PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000374479	[[24171566, 24172345], [24172563, 24172663], [24175138, 24175329], [24180849, 24181050], [24186287, 24186393], [24189623, 24189761], [24191980, 24192115], [24194387, 24194784]]	[[24172204, 24172345], [24172563, 24172663], [24175138, 24175329], [24180849, 24181050], [24186287, 24186393], [24189623, 24189761], [24191980, 24192115], [24194387, 24194776]]
NM_000147	[[24171566, 24172345], [24172563, 24172663], [24175138, 24175329], [24180849, 24181050], [24186287, 24186393], [24189623, 24189761], [24191980, 24192115], [24194387, 24194859]]	[[24172204, 24172345], [24172563, 24172663], [24175138, 24175329], [24180849, 24181050], [24186287, 24186393], [24189623, 24189761], [24191980, 24192115], [24194387, 24194776]]

Promoter

Chrom	Start	End	Description
chr1	24194771	24194851	CAGE_peak_1_at_FUCA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I023742	23742471	23745820	2.03	[{'connected_gene': 'ELOA', 'score': 564.81}, {'connected_gene': 'SRSF10', 'score': 17.84}, {'connected_gene': 'SRRM1', 'score': 16.05}, {'connected_gene': 'LINC01355', 'score': 13.13}, {'connected_gene': 'FUCA1', 'score': 10.4}, {'connected_gene': 'KDM1A', 'score': 9.98}, {'connected_gene': 'GC01P023754', 'score': 0.39}]
chr1	GH01I023902	23902533	23903201	1.04	[{'connected_gene': 'BTBD6P1', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 6.98}, {'connected_gene': 'E2F2', 'score': 4.93}, {'connected_gene': 'CNR2', 'score': 0.39}, {'connected_gene': 'GC01M023881', 'score': 0.34}]
chr1	GH01I023776	23776821	23780676	2.28	[{'connected_gene': 'PITHD1', 'score': 556.34}, {'connected_gene': 'ELOA-AS1', 'score': 550.77}, {'connected_gene': 'SRSF10', 'score': 22.17}, {'connected_gene': 'KDM1A', 'score': 14.07}, {'connected_gene': 'SRRM1', 'score': 12.23}, {'connected_gene': 'ELOA', 'score': 12.08}, {'connected_gene': 'FUCA1', 'score': 10.59}, {'connected_gene': 'LYPLA2', 'score': 0.39}]
chr1	GH01I023907	23907723	23914159	2.08	[{'connected_gene': 'CNR2', 'score': 557.14}, {'connected_gene': 'FUCA1', 'score': 19.87}, {'connected_gene': 'NCMAP', 'score': 4.86}, {'connected_gene': 'PNRC2', 'score': 4.62}, {'connected_gene': 'RPL11', 'score': 2.1}, {'connected_gene': 'ENSG00000232557', 'score': 0.77}]
chr1	GH01I023824	23824009	23826262	2.04	[{'connected_gene': 'HMGCL', 'score': 550.39}, {'connected_gene': 'FUCA1', 'score': 14.39}, {'connected_gene': 'LYPLA2', 'score': 11.89}, {'connected_gene': 'KDM1A', 'score': 9.72}, {'connected_gene': 'GC01P023838', 'score': 0.39}, {'connected_gene': 'LOC105376861', 'score': 0.39}, {'connected_gene': 'PIR41142', 'score': 0.34}]
chr1	GH01I023628	23628829	23630127	0.79	[{'connected_gene': 'MDS2', 'score': 17.04}, {'connected_gene': 'ID3', 'score': 12.15}, {'connected_gene': 'E2F2', 'score': 11.42}, {'connected_gene': 'ASAP3', 'score': 11.2}, {'connected_gene': 'FUCA1', 'score': 5.31}, {'connected_gene': 'GC01P023610', 'score': 0.37}, {'connected_gene': 'LOC729856', 'score': 0.26}]
chr1	GH01I023623	23623835	23624928	0.79	[{'connected_gene': 'MDS2', 'score': 11.56}, {'connected_gene': 'ID3', 'score': 11.45}, {'connected_gene': 'E2F2', 'score': 11.39}, {'connected_gene': 'FUCA1', 'score': 5.09}, {'connected_gene': 'GC01P023610', 'score': 0.39}, {'connected_gene': 'LOC729856', 'score': 0.25}]
chr1	GH01I023796	23796283	23802473	2.27	[{'connected_gene': 'GALE', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 12.29}, {'connected_gene': 'PIR41142', 'score': 0.77}, {'connected_gene': 'LOC105376860', 'score': 0.44}, {'connected_gene': 'HMGCL', 'score': 0.28}]
chr1	GH01I023886	23886694	23890424	1.02	[{'connected_gene': 'FUCA1', 'score': 6.06}, {'connected_gene': 'GC01M023881', 'score': 0.44}, {'connected_gene': 'BTBD6P1', 'score': 0.39}, {'connected_gene': 'CNR2', 'score': 0.34}]
