PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
KDM5C	9	TSPYL2	4	affinity chromatography technology	Hein MY (2015)	1
CSNK1E	0	ZMYND8	5	two hybrid	Vinayagam A (2011)	1
INTS14	5	ZMYND8	5	affinity chromatography technology	Hein MY (2015)	1
INTS6	4	INTS14	5	affinity chromatography technology, affinity chromatography technology	Malovannaya A (2010), Hein MY (2015)	2
GATAD2B	15	CDK2AP1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	3
CHD4	22	GATAD2A	3	affinity chromatography technology, biochemical, affinity chromatography technology	Rahman S (2011), Havugimana PC (2012), Huttlin EL (2017)	3
ZMYND8	5	KRAS	1	affinity chromatography technology	Hein MY (2015)	1
INTS3	2	INTS5	3	affinity chromatography technology, affinity chromatography technology	Malovannaya A (2010), Malovannaya A (2010)	2
SOX2	4	RBBP7	1	affinity chromatography technology	Engelen E (2011)	1
BCL6	6	HDAC2	1	affinity chromatography technology	Bereshchenko OR (2002)	1
SMARCA4	19	HDAC2	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, genetic interference	Sif S (2001), Qiu Z (2008), Xu Z (2006), Pal S (2003), Battaglioli E (2002), Tando T (2010), Hang CT (2010), Shen JP (2017)	8
INTS5	3	INTS6	4	affinity chromatography technology, affinity chromatography technology	Malovannaya A (2010), Malovannaya A (2010)	2
MBD2	1	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Brackertz M (2002), Ng HH (1999), Ng HH (1999), Ng HH (1999), Zhang Y (1999), Zhang Y (1999), Feng Q (2001), Humphrey GW (2001), Humphrey GW (2001), Godmann M (2007), Bantscheff M (2011), Joshi P (2013), Fujita H (2003), Hein MY (2015), Huttlin EL (2017), Boldt K (2016)	16
INTS5	3	ZNF687	8	affinity chromatography technology	Malovannaya A (2010)	1
MTA2	1	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Zhang Y (1998), Wang Y (2009), Cui S (2011), Havugimana PC (2012), Quan J (2014), Wan C (2015)	8
USP7	14	BCL6	6	affinity chromatography technology	Hein MY (2015)	1
RBM8A	2	ZMYND8	5	affinity chromatography technology	Hein MY (2015)	1
CHD4	22	GATAD2B	15	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Rahman S (2011), Huttlin EL (2015), Huttlin EL (2017)	3
P4HA3	3	ZMYND8	5	affinity chromatography technology	Huttlin EL (2017)	1
HDAC1	4	MTA1	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Yao YL (2003), Yao YL (2003), Yao YL (2003), Mazumdar A (2001), Mazumdar A (2001), Yoo YG (2006), Liu XF (2004), Khaleque MA (2008), Terhune SS (2010), Xue Y (1998), Xue Y (1998), Cui S (2011), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hein MY (2015), Huttlin EL (2017), Millard CJ (2016), Millard CJ (2016)	21
ZMYND8	5	MTA3	3	affinity chromatography technology	Hein MY (2015)	1
INTS1	10	INTS6	4	affinity chromatography technology, affinity chromatography technology	Malovannaya A (2010), Malovannaya A (2010)	2
RERE	9	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Wang L (2006), Bantscheff M (2011)	2
SOX2	4	INTS14	5	affinity chromatography technology	Cox JL (2013)	1
BCL6	6	SMARCA4	19	affinity chromatography technology	Miles RR (2005)	1
FOXJ2	3	GATAD2B	15	affinity chromatography technology	Li X (2015)	1
CDK2AP1	1	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Spruijt CG (2010), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017), Hauri S (2016)	5
GATAD2A	3	ZNF592	6	affinity chromatography technology	Huttlin EL (2017)	1
ZMYND8	5	TSPYL1	3	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
ZMYND8	5	RPS27L	0	affinity chromatography technology	Hein MY (2015)	1
