PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_012197	[[125703287, 125703372], [125719289, 125719488], [125746763, 125746998], [125748493, 125748698], [125751575, 125751750], [125752334, 125752492], [125758319, 125758430], [125758817, 125758884], [125759537, 125759640], [125760875, 125761045], [125772632, 125772807], [125777821, 125777915], [125782587, 125782738], [125827626, 125827740], [125832628, 125832703], [125835830, 125835956], [125836563, 125836707], [125838523, 125838565], [125838912, 125839041], [125852036, 125852129], [125852553, 125852664], [125860019, 125860124], [125860993, 125861077], [125861756, 125861828], [125863844, 125864042], [125865369, 125867147]]	[[125719338, 125719488], [125746763, 125746998], [125748493, 125748698], [125751575, 125751750], [125752334, 125752492], [125758319, 125758430], [125758817, 125758884], [125759537, 125759640], [125760875, 125761045], [125772632, 125772807], [125777821, 125777915], [125782587, 125782738], [125827626, 125827740], [125832628, 125832703], [125835830, 125835956], [125836563, 125836707], [125838523, 125838565], [125838912, 125839041], [125852036, 125852129], [125852553, 125852664], [125860019, 125860124], [125860993, 125861077], [125861756, 125861828], [125863844, 125864042], [125865369, 125865492]]

Promoter

Chrom	Start	End	Description
chr9	125703282	125703337	CAGE_peak_1_at_RABGAP1_5end
chr9	125795904	125795957	CAGE_peak_2_at_RABGAP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I123173	123173192	123177391	0.96	[{'connected_gene': 'MIR600HG', 'score': 10.66}, {'connected_gene': 'MIR600', 'score': 10.65}, {'connected_gene': 'STRBP', 'score': 10.53}, {'connected_gene': 'RABGAP1', 'score': 8.53}, {'connected_gene': 'GC09M123183', 'score': 0.22}, {'connected_gene': 'PIR44660', 'score': 0.22}]
chr9	GH09I123044	123044682	123044911	0.51	[{'connected_gene': 'MIR600', 'score': 9.51}, {'connected_gene': 'MIR600HG', 'score': 9.5}, {'connected_gene': 'RABGAP1', 'score': 8.05}, {'connected_gene': 'GPR21', 'score': 0.39}, {'connected_gene': 'LOC100422501', 'score': 0.37}]
chr9	GH09I123048	123048322	123050493	1.24	[{'connected_gene': 'MIR600', 'score': 10.38}, {'connected_gene': 'MIR600HG', 'score': 10.38}, {'connected_gene': 'RABGAP1', 'score': 4.65}, {'connected_gene': 'LOC100422501', 'score': 0.39}, {'connected_gene': 'GPR21', 'score': 0.37}]
chr9	GH09I123066	123066285	123068085	0.2	[{'connected_gene': 'MIR600', 'score': 10.86}, {'connected_gene': 'MIR600HG', 'score': 10.84}, {'connected_gene': 'RABGAP1', 'score': 4.44}, {'connected_gene': 'LOC100422501', 'score': 0.77}]
chr9	GH09I123102	123102882	123103031	0.52	[{'connected_gene': 'MIR600', 'score': 0.44}, {'connected_gene': 'LOC100422501', 'score': 0.28}, {'connected_gene': 'RABGAP1', 'score': 0.1}]
chr9	GH09I123438	123438336	123439534	0.69	[{'connected_gene': 'DENND1A', 'score': 2.02}, {'connected_gene': 'GPR21', 'score': 1.84}, {'connected_gene': 'RABGAP1', 'score': 1.19}, {'connected_gene': 'GC09P123406', 'score': 0.29}, {'connected_gene': 'MIR7150', 'score': 0.25}]
chr9	GH09I122930	122930264	122933238	2.05	[{'connected_gene': 'ZBTB26', 'score': 550.77}, {'connected_gene': 'RABGAP1', 'score': 7.57}, {'connected_gene': 'ENSG00000261094', 'score': 0.44}]
chr9	GH09I123224	123224569	123226723	0.89	[{'connected_gene': 'STRBP', 'score': 11.58}, {'connected_gene': 'MIR600HG', 'score': 11.31}, {'connected_gene': 'MIR600', 'score': 11.31}, {'connected_gene': 'RABGAP1', 'score': 7.84}, {'connected_gene': 'GC09M123183', 'score': 0.14}, {'connected_gene': 'PIR44660', 'score': 0.14}]
