PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373290	[[71211228, 71211446], [71243446, 71243632], [71244896, 71244971], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71265996], [71266584, 71267425]]	[[71211350, 71211446], [71243446, 71243632], [71244896, 71244971], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71265996], [71266584, 71266734]]
ENST00000478112	[[71211232, 71211446], [71243446, 71243848]]	None
ENST00000475069	[[71243580, 71243632], [71244896, 71244971], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71266096]]	None
ENST00000452130	[[71243623, 71243632], [71244896, 71244971], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71265996], [71267309, 71267422]]	[[71243623, 71243632], [71244896, 71244971], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71265996], [71267309, 71267330]]
ENST00000490083	[[71254703, 71255006], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71265996], [71266584, 71266612]]	None
ENST00000486093	[[71254726, 71254792], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71265996], [71266584, 71266833]]	None
ENST00000459981	[[71254890, 71255179], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71265996], [71266584, 71266751]]	None
ENST00000470508	[[71265723, 71265996], [71266584, 71266985]]	None
NM_012339	[[71211225, 71211446], [71243446, 71243632], [71244896, 71244971], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71265996], [71266584, 71267423]]	[[71211350, 71211446], [71243446, 71243632], [71244896, 71244971], [71255349, 71255445], [71258035, 71258152], [71264193, 71264241], [71265879, 71265996], [71266584, 71266734]]

Promoter

Chrom	Start	End	Description
chr10	71211212	71211288	CAGE_peak_1_at_TSPAN15_5end
chr10	71254729	71254767	CAGE_peak_2_at_TSPAN15_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I069757	69757351	69758659	1	[{'connected_gene': 'DDX50', 'score': 49.52}, {'connected_gene': 'CEP57L1P1', 'score': 27.96}, {'connected_gene': 'PALD1', 'score': 18.73}, {'connected_gene': 'COL13A1', 'score': 11.17}, {'connected_gene': 'FAM241B', 'score': 10.3}, {'connected_gene': 'KIF1BP', 'score': 9.89}, {'connected_gene': 'TSPAN15', 'score': 4.72}, {'connected_gene': 'RPL5P26', 'score': 0.34}, {'connected_gene': 'GC10P069687', 'score': 0.19}]
chr10	GH10I069416	69416908	69416967	0.81	[{'connected_gene': 'TACR2', 'score': 550.77}, {'connected_gene': 'TSPAN15', 'score': 4.94}]
chr10	GH10I069417	69417346	69418858	0.97	[{'connected_gene': 'TACR2', 'score': 550.77}, {'connected_gene': 'TSPAN15', 'score': 24.06}]
chr10	GH10I069523	69523556	69523934	0.22	[{'connected_gene': 'TMEM256P1', 'score': 550.77}, {'connected_gene': 'TSPAN15', 'score': 11.03}, {'connected_gene': 'LOC105378345', 'score': 0.37}]
chr10	GH10I069407	69407665	69411425	1.96	[{'connected_gene': 'CCAR1', 'score': 23.43}, {'connected_gene': 'DDX50', 'score': 17.46}, {'connected_gene': 'TACR2', 'score': 12.12}, {'connected_gene': 'HK1', 'score': 11.82}, {'connected_gene': 'SAR1A', 'score': 11.33}, {'connected_gene': 'HKDC1', 'score': 10.95}, {'connected_gene': 'ENSG00000231748', 'score': 10.51}, {'connected_gene': 'RPL26P27', 'score': 9.79}, {'connected_gene': 'TSPAN15', 'score': 7.52}, {'connected_gene': 'SRGN', 'score': 3.17}, {'connected_gene': 'VPS26A', 'score': 1.62}, {'connected_gene': 'RPS15AP28', 'score': 0.14}]
chr10	GH10I069507	69506227	69506757	0.2	[{'connected_gene': 'NEUROG3', 'score': 11.24}, {'connected_gene': 'LOC101929021', 'score': 11.24}, {'connected_gene': 'FAM241B', 'score': 10.88}, {'connected_gene': 'TMEM256P1', 'score': 0.37}, {'connected_gene': 'GC10M069447', 'score': 0.28}, {'connected_gene': 'TSPAN15', 'score': 0.18}]