MBD3	4	GATAD2B	15	pull down, pull down, affinity chromatography technology, imaging technique, pull down, two hybrid, affinity chromatography technology, biochemical, two hybrid, affinity chromatography technology	Brackertz M (2002), Feng Q (2002), Feng Q (2002), Feng Q (2002), Gong Z (2006), Rolland T (2014), Huttlin EL (2015), Wan C (2015), Yu H (2011), Huttlin EL (2017)	10
CDK2AP1	1	MTA1	3	affinity chromatography technology	Hein MY (2015)	1
INTS1	10	ZMYND8	5	affinity chromatography technology	Malovannaya A (2010)	1
SOX2	4	INTS3	2	affinity chromatography technology	Cox JL (2013)	1
RBBP7	1	GATAD2B	15	pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Feng Q (2002), Feng Q (2002), Gong Z (2006), Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	6
MBD3	4	MBD2	1	two hybrid, pull down, two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology, two hybrid, two hybrid, pull down, affinity chromatography technology	Jiang CL (2004), Zhang Y (1999), Tatematsu KI (2000), Tatematsu KI (2000), Tatematsu KI (2000), Tatematsu KI (2000), Jin SG (2005), Jin SG (2005), Jin SG (2005), Feng Q (2001)	10
GATAD2B	15	GATAD2A	3	biochemical	Wan C (2015)	1
FOXJ2	3	KDM5C	9	affinity chromatography technology	Li X (2015)	1
MTA1	3	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Mazumdar A (2001), Mazumdar A (2001), Mazumdar A (2001), Li DQ (2010), Yan C (2003), Balasenthil S (2007), Ohshiro K (2010), Xue Y (1998), Xue Y (1998), Cui S (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	16
MBD2	1	HDAC2	1	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Brackertz M (2002), Ng HH (1999), Zhang Y (1999), Angrisano T (2006), Feng Q (2001), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	8
SOX2	4	USP7	14	affinity chromatography technology, affinity chromatography technology	Cox JL (2013), Cox JL (2013)	2
SOX2	4	HDAC2	1	affinity chromatography technology	Engelen E (2011)	1
ZNF408	0	ZNF687	8	affinity chromatography technology	Huttlin EL (2017)	1
MBD3	4	CHD4	22	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Sakai H (2002), Cui S (2011), Havugimana PC (2012), Quan J (2014)	4
ZNF408	0	ZNF592	6	affinity chromatography technology	Huttlin EL (2017)	1
RBBP7	1	GATAD2A	3	pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Gong Z (2006), Havugimana PC (2012), Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	5
CDK2AP1	1	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Spruijt CG (2010), Bantscheff M (2011), Joshi P (2013), Hein MY (2015)	4
SOX2	4	TSPYL1	3	affinity chromatography technology	Cox JL (2013)	1
CHD4	22	MTA3	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Kwintkiewicz J (2011), Kwintkiewicz J (2011), Bantscheff M (2011), Wan C (2015)	4
MBD3	4	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical	Sakai H (2002), Noh EJ (2009), Noh EJ (2009), Sun JM (2007), Adenuga D (2010), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	9
SOX2	4	CHD4	22	affinity chromatography technology, affinity chromatography technology	Engelen E (2011), Engelen E (2011)	2
RERE	9	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang L (2006), Joshi P (2013), Shen Y (2007), Hein MY (2015), Huttlin EL (2017)	5
ZMYND8	5	ZCCHC17	0	affinity chromatography technology	Hein MY (2015)	1
LLGL2	4	ZNF592	6	affinity chromatography technology	Huttlin EL (2017)	1
P4HA3	3	ZNF687	8	affinity chromatography technology	Huttlin EL (2017)	1
CDK2AP1	1	ESF1	2	affinity chromatography technology	Hein MY (2015)	1
