PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000542434	[[45869660, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45940955, 45941392]]	[[45869727, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45940955, 45941135]]
ENST00000374391	[[45869674, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941561]]	[[45869727, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941135]]
ENST00000483623	[[45919531, 45919595], [45920407, 45920580], [45923808, 45923934]]	None
ENST00000475300	[[45935877, 45936081], [45936791, 45937033]]	None
ENST00000493336	[[45938060, 45938664], [45938863, 45938895]]	None
ENST00000481117	[[45938689, 45938985], [45939175, 45939276], [45939563, 45939680]]	None
ENST00000498461	[[45938868, 45938985], [45939175, 45939662]]	None
NM_001256153	[[45869613, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938581, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941567]]	[[45869727, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938581, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941135]]
NM_001320861	[[45869613, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938572, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941567]]	[[45869727, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938572, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941135]]
NM_001256154	[[45869613, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45940955, 45941567]]	[[45869727, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45940955, 45941135]]
NM_000698	[[45869613, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941567]]	[[45869727, 45869877], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941135]]
NM_001320862	[[45869613, 45869915], [45877930, 45878129], [45891302, 45891384], [45907638, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941567]]	[[45907642, 45907761], [45919488, 45919595], [45920407, 45920580], [45924065, 45924212], [45935877, 45936081], [45936791, 45936878], [45938485, 45938664], [45938863, 45938985], [45939175, 45939276], [45939563, 45939734], [45940955, 45941135]]

Promoter

Chrom	Start	End	Description
chr10	45869615	45869647	CAGE_peak_2_at_ALOX5_5end
chr10	45869652	45869680	CAGE_peak_1_at_ALOX5_5end
chr10	45869683	45869708	CAGE_peak_3_at_ALOX5_5end
chr10	45869811	45869822	CAGE_peak_4_at_ALOX5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I045425	45425153	45425302	0.51	[{'connected_gene': 'ZFAND4', 'score': 15.61}, {'connected_gene': 'LOC102724323', 'score': 12.53}, {'connected_gene': 'GC10M045366', 'score': 0.44}, {'connected_gene': 'GC10P045436', 'score': 0.39}, {'connected_gene': 'ALOX5', 'score': 0.23}]
chr10	GH10I044957	44957669	44969963	2.52	[{'connected_gene': 'RASSF4', 'score': 558.78}, {'connected_gene': 'WASHC2C', 'score': 36.95}, {'connected_gene': 'TMEM72-AS1', 'score': 24.31}, {'connected_gene': 'ZNF22', 'score': 16.47}, {'connected_gene': 'AGAP4', 'score': 15.32}, {'connected_gene': 'C10orf25', 'score': 13.01}, {'connected_gene': 'ENSG00000223462', 'score': 12.97}, {'connected_gene': 'ENSG00000234504', 'score': 11.77}, {'connected_gene': 'TMEM72', 'score': 10.31}, {'connected_gene': 'CEP164P1', 'score': 6.66}, {'connected_gene': 'ALOX5', 'score': 2.41}, {'connected_gene': 'OR13A1', 'score': 1.49}, {'connected_gene': 'ENSG00000273363', 'score': 0.77}, {'connected_gene': 'GC10M044957', 'score': 0.77}, {'connected_gene': 'LOC105378281', 'score': 0.44}]
chr10	GH10I044925	44925474	44925879	0.74	[{'connected_gene': 'RASSF4', 'score': 11.04}, {'connected_gene': 'TMEM72-AS1', 'score': 11.04}, {'connected_gene': 'ZNF22', 'score': 10.94}, {'connected_gene': 'C10orf25', 'score': 10.93}, {'connected_gene': 'TMEM72', 'score': 1.78}, {'connected_gene': 'ALOX5', 'score': 1.17}, {'connected_gene': 'ENSG00000234504', 'score': 0.44}, {'connected_gene': 'ENSG00000223462', 'score': 0.39}]