chr1	GH01I023809	23809311	23811414	1.38	[{'connected_gene': 'FUCA1', 'score': 25.74}, {'connected_gene': 'PITHD1', 'score': 11.66}, {'connected_gene': 'ELOA-AS1', 'score': 11.66}, {'connected_gene': 'PIR41142', 'score': 0.44}, {'connected_gene': 'GC01P023838', 'score': 0.31}, {'connected_gene': 'HMGCL', 'score': 0.31}]
chr1	GH01I023895	23895002	23898120	1.12	[{'connected_gene': 'FUCA1', 'score': 18.55}, {'connected_gene': 'PITHD1', 'score': 10.9}, {'connected_gene': 'ELOA-AS1', 'score': 10.9}, {'connected_gene': 'SRSF10', 'score': 10.75}, {'connected_gene': 'BTBD6P1', 'score': 0.44}, {'connected_gene': 'GC01M023881', 'score': 0.39}, {'connected_gene': 'CNR2', 'score': 0.37}]
chr1	GH01I023899	23899151	23899320	0.83	[{'connected_gene': 'FUCA1', 'score': 12.93}, {'connected_gene': 'PITHD1', 'score': 10.9}, {'connected_gene': 'ELOA-AS1', 'score': 10.9}, {'connected_gene': 'SRSF10', 'score': 10.75}, {'connected_gene': 'BTBD6P1', 'score': 0.77}, {'connected_gene': 'CNR2', 'score': 0.39}, {'connected_gene': 'GC01M023881', 'score': 0.37}]
chr1	GH01I023915	23915713	23917476	1.29	[{'connected_gene': 'FUCA1', 'score': 4.96}, {'connected_gene': 'CNR2', 'score': 0.77}, {'connected_gene': 'GC01P023921', 'score': 0.44}]
chr1	GH01I023829	23829911	23830777	0.77	[{'connected_gene': 'FUCA1', 'score': 8.36}, {'connected_gene': 'HMGCL', 'score': 7.96}, {'connected_gene': 'GC01P023838', 'score': 0.44}, {'connected_gene': 'LOC105376861', 'score': 0.44}, {'connected_gene': 'PIR41142', 'score': 0.31}]
chr1	GH01I023726	23726589	23729681	1.12	[{'connected_gene': 'FUCA1', 'score': 8.46}, {'connected_gene': 'HMGCL', 'score': 4.71}, {'connected_gene': 'GC01P023723', 'score': 0.77}, {'connected_gene': 'GC01M023736', 'score': 0.44}]
chr1	GH01I023817	23817131	23817280	0.31	[{'connected_gene': 'FUCA1', 'score': 11.45}, {'connected_gene': 'PIR41142', 'score': 0.37}, {'connected_gene': 'GC01P023838', 'score': 0.34}, {'connected_gene': 'HMGCL', 'score': 0.34}]
chr1	GH01I023867	23867343	23869456	2.25	[{'connected_gene': 'FUCA1', 'score': 565.78}, {'connected_gene': 'SRRM1', 'score': 24.81}, {'connected_gene': 'SRSF10', 'score': 19.25}, {'connected_gene': 'RPL11', 'score': 13.7}, {'connected_gene': 'LINC01355', 'score': 13.09}, {'connected_gene': 'ZNF436-AS1', 'score': 12.45}, {'connected_gene': 'PNRC2', 'score': 11.83}, {'connected_gene': 'ELOA', 'score': 11.43}, {'connected_gene': 'HNRNPR', 'score': 9.81}, {'connected_gene': 'GC01M023881', 'score': 0.39}]
chr1	GH01I023719	23719394	23721420	0.8	[{'connected_gene': 'FUCA1', 'score': 6.53}, {'connected_gene': 'GC01P023723', 'score': 0.77}, {'connected_gene': 'GC01M023708', 'score': 0.39}]
chr1	GH01I023625	23625233	23626069	0.87	[{'connected_gene': 'ZNF436-AS1', 'score': 52.06}, {'connected_gene': 'HNRNPR', 'score': 41.56}, {'connected_gene': 'SRSF10', 'score': 34.94}, {'connected_gene': 'LINC01355', 'score': 33.99}, {'connected_gene': 'KDM1A', 'score': 31.86}, {'connected_gene': 'RPL11', 'score': 20.51}, {'connected_gene': 'PNRC2', 'score': 11.8}, {'connected_gene': 'MDS2', 'score': 11.56}, {'connected_gene': 'ID3', 'score': 11.44}, {'connected_gene': 'E2F2', 'score': 11.39}, {'connected_gene': 'FUCA1', 'score': 11.25}, {'connected_gene': 'ASAP3', 'score': 10.43}, {'connected_gene': 'ELOA', 'score': 9.96}, {'connected_gene': 'GC01P023610', 'score': 0.37}, {'connected_gene': 'LOC729856', 'score': 0.26}]
chr1	GH01I023789	23789186	23794550	2.27	[{'connected_gene': 'LYPLA2', 'score': 550.77}, {'connected_gene': 'LOC105376860', 'score': 550.77}, {'connected_gene': 'LINC01355', 'score': 13.67}, {'connected_gene': 'SRSF10', 'score': 12.33}, {'connected_gene': 'FUCA1', 'score': 10.02}, {'connected_gene': 'SRRM1', 'score': 9.93}]