SMARCA4	19	CHD4	22	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Shimono Y (2003), Shimono Y (2003), Shimono Y (2003), Mahajan MC (2005), Mahajan MC (2005), ONeill DW (2000)	6
HDAC1	4	HDAC2	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, imaging technique, affinity chromatography technology	Hakimi MA (2002), Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Fischle W (2002), Johnson CA (2002), Fischle W (2001), Fischer DD (2002), Fischer DD (2002), Ashburner BP (2001), Zhang Y (1999), Tong JK (1998), Tong JK (1998), Hassig CA (1998), Hassig CA (1998), Zhang Y (1997), van der Vlag J (1999), van der Vlag J (1999), Noh EJ (2009), Noh EJ (2009), Galasinski SC (2002), Galasinski SC (2002), Galasinski SC (2002), He S (2005), Humphrey GW (2001), Park JH (2004), Park JH (2004), Sekhavat A (2007), Zhang Y (1998), Zhang Y (1998), Adenuga D (2010), Xue Y (1998), Xue Y (1998), Martinez FP (2012), Martinez FP (2012), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Joshi P (2013), Schnur N (2007), Schnur N (2007), Oh YM (2009), Wan C (2015), Hein MY (2015), Chen TC (2014), Huttlin EL (2017)	48
SOX2	4	MTA1	3	affinity chromatography technology, affinity chromatography technology	Engelen E (2011), Cox JL (2013)	2
ZMYND8	5	TSPYL2	4	affinity chromatography technology	Hein MY (2015)	1
ZMYND8	5	HDAC2	1	affinity chromatography technology	Hein MY (2015)	1
KDM5C	9	ZMYND8	5	affinity chromatography technology	Hein MY (2015)	1
HDAC1	4	ZMYND8	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Hein MY (2015), Hein MY (2015)	3
ZBTB7A	3	HDAC1	4	affinity chromatography technology, affinity chromatography technology	Choi WI (2009), Yang Y (2015)	2
ZMYND8	5	MBD3	4	affinity chromatography technology	Hein MY (2015)	1
ZMYND8	5	GATAD2A	3	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
CSNK2A2	1	TSPYL2	4	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
MTA3	3	GATAD2B	15	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Bantscheff M (2011), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	4
RERE	9	ATN1	2	pull down, pull down, two hybrid, two hybrid	Yanagisawa H (2000), Yanagisawa H (2000), Lim J (2006), Lim J (2006)	4
INTS3	2	INTS14	5	affinity chromatography technology	Malovannaya A (2010)	1
ZMYND8	5	ZNF592	6	affinity chromatography technology	Hein MY (2015)	1
CDK2AP1	1	ZMYND8	5	affinity chromatography technology	Hein MY (2015)	1
HDAC2	1	GATAD2A	3	biochemical, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013)	3
INTS1	10	INTS3	2	affinity chromatography technology, affinity chromatography technology, biochemical	Malovannaya A (2010), Malovannaya A (2010), Wan C (2015)	3
E2F6	2	HDAC2	1	affinity chromatography technology	Hauri S (2016)	1
MTA3	3	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Bantscheff M (2011), Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	4
INTS1	10	INTS14	5	affinity chromatography technology, affinity chromatography technology	Malovannaya A (2010), Hein MY (2015)	2
MBD3	4	SMARCA4	19	pull down	Yildirim O (2011)	1
MTA3	3	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Fujita N (2003), Kwintkiewicz J (2011), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	8
KRAS	1	GATAD2A	3	genetic interference, affinity chromatography technology	Luo J (2009), Hein MY (2015)	2
LLGL2	4	ZNF687	8	affinity chromatography technology	Huttlin EL (2017)	1
CSNK1E	0	MTA2	1	affinity chromatography technology	Varjosalo M (2013)	1
TSPYL1	3	TSPYL2	4	affinity chromatography technology	Huttlin EL (2017)	1
