PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000243662	[[87846409, 87847308], [87882842, 87883123], [87908350, 87908635]]	[[87847155, 87847308], [87882842, 87883123], [87908350, 87908552]]
ENST00000531138	[[87846631, 87847308], [87908350, 87908601]]	[[87847291, 87847308], [87908350, 87908601]]
ENST00000526372	[[87846779, 87847308], [87882842, 87883123], [87908405, 87908602]]	[[87847155, 87847308], [87882842, 87883123], [87908405, 87908602]]
NM_022337	[[87846414, 87847308], [87882842, 87883123], [87908350, 87908635]]	[[87847155, 87847308], [87882842, 87883123], [87908350, 87908552]]

Promoter

Chrom	Start	End	Description
chr11	87908600	87908680	CAGE_peak_1_at_RAB38_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I088169	88169002	88170428	0.4	[{'connected_gene': 'RAB38', 'score': 9.79}, {'connected_gene': 'ENSG00000279733', 'score': 0.77}, {'connected_gene': 'GC11P088152', 'score': 0.37}]
chr11	GH11I088188	88188693	88188842	0.43	[{'connected_gene': 'RAB38', 'score': 9.98}, {'connected_gene': 'PIR47502', 'score': 0.44}, {'connected_gene': 'GC11M088197', 'score': 0.39}, {'connected_gene': 'GC11P088152', 'score': 0.28}]
chr11	GH11I088102	88102062	88105142	1	[{'connected_gene': 'RAB38', 'score': 5.85}, {'connected_gene': 'ENSG00000206690', 'score': 0.77}, {'connected_gene': 'ENSG00000255241', 'score': 0.44}, {'connected_gene': 'GC11P088071', 'score': 0.29}, {'connected_gene': 'GC11M088128', 'score': 0.28}]
chr11	GH11I088171	88171952	88176351	2.28	[{'connected_gene': 'RAB38', 'score': 563.36}, {'connected_gene': 'ENSG00000279733', 'score': 0.44}, {'connected_gene': 'GC11P088152', 'score': 0.34}]
chr11	GH11I088232	88232013	88232162	0.46	[{'connected_gene': 'CTSC', 'score': 12.03}, {'connected_gene': 'RAB38', 'score': 7.03}, {'connected_gene': 'GC11M088197', 'score': 0.29}, {'connected_gene': 'GC11P088152', 'score': 0.18}]
chr11	GH11I088150	88150722	88154226	0.56	[{'connected_gene': 'GC11P088152', 'score': 550.77}, {'connected_gene': 'RAB38', 'score': 13.38}, {'connected_gene': 'ENSG00000255241', 'score': 10.24}, {'connected_gene': 'ENSG00000255102', 'score': 10.24}, {'connected_gene': 'ENSG00000206690', 'score': 10.24}, {'connected_gene': 'GRM5-AS1', 'score': 9.1}, {'connected_gene': 'CTSC', 'score': 4.66}, {'connected_gene': 'ENSG00000279733', 'score': 0.37}]
chr11	GH11I087472	87472858	87474186	0.31	[{'connected_gene': 'PIR42100', 'score': 550.77}, {'connected_gene': 'RAB38', 'score': 4.69}, {'connected_gene': 'HMGB3P25', 'score': 0.44}, {'connected_gene': 'GC11P087444', 'score': 0.31}]
chr11	GH11I088178	88178672	88180892	0.93	[{'connected_gene': 'PIR47502', 'score': 550.77}, {'connected_gene': 'RAB38', 'score': 15.28}, {'connected_gene': 'ENSG00000206690', 'score': 10.35}, {'connected_gene': 'ENSG00000255241', 'score': 10.34}, {'connected_gene': 'ENSG00000255102', 'score': 10.34}, {'connected_gene': 'GC11M088197', 'score': 0.34}, {'connected_gene': 'GC11P088152', 'score': 0.31}]
chr11	GH11I088138	88138524	88138635	0.22	[{'connected_gene': 'GC11M088128', 'score': 550.77}, {'connected_gene': 'RAB38', 'score': 18.25}, {'connected_gene': 'ENSG00000206690', 'score': 0.28}]