chr10	GH10I044927	44927060	44928020	0.85	[{'connected_gene': 'RASSF4', 'score': 11.55}, {'connected_gene': 'TMEM72-AS1', 'score': 11.55}, {'connected_gene': 'C10orf25', 'score': 10.94}, {'connected_gene': 'ZNF22', 'score': 10.94}, {'connected_gene': 'TMEM72', 'score': 10.0}, {'connected_gene': 'ALOX5', 'score': 1.33}, {'connected_gene': 'ENSG00000234504', 'score': 0.44}, {'connected_gene': 'ENSG00000223462', 'score': 0.44}]
chr10	GH10I045378	45378962	45380922	0.98	[{'connected_gene': 'OR13A1', 'score': 14.24}, {'connected_gene': 'ALOX5', 'score': 13.77}, {'connected_gene': 'WASHC2C', 'score': 9.06}, {'connected_gene': 'GC10M045391', 'score': 0.39}, {'connected_gene': 'GC10M045366', 'score': 0.28}]
chr10	GH10I045377	45377471	45378691	0.66	[{'connected_gene': 'OR13A1', 'score': 12.31}, {'connected_gene': 'ALOX5', 'score': 0.77}, {'connected_gene': 'GC10M045391', 'score': 0.39}, {'connected_gene': 'GC10M045366', 'score': 0.28}]
chr10	GH10I045353	45353906	45354959	0.8	[{'connected_gene': 'OR13A1', 'score': 14.25}, {'connected_gene': 'ALOX5', 'score': 7.94}]
chr10	GH10I045395	45395424	45396396	0.31	[{'connected_gene': 'OR13A1', 'score': 6.37}, {'connected_gene': 'MARCH8', 'score': 5.93}, {'connected_gene': 'ALOX5', 'score': 5.41}, {'connected_gene': 'ZFAND4', 'score': 5.08}, {'connected_gene': 'AGAP4', 'score': 4.35}, {'connected_gene': 'GC10M045391', 'score': 0.77}, {'connected_gene': 'PIR47812', 'score': 0.39}, {'connected_gene': 'GC10M045366', 'score': 0.34}]
chr10	GH10I044945	44945708	44950936	1.22	[{'connected_gene': 'TMEM72', 'score': 20.24}, {'connected_gene': 'C10orf25', 'score': 10.9}, {'connected_gene': 'ZNF22', 'score': 10.9}, {'connected_gene': 'RASSF4', 'score': 7.14}, {'connected_gene': 'ENSG00000227683', 'score': 5.25}, {'connected_gene': 'TMEM72-AS1', 'score': 4.68}, {'connected_gene': 'RSU1P2', 'score': 4.58}, {'connected_gene': 'ALOX5', 'score': 4.33}, {'connected_gene': 'ENSG00000223462', 'score': 0.39}]
chr10	GH10I045249	45249602	45251200	1.05	[{'connected_gene': 'WASHC2C', 'score': 10.3}, {'connected_gene': 'AGAP4', 'score': 7.35}, {'connected_gene': 'ENSG00000227683', 'score': 6.36}, {'connected_gene': 'ALOX5', 'score': 4.08}, {'connected_gene': 'CUBNP2', 'score': 0.77}, {'connected_gene': 'OR6D1P', 'score': 0.44}]
chr10	GH10I045726	45726571	45728201	2.09	[{'connected_gene': 'WASHC2C', 'score': 587.26}, {'connected_gene': 'ENSG00000228702', 'score': 550.77}, {'connected_gene': 'FAM21FP', 'score': 550.77}, {'connected_gene': 'PARGP1', 'score': 57.63}, {'connected_gene': 'AGAP4', 'score': 26.84}, {'connected_gene': 'LOC105378289', 'score': 19.78}, {'connected_gene': 'ZFAND4', 'score': 19.33}, {'connected_gene': 'ENSG00000273363', 'score': 11.86}, {'connected_gene': 'AGAP10P', 'score': 10.48}, {'connected_gene': 'DEPP1', 'score': 9.69}, {'connected_gene': 'ALOX5', 'score': 4.75}, {'connected_gene': 'PIR32972', 'score': 0.31}]
chr10	GH10I045432	45432118	45432514	0.36	[{'connected_gene': 'ALOX5', 'score': 2.98}, {'connected_gene': 'ZFAND4', 'score': 1.26}, {'connected_gene': 'WASHC2C', 'score': 1.21}, {'connected_gene': 'GC10P045436', 'score': 0.77}, {'connected_gene': 'GC10M045366', 'score': 0.37}]
chr10	GH10I045373	45373062	45377372	2.42	[{'connected_gene': 'ALOX5', 'score': 564.21}, {'connected_gene': 'OR13A1', 'score': 12.76}, {'connected_gene': 'AGAP10P', 'score': 10.57}, {'connected_gene': 'WASHC2C', 'score': 5.26}, {'connected_gene': 'ZFAND4', 'score': 2.67}, {'connected_gene': 'GC10M045391', 'score': 0.37}, {'connected_gene': 'GC10M045366', 'score': 0.26}]
chr10	GH10I045430	45430481	45430558	0.43	[{'connected_gene': 'ALOX5', 'score': 5.48}, {'connected_gene': 'MARCH8', 'score': 2.64}, {'connected_gene': 'WASHC2C', 'score': 1.63}, {'connected_gene': 'ZFAND4', 'score': 1.54}, {'connected_gene': 'GC10P045436', 'score': 0.44}, {'connected_gene': 'GC10M045366', 'score': 0.39}]
chr10	GH10I045418	45418132	45423303	1.47	[{'connected_gene': 'ALOX5', 'score': 24.47}, {'connected_gene': 'AGAP4', 'score': 12.75}, {'connected_gene': 'ZFAND4', 'score': 12.59}, {'connected_gene': 'LOC102724323', 'score': 12.57}, {'connected_gene': 'WASHC2C', 'score': 11.68}, {'connected_gene': 'MARCH8', 'score': 7.2}, {'connected_gene': 'OR13A1', 'score': 6.19}, {'connected_gene': 'GC10M045366', 'score': 0.77}, {'connected_gene': 'GC10P045436', 'score': 0.37}]