chr9	GH09I123097	123097035	123097069	0.2	[{'connected_gene': 'STRBP', 'score': 10.59}, {'connected_gene': 'MIR600', 'score': 0.39}, {'connected_gene': 'LOC100422501', 'score': 0.29}, {'connected_gene': 'RABGAP1', 'score': 0.1}]
chr9	GH09I123098	123097351	123098583	0.2	[{'connected_gene': 'STRBP', 'score': 10.77}, {'connected_gene': 'MIR600', 'score': 0.39}, {'connected_gene': 'LOC100422501', 'score': 0.29}, {'connected_gene': 'RABGAP1', 'score': 0.1}]
chr9	GH09I123120	123120956	123121949	0.59	[{'connected_gene': 'STRBP', 'score': 9.88}, {'connected_gene': 'SNORD90', 'score': 9.42}, {'connected_gene': 'RABGAP1', 'score': 6.39}, {'connected_gene': 'GC09M123183', 'score': 0.77}, {'connected_gene': 'PIR44660', 'score': 0.77}]
chr9	GH09I123296	123296232	123298386	0.78	[{'connected_gene': 'STRBP', 'score': 11.96}, {'connected_gene': 'ZBTB26', 'score': 11.53}, {'connected_gene': 'MIR600HG', 'score': 10.33}, {'connected_gene': 'MIR600', 'score': 10.33}, {'connected_gene': 'RABGAP1', 'score': 6.66}, {'connected_gene': 'GC09M123300', 'score': 0.77}]
chr9	GH09I123233	123233648	123236184	0.65	[{'connected_gene': 'STRBP', 'score': 12.13}, {'connected_gene': 'CRB2', 'score': 11.52}, {'connected_gene': 'MIR600HG', 'score': 11.21}, {'connected_gene': 'MIR600', 'score': 11.21}, {'connected_gene': 'RABGAP1', 'score': 5.04}, {'connected_gene': 'GC09M123183', 'score': 0.13}, {'connected_gene': 'PIR44660', 'score': 0.13}]
chr9	GH09I123095	123095001	123096485	0.75	[{'connected_gene': 'STRBP', 'score': 10.59}, {'connected_gene': 'RABGAP1', 'score': 8.0}, {'connected_gene': 'MIR600', 'score': 0.37}, {'connected_gene': 'LOC100422501', 'score': 0.29}]
chr9	GH09I123425	123425511	123425746	0.33	[{'connected_gene': 'GPR21', 'score': 2.21}, {'connected_gene': 'RABGAP1', 'score': 1.34}, {'connected_gene': 'CRB2', 'score': 1.25}, {'connected_gene': 'GC09P123406', 'score': 0.37}, {'connected_gene': 'MIR7150', 'score': 0.22}, {'connected_gene': 'DENND1A', 'score': 0.03}]
chr9	GH09I123034	123034107	123037469	0.86	[{'connected_gene': 'GPR21', 'score': 0.44}, {'connected_gene': 'LOC100422501', 'score': 0.31}, {'connected_gene': 'RABGAP1', 'score': 0.16}]
chr9	GH09I123041	123041069	123042777	0.43	[{'connected_gene': 'GPR21', 'score': 0.39}, {'connected_gene': 'LOC100422501', 'score': 0.34}, {'connected_gene': 'RABGAP1', 'score': 0.15}]
chr9	GH09I122777	122777170	122780168	0.6	[{'connected_gene': 'RABGAP1', 'score': 4.18}, {'connected_gene': 'GC09P122784', 'score': 0.44}, {'connected_gene': 'SKA2P1', 'score': 0.37}]
chr9	GH09I123039	123039204	123040435	0.2	[{'connected_gene': 'RABGAP1', 'score': 8.05}, {'connected_gene': 'GPR21', 'score': 0.44}, {'connected_gene': 'LOC100422501', 'score': 0.34}]
chr9	GH09I123033	123033295	123034085	1.08	[{'connected_gene': 'RABGAP1', 'score': 550.16}, {'connected_gene': 'GPR21', 'score': 0.77}, {'connected_gene': 'LOC100422501', 'score': 0.31}]
chr9	GH09I123042	123042821	123042870	0.4	[{'connected_gene': 'RABGAP1', 'score': 8.05}, {'connected_gene': 'GPR21', 'score': 0.39}, {'connected_gene': 'LOC100422501', 'score': 0.34}]
chr9	GH09I123106	123106967	123107076	0.27	[{'connected_gene': 'RABGAP1', 'score': 7.3}, {'connected_gene': 'OR1L3', 'score': 4.35}, {'connected_gene': 'OR1K1', 'score': 2.56}, {'connected_gene': 'GPR21', 'score': 1.68}, {'connected_gene': 'MIR600', 'score': 0.77}, {'connected_gene': 'LOC100422501', 'score': 0.26}]