BCL6	6	ZMYND8	5	affinity chromatography technology	Miles RR (2005)	1
SOX2	4	MBD3	4	affinity chromatography technology	Engelen E (2011)	1
DDX24	1	INTS6	4	biochemical	Wan C (2015)	1
MTA3	3	MBD3	4	affinity chromatography technology, biochemical	Fujita N (2003), Wan C (2015)	2
CSNK2A2	1	ZNF687	8	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Varjosalo M (2013), Huttlin EL (2015), Huttlin EL (2017)	3
KDM5C	9	HDAC1	4	affinity chromatography technology	Tahiliani M (2007)	1
SPOP	1	ZMYND8	5	two hybrid	Zhang P (2017)	1
INTS5	3	INTS14	5	affinity chromatography technology, affinity chromatography technology	Malovannaya A (2010), Hein MY (2015)	2
ZMYND8	5	MTA2	1	affinity chromatography technology	Hein MY (2015)	1
ZMYND8	5	GATAD2B	15	affinity chromatography technology	Hein MY (2015)	1
ZNF687	8	GATAD2A	3	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
SOX2	4	MBD2	1	affinity chromatography technology	Cox JL (2013)	1
MBD2	1	MTA2	1	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Zhang Y (1999), Feng Q (2001), Feng Q (2001), Humphrey GW (2001), Humphrey GW (2001), Wan C (2015)	6
MTA1	3	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Roche AE (2008), Huttlin EL (2015), Huttlin EL (2017), Millard CJ (2016), Hauri S (2016)	6
MBD3	4	RBBP7	1	pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (1999), Havugimana PC (2012), Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	5
SOX2	4	MTA3	3	affinity chromatography technology	Cox JL (2013)	1
CDK2AP1	1	MBD2	1	affinity chromatography technology, affinity chromatography technology	Spruijt CG (2010), Hein MY (2015)	2
KDM5C	9	MGA	9	affinity chromatography technology	Hein MY (2015)	1
MTA1	3	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Xue Y (1998), Cui S (2011), Cui S (2011), Chudnovsky Y (2014), Wan C (2015)	6
HDAC1	4	ZNF687	8	affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Hein MY (2015)	2
PBXIP1	1	ZMYND8	5	two hybrid	Wang J (2011)	1
CDK2AP1	1	CHD4	22	affinity chromatography technology	Hein MY (2015)	1
ZBTB7A	3	HDAC2	1	affinity chromatography technology	Choi WI (2009)	1
ZFYVE9	5	ZMYND8	5	two hybrid	Colland F (2004)	1
ZMYND8	5	CHERP	6	affinity chromatography technology	Hein MY (2015)	1
INTS6	4	ZNF687	8	affinity chromatography technology	Malovannaya A (2010)	1
CDK2AP1	1	ZNF687	8	affinity chromatography technology	Hein MY (2015)	1
RERE	9	ZMYND8	5	two hybrid	Lim J (2006)	1
ZMYND8	5	E2F6	2	affinity chromatography technology	Velasco G (2006)	1
MBD3	4	MTA1	3	pull down, affinity chromatography technology, biochemical	Yildirim O (2011), Cui S (2011), Wan C (2015)	3
INTS6	4	ZMYND8	5	affinity chromatography technology	Malovannaya A (2010)	1
ATN1	2	ZMYND8	5	two hybrid	Lim J (2006)	1
MBD2	1	GATAD2A	3	affinity chromatography technology, pull down, pull down, biochemical, affinity chromatography technology	Brackertz M (2002), Brackertz M (2002), Brackertz M (2006), Wan C (2015), Huttlin EL (2017)	5
ZMYND8	5	FHOD1	3	two hybrid	Westendorf JJ (2004)	1
MTA2	1	MTA1	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Cui S (2011), Wan C (2015)	4
CHD4	22	RBBP7	1	affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Havugimana PC (2012), Huttlin EL (2015), Quan J (2014), Huttlin EL (2017)	7
MTA3	3	CDK2AP1	1	affinity chromatography technology, affinity chromatography technology	Bantscheff M (2011), Hein MY (2015)	2
MTA3	3	GATAD2A	3	affinity chromatography technology, biochemical, affinity chromatography technology	Bantscheff M (2011), Wan C (2015), Huttlin EL (2017)	3