chr10	GH10I045383	45383686	45384350	0.51	[{'connected_gene': 'ALOX5', 'score': 0.44}, {'connected_gene': 'GC10M045391', 'score': 0.44}, {'connected_gene': 'GC10M045366', 'score': 0.29}]
chr10	GH10I045058	45058273	45059472	0.66	[{'connected_gene': 'C10orf25', 'score': 28.15}, {'connected_gene': 'ZNF22', 'score': 10.7}, {'connected_gene': 'ALOX5', 'score': 2.85}, {'connected_gene': 'GC10P045056', 'score': 0.77}, {'connected_gene': 'GC10M045074', 'score': 0.39}, {'connected_gene': 'CEP164P1', 'score': 0.37}, {'connected_gene': 'ENSG00000277757', 'score': 0.17}]
chr10	GH10I045514	45513805	45514921	0.58	[{'connected_gene': 'MARCH8', 'score': 22.88}, {'connected_gene': 'ALOX5', 'score': 4.46}, {'connected_gene': 'GC10P045511', 'score': 0.77}]
chr10	GH10I045427	45427801	45428000	0.31	[{'connected_gene': 'LOC102724323', 'score': 13.03}, {'connected_gene': 'GC10P045436', 'score': 0.44}, {'connected_gene': 'GC10M045366', 'score': 0.39}, {'connected_gene': 'ALOX5', 'score': 0.23}]
chr10	GH10I045426	45426253	45426402	0.83	[{'connected_gene': 'LOC102724323', 'score': 12.53}, {'connected_gene': 'MARCH8', 'score': 4.74}, {'connected_gene': 'GC10P045436', 'score': 0.44}, {'connected_gene': 'GC10M045366', 'score': 0.39}, {'connected_gene': 'ALOX5', 'score': 0.23}]
chr10	GH10I045408	45408954	45409263	1.06	[{'connected_gene': 'PIR47812', 'score': 550.77}, {'connected_gene': 'ALOX5', 'score': 16.79}, {'connected_gene': 'LOC102724323', 'score': 12.05}, {'connected_gene': 'WASHC2C', 'score': 2.36}, {'connected_gene': 'GC10M045366', 'score': 0.44}, {'connected_gene': 'GC10M045391', 'score': 0.37}]
chr10	GH10I045409	45407834	45407862	0.73	[{'connected_gene': 'PIR47812', 'score': 550.77}, {'connected_gene': 'ALOX5', 'score': 12.28}, {'connected_gene': 'LOC102724323', 'score': 12.04}, {'connected_gene': 'GC10M045366', 'score': 0.44}, {'connected_gene': 'GC10M045391', 'score': 0.37}]
chr10	GH10I045407	45407713	45407802	0.73	[{'connected_gene': 'PIR47812', 'score': 550.77}, {'connected_gene': 'ALOX5', 'score': 12.28}, {'connected_gene': 'LOC102724323', 'score': 12.04}, {'connected_gene': 'GC10M045366', 'score': 0.44}, {'connected_gene': 'GC10M045391', 'score': 0.37}]
chr10	GH10I045404	45404231	45404402	0.9	[{'connected_gene': 'PIR47812', 'score': 0.44}, {'connected_gene': 'GC10M045366', 'score': 0.39}, {'connected_gene': 'GC10M045391', 'score': 0.39}, {'connected_gene': 'ALOX5', 'score': 0.29}]
chr10	GH10I045405	45404493	45404642	0.84	[{'connected_gene': 'PIR47812', 'score': 0.44}, {'connected_gene': 'GC10M045366', 'score': 0.39}, {'connected_gene': 'GC10M045391', 'score': 0.39}, {'connected_gene': 'ALOX5', 'score': 0.29}]
chr10	GH10I045433	45433585	45434853	0.72	[{'connected_gene': 'GC10P045436', 'score': 0.77}, {'connected_gene': 'GC10M045366', 'score': 0.37}, {'connected_gene': 'ALOX5', 'score': 0.21}]
chr10	GH10I044939	44939024	44939295	0.61	[{'connected_gene': 'ENSG00000223462', 'score': 550.77}, {'connected_gene': 'AGAP4', 'score': 14.33}, {'connected_gene': 'AGAP10P', 'score': 10.26}, {'connected_gene': 'RASSF4', 'score': 6.36}, {'connected_gene': 'ALOX5', 'score': 3.23}, {'connected_gene': 'OR13A1', 'score': 1.64}, {'connected_gene': 'TMEM72-AS1', 'score': 0.34}]
chr10	GH10I045437	45437213	45438008	0.92	[{'connected_gene': 'GC10P045436', 'score': 550.77}, {'connected_gene': 'LOC102724323', 'score': 0.37}, {'connected_gene': 'ALOX5', 'score': 0.21}]
chr10	GH10I045159	45159625	45161546	0.67	[{'connected_gene': 'GC10M045156', 'score': 550.77}, {'connected_gene': 'FAM21FP', 'score': 12.19}, {'connected_gene': 'PARGP1', 'score': 10.3}, {'connected_gene': 'ALOX5', 'score': 2.07}, {'connected_gene': 'MIR3156-1', 'score': 0.77}, {'connected_gene': 'ANKRD30BP3', 'score': 0.44}, {'connected_gene': 'ENSG00000243349', 'score': 0.39}]