chr1	GH01I023626	23626382	23628085	1.22	[{'connected_gene': 'SRSF10', 'score': 48.12}, {'connected_gene': 'RPL11', 'score': 37.61}, {'connected_gene': 'PNRC2', 'score': 33.32}, {'connected_gene': 'ELOA', 'score': 29.87}, {'connected_gene': 'LINC01355', 'score': 22.07}, {'connected_gene': 'FUCA1', 'score': 14.52}, {'connected_gene': 'HNRNPR', 'score': 13.43}, {'connected_gene': 'ID3', 'score': 12.15}, {'connected_gene': 'MDS2', 'score': 11.89}, {'connected_gene': 'E2F2', 'score': 11.42}, {'connected_gene': 'ASAP3', 'score': 11.2}, {'connected_gene': 'KDM1A', 'score': 9.89}, {'connected_gene': 'GC01P023610', 'score': 0.37}, {'connected_gene': 'LOC729856', 'score': 0.26}]
chr1	GH01I023795	23795009	23795490	0.46	[{'connected_gene': 'LOC105376860', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 10.12}, {'connected_gene': 'LYPLA2', 'score': 0.77}, {'connected_gene': 'GALE', 'score': 0.44}]
chr1	GH01I024641	24641336	24645471	2.39	[{'connected_gene': 'SRRM1', 'score': 573.0}, {'connected_gene': 'SRSF10', 'score': 35.25}, {'connected_gene': 'ENSG00000261349', 'score': 21.38}, {'connected_gene': 'ELOA', 'score': 18.45}, {'connected_gene': 'NCMAP', 'score': 15.33}, {'connected_gene': 'SYF2', 'score': 13.48}, {'connected_gene': 'RPL11', 'score': 11.87}, {'connected_gene': 'PNRC2', 'score': 11.77}, {'connected_gene': 'FUCA1', 'score': 11.21}, {'connected_gene': 'MAN1C1', 'score': 10.09}, {'connected_gene': 'RUNX3', 'score': 1.89}, {'connected_gene': 'GC01P024703', 'score': 0.21}]
chr1	GH01I023930	23930531	23931990	0.83	[{'connected_gene': 'GC01P023930', 'score': 550.77}, {'connected_gene': 'PNRC2', 'score': 12.96}, {'connected_gene': 'FUCA1', 'score': 12.38}, {'connected_gene': 'SRSF10', 'score': 12.06}, {'connected_gene': 'LYPLA2', 'score': 11.39}, {'connected_gene': 'ENSG00000230228', 'score': 0.37}]
chr1	GH01I023723	23723494	23724014	0.57	[{'connected_gene': 'GC01P023723', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 7.78}, {'connected_gene': 'ELOA', 'score': 7.37}, {'connected_gene': 'GC01M023736', 'score': 0.39}]
chr1	GH01I023882	23882357	23883795	0.43	[{'connected_gene': 'GC01M023881', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 6.39}, {'connected_gene': 'PNRC2', 'score': 5.05}, {'connected_gene': 'BTBD6P1', 'score': 0.37}, {'connected_gene': 'CNR2', 'score': 0.29}]
chr1	GH01I023737	23737407	23737720	0.26	[{'connected_gene': 'GC01M023736', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 7.12}, {'connected_gene': 'PNRC2', 'score': 2.23}, {'connected_gene': 'RPL11', 'score': 1.61}, {'connected_gene': 'ELOA', 'score': 0.44}]
chr1	GH01I023904	23904024	23906911	0.8	[{'connected_gene': 'ENSG00000232557', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 5.6}, {'connected_gene': 'NCMAP', 'score': 4.37}, {'connected_gene': 'BTBD6P1', 'score': 0.77}, {'connected_gene': 'CNR2', 'score': 0.44}]
chr1	GH01I023919	23919592	23921627	1.25	[{'connected_gene': 'GC01P023921', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 4.79}, {'connected_gene': 'MYOM3', 'score': 4.79}, {'connected_gene': 'NCMAP', 'score': 4.62}, {'connected_gene': 'CNR2', 'score': 0.44}]
chr1	GH01I023865	23865052	23866260	0.75	[{'connected_gene': 'GC01M023866', 'score': 550.77}, {'connected_gene': 'PIR51704', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 15.68}]
chr1	GH01I023838	23838044	23839260	1.32	[{'connected_gene': 'GC01P023838', 'score': 550.77}, {'connected_gene': 'LOC105376861', 'score': 550.77}, {'connected_gene': 'HMGCL', 'score': 550.77}, {'connected_gene': 'FUCA1', 'score': 27.0}, {'connected_gene': 'GC01M023866', 'score': 0.31}, {'connected_gene': 'PIR51704', 'score': 0.31}]