ZNF687	8	ZMYND8	5	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Hein MY (2015)	2
SOX2	4	GATAD2B	15	affinity chromatography technology	Engelen E (2011)	1
INTS5	3	ZNF592	6	affinity chromatography technology	Malovannaya A (2010)	1
HDAC1	4	BCL6	6	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	David G (1998), Deltour S (1999), Fujita N (2004), Fujita N (2004), Dhordain P (1998), Miles RR (2005)	6
SOX2	4	HDAC1	4	affinity chromatography technology	Engelen E (2011)	1
GATAD2B	15	MTA2	1	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Feng Q (2002), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
MBD2	1	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Feng Q (2001), Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	4
ZMYND8	5	MBD2	1	affinity chromatography technology	Hein MY (2015)	1
MTA3	3	MTA1	3	biochemical	Wan C (2015)	1
INTS3	2	ZNF592	6	affinity chromatography technology	Malovannaya A (2010)	1
SOX2	4	ZBTB7A	3	affinity chromatography technology	Cox JL (2013)	1
ZNF408	0	ZMYND8	5	affinity chromatography technology	Huttlin EL (2017)	1
GATAD2B	15	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Feng Q (2002), Bantscheff M (2011), Joshi P (2013), Huttlin EL (2015), Huttlin EL (2017)	5
ZMYND8	5	SMARCA4	19	affinity chromatography technology	Velasco G (2006)	1
INTS3	2	ZMYND8	5	affinity chromatography technology	Malovannaya A (2010)	1
HECW2	13	ZCCHC17	0	affinity chromatography technology	Lu L (2013)	1
ZNF687	8	DDX24	1	affinity chromatography technology	Hein MY (2015)	1
HDAC1	4	GATAD2A	3	pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Gong Z (2006), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	6
KDM5C	9	MBD2	1	affinity chromatography technology	Hein MY (2015)	1
MTA1	3	GATAD2B	15	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	4
HDAC1	4	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Yao YL (2003), Grozinger CM (1999), Tong JK (1998), Tong JK (1998), Humphrey GW (2001), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Terhune SS (2010), Polo SE (2010), Xue Y (1998), Xue Y (1998), Xue Y (1998), Kwintkiewicz J (2011), Cui S (2011), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Quan J (2014), Wan C (2015), Hein MY (2015), Weiss K (2016), Huttlin EL (2017)	28
SOX2	4	INTS1	10	affinity chromatography technology	Cox JL (2013)	1
MBD2	1	GATAD2B	15	pull down, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Brackertz M (2002), Feng Q (2002), Feng Q (2002), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	6
ZBTB7A	3	BCL6	6	affinity chromatography technology, two hybrid	Davies JM (1999), Davies JM (1999)	2
SOX2	4	ZNF687	8	affinity chromatography technology	Cox JL (2013)	1
MBD3	4	HDAC1	4	affinity chromatography technology, biochemical, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Sakai H (2002), Zhang Y (1999), Zhang Y (1999), Saito M (2002), Noh EJ (2009), Noh EJ (2009), Le Guezennec X (2006), Humphrey GW (2001), Sun JM (2007), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	16
SOX2	4	MTA2	1	affinity chromatography technology, affinity chromatography technology	Engelen E (2011), Engelen E (2011)	2
TSPYL1	3	DDX24	1	affinity chromatography technology	Huttlin EL (2017)	1
KCTD17	0	ZMYND8	5	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
MTA2	1	RBBP7	1	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Yao YL (2003), Zhang Y (1999), Feng Q (2001), Wang Y (2009), Fu J (2011), Havugimana PC (2012), Huttlin EL (2015), Huttlin EL (2017), Brasen C (2017), Brasen C (2017), Hauri S (2016)	11
