score': 0.29}]
chr17	GH17I041695	41695989	41696238	1.08	[{'connected_gene': 'RN7SL399P', 'score': 11.45}, {'connected_gene': 'HAP1', 'score': 11.44}, {'connected_gene': 'FKBP10', 'score': 10.39}, {'connected_gene': 'P3H4', 'score': 10.39}, {'connected_gene': 'KLHL11', 'score': 10.25}, {'connected_gene': 'KLHL10', 'score': 9.64}, {'connected_gene': 'NT5C3B', 'score': 9.64}, {'connected_gene': 'GC17P041692', 'score': 0.77}, {'connected_gene': 'GC17P041691', 'score': 0.77}, {'connected_gene': 'GAST', 'score': 0.37}]
chr17	GH17I041716	41716794	41718746	0.96	[{'connected_gene': 'GC17P041719', 'score': 550.77}, {'connected_gene': 'RNA5SP442', 'score': 550.77}, {'connected_gene': 'JUP', 'score': 11.05}, {'connected_gene': 'FKBP10', 'score': 10.97}, {'connected_gene': 'P3H4', 'score': 10.97}, {'connected_gene': 'KLHL11', 'score': 10.74}, {'connected_gene': 'NT5C3B', 'score': 10.61}, {'connected_gene': 'KLHL10', 'score': 10.61}, {'connected_gene': 'HAP1', 'score': 9.96}, {'connected_gene': 'GAST', 'score': 0.44}]