chr9	GH09I122939	122939924	122943063	2.02	[{'connected_gene': 'RABGAP1', 'score': 556.97}, {'connected_gene': 'ZBTB6', 'score': 11.88}, {'connected_gene': 'RC3H2', 'score': 11.62}, {'connected_gene': 'ENSG00000261094', 'score': 0.77}, {'connected_gene': 'RNY1P15', 'score': 0.77}]
chr9	GH09I123070	123070772	123072090	0.31	[{'connected_gene': 'RABGAP1', 'score': 8.02}, {'connected_gene': 'LOC100422501', 'score': 0.44}, {'connected_gene': 'MIR600', 'score': 0.26}]
chr9	GH09I123078	123078275	123079073	0.31	[{'connected_gene': 'RABGAP1', 'score': 8.02}, {'connected_gene': 'LOC100422501', 'score': 0.37}, {'connected_gene': 'MIR600', 'score': 0.29}]
chr9	GH09I123071	123070067	123070762	0.2	[{'connected_gene': 'RABGAP1', 'score': 8.03}, {'connected_gene': 'LOC100422501', 'score': 0.44}, {'connected_gene': 'MIR600', 'score': 0.26}]
chr9	GH09I123046	123046542	123046671	0.4	[{'connected_gene': 'RABGAP1', 'score': 4.45}, {'connected_gene': 'LOC100422501', 'score': 0.37}, {'connected_gene': 'GPR21', 'score': 0.37}]
chr9	GH09I123051	123051729	123052734	0.2	[{'connected_gene': 'RABGAP1', 'score': 8.03}, {'connected_gene': 'LOC100422501', 'score': 0.39}, {'connected_gene': 'GPR21', 'score': 0.34}]
chr9	GH09I122092	122092268	122093911	2.25	[{'connected_gene': 'TTLL11', 'score': 562.32}, {'connected_gene': 'ENSG00000261534', 'score': 8.74}, {'connected_gene': 'RABGAP1', 'score': 4.88}, {'connected_gene': 'TTLL11-IT1', 'score': 0.13}]
chr9	GH09I123002	123002751	123004178	0.94	[{'connected_gene': 'ZBTB6', 'score': 12.15}, {'connected_gene': 'SNORD90', 'score': 10.94}, {'connected_gene': 'RABGAP1', 'score': 6.1}, {'connected_gene': 'GC09M123030', 'score': 0.31}, {'connected_gene': 'RNY1P15', 'score': 0.22}]
chr9	GH09I122991	122991062	122992024	0.77	[{'connected_gene': 'ZBTB6', 'score': 11.88}, {'connected_gene': 'ZBTB26', 'score': 11.39}, {'connected_gene': 'SNORD90', 'score': 11.25}, {'connected_gene': 'RABGAP1', 'score': 8.37}, {'connected_gene': 'GC09M123030', 'score': 0.28}, {'connected_gene': 'RNY1P15', 'score': 0.25}]
chr9	GH09I122911	122911920	122914200	2.04	[{'connected_gene': 'ZBTB6', 'score': 550.77}, {'connected_gene': 'RABGAP1', 'score': 5.98}, {'connected_gene': 'RC3H2', 'score': 0.44}]
chr9	GH09I122953	122953884	122954693	0.52	[{'connected_gene': 'ZBTB6', 'score': 12.17}, {'connected_gene': 'RNY1P15', 'score': 0.44}, {'connected_gene': 'RABGAP1', 'score': 0.39}, {'connected_gene': 'GC09M123030', 'score': 0.18}]
chr9	GH09I122944	122944847	122944906	0.87	[{'connected_gene': 'RNY1P15', 'score': 550.77}, {'connected_gene': 'RABGAP1', 'score': 550.77}, {'connected_gene': 'ZBTB6', 'score': 11.86}, {'connected_gene': 'RC3H2', 'score': 11.62}, {'connected_gene': 'ENSG00000233616', 'score': 5.13}]
chr9	GH09I122948	122947401	122947600	0.38	[{'connected_gene': 'RNY1P15', 'score': 550.77}, {'connected_gene': 'ZBTB6', 'score': 12.33}, {'connected_gene': 'SNORD90', 'score': 10.03}, {'connected_gene': 'ENSG00000233616', 'score': 5.13}, {'connected_gene': 'RABGAP1', 'score': 0.44}, {'connected_gene': 'GC09M123030', 'score': 0.18}]
chr9	GH09I122947	122947862	122948051	0.31	[{'connected_gene': 'RNY1P15', 'score': 550.77}, {'connected_gene': 'ZBTB6', 'score': 11.57}, {'connected_gene': 'SNORD90', 'score': 10.14}, {'connected_gene': 'RABGAP1', 'score': 0.44}, {'connected_gene': 'GC09M123030', 'score': 0.18}]