SOX2	4	ZMYND8	5	affinity chromatography technology	Cox JL (2013)	1
ZMYND8	5	MGA	9	affinity chromatography technology	Hein MY (2015)	1
KDM5C	9	ZNF687	8	affinity chromatography technology	Hein MY (2015)	1
MTA3	3	MTA2	1	affinity chromatography technology, biochemical	Bantscheff M (2011), Wan C (2015)	2
ZNF687	8	TSPYL2	4	affinity chromatography technology	Hein MY (2015)	1
USP7	14	ZMYND8	5	two hybrid	Lim J (2006)	1
HDAC2	1	RBBP7	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Hakimi MA (2003), Adenuga D (2010), Xue Y (1998), Havugimana PC (2012), Bantscheff M (2011), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017), Hauri S (2016)	9
MBD3	4	MTA2	1	affinity chromatography technology, biochemical, pull down, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Sakai H (2002), Zhang Y (1999), Zhang Y (1999), Saito M (2002), Feng Q (2001), Wang Y (2009), Havugimana PC (2012), Wan C (2015)	8
GATAD2A	3	MTA1	3	biochemical, affinity chromatography technology	Wan C (2015), Huttlin EL (2017)	2
HDAC1	4	SMARCA4	19	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, genetic interference	Qiu Z (2008), Battaglioli E (2002), Hang CT (2010), DiRenzo J (2000)	4
KDM5C	9	HDAC2	1	affinity chromatography technology	Tahiliani M (2007)	1
ZMYND8	5	MTA1	3	affinity chromatography technology	Hein MY (2015)	1
HECW2	13	DDX24	1	affinity chromatography technology	Lu L (2013)	1
CDK2AP1	1	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Spruijt CG (2010), Bantscheff M (2011), Joshi P (2013), Hein MY (2015), Hein MY (2015), Huttlin EL (2017)	6
INTS6	4	ZNF592	6	affinity chromatography technology	Malovannaya A (2010)	1
SOX2	4	CSNK2A2	1	affinity chromatography technology	Cox JL (2013)	1
ZMYND8	5	PSMD5	0	affinity chromatography technology	Hein MY (2015)	1
FOXJ2	3	ZMYND8	5	affinity chromatography technology	Li X (2015)	1
CDK2AP1	1	MTA2	1	affinity chromatography technology	Hein MY (2015)	1
ZCCHC17	0	CSNK2A2	1	affinity chromatography technology	Huttlin EL (2017)	1
HDAC2	1	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical	Hakimi MA (2003), Schmidt DR (1999), Schmidt DR (1999), Tong JK (1998), Tong JK (1998), Tong JK (1998), ONeill DW (2000), Zhang Y (1998), Zhang Y (1998), Xue Y (1998), Xue Y (1998), Xue Y (1998), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	17
INTS3	2	ZNF687	8	affinity chromatography technology	Malovannaya A (2010)	1
ZMYND8	5	SUPT4H1	1	biochemical	Havugimana PC (2012)	1
E2F6	2	MGA	9	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016)	3
HDAC1	4	E2F6	2	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
KCTD17	0	ZNF687	8	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
MTA2	1	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Zhang Y (1999), Banach-Orlowska M (2009), Feng Q (2001), Humphrey GW (2001), Humphrey GW (2001), Wang Y (2009), Fu J (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	14
KDM5C	9	ZNF532	2	affinity chromatography technology	Hein MY (2015)	1
ZMYND8	5	ESF1	2	affinity chromatography technology	Hein MY (2015)	1
INTS1	10	ZNF687	8	affinity chromatography technology	Malovannaya A (2010)	1
BCL6	6	MTA3	3	affinity chromatography technology, affinity chromatography technology, pull down, pull down, imaging technique	Fujita N (2004), Fujita N (2004), Fujita N (2004), Fujita N (2004), Parekh S (2007)	5
INTS1	10	INTS5	3	affinity chromatography technology, affinity chromatography technology	Malovannaya A (2010), Malovannaya A (2010)	2
BCL6	6	MBD3	4	affinity chromatography technology, affinity chromatography technology	Fujita N (2004), Fujita N (2004)	2
HDAC1	4	RBBP7	1	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Ng HH (1999), Zhang Y (1999), Zhang Y (1997), Banach-Orlowska M (2009), Humphrey GW (2001), Zhang Y (1998), Zhang Y (1998), Xue Y (1998), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Yeh HH (2015), Yeh HH (2015), Huttlin EL (2017), Hauri S (2016)	19
SOX2	4	GATAD2A	3	affinity chromatography technology, affinity chromatography technology	Engelen E (2011), Cox JL (2013)	2
HDAC1	4	MGA	9	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
HDAC1	4	MTA2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Yao YL (2003), You A (2001), Zhang Y (1999), Zhang Y (1999), Yasui D (2002), Banach-Orlowska M (2009), Banach-Orlowska M (2009), Cui Y (2006), Pflum MK (2001), Feng Q (2001), Humphrey GW (2001), Humphrey GW (2001), Humphrey GW (2001), Zhang Y (1998), Terhune SS (2010), Opsahl JA (2010), Wang Y (2009), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Kristensen AR (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017), Boldt K (2016)	27
HDAC1	4	ZNF592	6	affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Hein MY (2015)	2
CDK2AP1	1	MBD3	4	affinity chromatography technology, affinity chromatography technology	Spruijt CG (2010), Hein MY (2015)	2
CSNK2A2	1	ZMYND8	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	3
CSNK2A2	1	ZNF592	6	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
MTA2	1	GATAD2A	3	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
KDM5C	9	ZNF592	6	affinity chromatography technology	Hein MY (2015)	1
P4HA3	3	ZNF592	6	affinity chromatography technology	Huttlin EL (2017)	1
MTA3	3	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Fujita N (2003), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	5
ZMYND8	5	DDX24	1	affinity chromatography technology	Hein MY (2015)	1
MBD3	4	GATAD2A	3	pull down, pull down, biochemical, biochemical, affinity chromatography technology	Brackertz M (2002), Gong Z (2006), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	5
INTS5	3	ZMYND8	5	affinity chromatography technology	Malovannaya A (2010)	1
MBD2	1	MTA1	3	biochemical	Wan C (2015)	1
ZMYND8	5	ZNF532	2	affinity chromatography technology	Hein MY (2015)	1
GATAD2B	15	HDAC1	4	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Feng Q (2002), Gong Z (2006), Bantscheff M (2011), Joshi P (2013), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	7
ZMYND8	5	CHD4	22	affinity chromatography technology	Hein MY (2015)	1
FOXJ2	3	HDAC2	1	affinity chromatography technology	Li X (2015)	1
HECW2	13	ZMYND8	5	affinity chromatography technology	Lu L (2013)	1
ZNF687	8	ZNF592	6	affinity chromatography technology	Hein MY (2015)	1
ZMYND8	5	RBBP7	1	affinity chromatography technology	Hein MY (2015)	1
CDK2AP1	1	GATAD2A	3	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
FOXJ2	3	CHD4	22	affinity chromatography technology	Li X (2015)	1
KDM5C	9	E2F6	2	affinity chromatography technology, affinity chromatography technology	Tahiliani M (2007), Hein MY (2015)	2
INTS3	2	INTS6	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Malovannaya A (2010), Malovannaya A (2010), Huttlin EL (2017)	3
MTA3	3	MBD2	1	affinity chromatography technology, biochemical	Bantscheff M (2011), Wan C (2015)	2
TSPYL1	3	ZNF687	8	affinity chromatography technology	Huttlin EL (2017)	1
LLGL2	4	ZMYND8	5	affinity chromatography technology	Huttlin EL (2017)	1
ZBTB7A	3	ZMYND8	5	two hybrid	Wang J (2011)	1