chr9	GH09I123063	123063262	123063411	0.2	[{'connected_gene': 'LOC100422501', 'score': 550.77}, {'connected_gene': 'MIR600', 'score': 10.84}, {'connected_gene': 'MIR600HG', 'score': 10.83}, {'connected_gene': 'SNORD90', 'score': 10.2}, {'connected_gene': 'RABGAP1', 'score': 0.13}]
chr9	GH09I123062	123062602	123062751	0.2	[{'connected_gene': 'LOC100422501', 'score': 550.77}, {'connected_gene': 'MIR600', 'score': 10.79}, {'connected_gene': 'MIR600HG', 'score': 10.77}, {'connected_gene': 'GPR21', 'score': 0.29}, {'connected_gene': 'RABGAP1', 'score': 0.13}]
chr9	GH09I123064	123064515	123065521	0.2	[{'connected_gene': 'LOC100422501', 'score': 550.77}, {'connected_gene': 'MIR600', 'score': 10.84}, {'connected_gene': 'MIR600HG', 'score': 10.83}, {'connected_gene': 'RABGAP1', 'score': 0.13}]
chr9	GH09I123072	123072406	123074847	0.86	[{'connected_gene': 'LOC100422501', 'score': 0.39}, {'connected_gene': 'MIR600', 'score': 0.28}, {'connected_gene': 'RABGAP1', 'score': 0.12}]
chr9	GH09I123081	123081922	123082071	0.57	[{'connected_gene': 'LOC100422501', 'score': 0.37}, {'connected_gene': 'MIR600', 'score': 0.31}, {'connected_gene': 'RABGAP1', 'score': 0.11}]
chr9	GH09I123068	123068662	123070022	0.83	[{'connected_gene': 'LOC100422501', 'score': 0.44}, {'connected_gene': 'MIR600', 'score': 0.26}, {'connected_gene': 'RABGAP1', 'score': 0.13}]
chr9	GH09I123058	123058430	123059269	0.54	[{'connected_gene': 'LOC100422501', 'score': 0.77}, {'connected_gene': 'GPR21', 'score': 0.31}, {'connected_gene': 'RABGAP1', 'score': 0.13}]
chr9	GH09I123052	123052817	123054481	0.38	[{'connected_gene': 'LOC100422501', 'score': 0.44}, {'connected_gene': 'GPR21', 'score': 0.34}, {'connected_gene': 'RABGAP1', 'score': 0.14}]
chr9	GH09I123108	123108492	123112901	0.85	[{'connected_gene': 'PIR57287', 'score': 550.77}, {'connected_gene': 'PIR45965', 'score': 550.77}, {'connected_gene': 'MIR600', 'score': 550.77}, {'connected_gene': 'GC09M123179', 'score': 550.77}, {'connected_gene': 'RABGAP1', 'score': 7.84}, {'connected_gene': 'GC09M123184', 'score': 0.77}, {'connected_gene': 'PIR33429', 'score': 0.77}, {'connected_gene': 'MIR600HG', 'score': 0.77}, {'connected_gene': 'LOC100422501', 'score': 0.25}, {'connected_gene': 'STRBP', 'score': 0.1}]
chr9	GH09I123099	123099701	123100931	0.74	[{'connected_gene': 'ENSG00000261094', 'score': 13.81}, {'connected_gene': 'MIR600', 'score': 0.39}, {'connected_gene': 'LOC100422501', 'score': 0.28}, {'connected_gene': 'RABGAP1', 'score': 0.1}]
chr9	GH09I122902	122902286	122906224	2.28	[{'connected_gene': 'GC09P122904', 'score': 550.77}, {'connected_gene': 'RC3H2', 'score': 550.77}, {'connected_gene': 'ZBTB26', 'score': 11.41}, {'connected_gene': 'SNORD90', 'score': 11.36}, {'connected_gene': 'MRRF', 'score': 9.71}, {'connected_gene': 'RABGAP1', 'score': 5.82}, {'connected_gene': 'MIR600HG', 'score': 4.33}, {'connected_gene': 'PIR42233', 'score': 0.39}]
chr9	GH09I123026	123026942	123027091	0.51	[{'connected_gene': 'GC09M123030', 'score': 0.77}, {'connected_gene': 'RNY1P15', 'score': 0.18}, {'connected_gene': 'RABGAP1', 'score': 0.17}]
chr9	GH09I123027	123027275	123029200	0.38	[{'connected_gene': 'GC09M123030', 'score': 550.77}, {'connected_gene': 'RPS25P8', 'score': 550.77}, {'connected_gene': 'GPR21', 'score': 550.77}, {'connected_gene': 'RABGAP1', 'score': 8.07}, {'connected_gene': 'RNY1P15', 'score': 0.18}]