chr10	GH10I069398	69398398	69399423	0.43	[{'connected_gene': 'HK1', 'score': 11.3}, {'connected_gene': 'ENSG00000231748', 'score': 11.1}, {'connected_gene': 'HKDC1', 'score': 10.53}, {'connected_gene': 'TACR2', 'score': 6.19}, {'connected_gene': 'TSPAN15', 'score': 5.04}, {'connected_gene': 'RPS15AP28', 'score': 0.15}]
chr10	GH10I069405	69405743	69407606	0.69	[{'connected_gene': 'HK1', 'score': 11.3}, {'connected_gene': 'ENSG00000231748', 'score': 11.1}, {'connected_gene': 'HKDC1', 'score': 10.95}, {'connected_gene': 'TACR2', 'score': 10.3}, {'connected_gene': 'TSPAN15', 'score': 6.08}, {'connected_gene': 'RPS15AP28', 'score': 0.14}]
chr10	GH10I069403	69403186	69404477	0.66	[{'connected_gene': 'HK1', 'score': 11.29}, {'connected_gene': 'ENSG00000231748', 'score': 11.1}, {'connected_gene': 'HKDC1', 'score': 10.52}, {'connected_gene': 'TSPAN15', 'score': 6.09}, {'connected_gene': 'TACR2', 'score': 0.39}, {'connected_gene': 'RPS15AP28', 'score': 0.15}]
chr10	GH10I069388	69388979	69391103	0.82	[{'connected_gene': 'HK1', 'score': 11.27}, {'connected_gene': 'ENSG00000231748', 'score': 11.08}, {'connected_gene': 'TACR2', 'score': 6.58}, {'connected_gene': 'TSPAN15', 'score': 6.43}, {'connected_gene': 'RPS15AP28', 'score': 0.17}]
chr10	GH10I069392	69392036	69393086	1.1	[{'connected_gene': 'HK1', 'score': 11.21}, {'connected_gene': 'ENSG00000231748', 'score': 10.96}, {'connected_gene': 'TSPAN15', 'score': 5.38}, {'connected_gene': 'TACR2', 'score': 0.34}, {'connected_gene': 'RPS15AP28', 'score': 0.16}]
chr10	GH10I069393	69393890	69394904	0.38	[{'connected_gene': 'HK1', 'score': 11.21}, {'connected_gene': 'ENSG00000231748', 'score': 10.96}, {'connected_gene': 'TSPAN15', 'score': 5.07}, {'connected_gene': 'TACR2', 'score': 0.34}, {'connected_gene': 'RPS15AP28', 'score': 0.16}]
chr10	GH10I069421	69421985	69422214	1.07	[{'connected_gene': 'HK1', 'score': 10.22}, {'connected_gene': 'ENSG00000231748', 'score': 10.22}, {'connected_gene': 'TSPAN15', 'score': 0.77}, {'connected_gene': 'TACR2', 'score': 0.44}]
chr10	GH10I069462	69462851	69463138	0.63	[{'connected_gene': 'HK1', 'score': 1.3}, {'connected_gene': 'GC10M069447', 'score': 0.44}, {'connected_gene': 'ATP5MC1P7', 'score': 0.31}, {'connected_gene': 'TSPAN15', 'score': 0.28}]
chr10	GH10I069445	69445091	69454094	2.41	[{'connected_gene': 'TSPAN15', 'score': 593.72}, {'connected_gene': 'DDX50', 'score': 23.33}, {'connected_gene': 'CCAR1', 'score': 22.96}, {'connected_gene': 'DDX21', 'score': 11.13}, {'connected_gene': 'TYSND1', 'score': 10.92}, {'connected_gene': 'FAM241B', 'score': 10.56}, {'connected_gene': 'VPS26A', 'score': 9.9}, {'connected_gene': 'TACR2', 'score': 5.24}, {'connected_gene': 'AIFM2', 'score': 5.11}, {'connected_gene': 'ATP5MC1P7', 'score': 0.37}, {'connected_gene': 'GC10M069447', 'score': 0.37}]
chr10	GH10I069384	69384515	69386640	1.13	[{'connected_gene': 'TSPAN15', 'score': 5.31}, {'connected_gene': 'TACR2', 'score': 0.29}, {'connected_gene': 'RPS15AP28', 'score': 0.18}, {'connected_gene': 'HK1', 'score': 0.13}]
chr10	GH10I069419	69419170	69419892	0.4	[{'connected_gene': 'TSPAN15', 'score': 23.36}, {'connected_gene': 'TACR2', 'score': 0.77}]
chr10	GH10I069506	69506891	69508594	1.33	[{'connected_gene': 'TSPAN15', 'score': 13.27}, {'connected_gene': 'TMEM256P1', 'score': 0.37}, {'connected_gene': 'GC10M069447', 'score': 0.28}]
chr10	GH10I069470	69470607	69471545	0.38	[{'connected_gene': 'TSPAN15', 'score': 23.07}, {'connected_gene': 'GC10M069447', 'score': 0.77}, {'connected_gene': 'TMEM256P1', 'score': 0.23}]
chr10	GH10I069471	69471757	69473988	0.49	[{'connected_gene': 'TSPAN15', 'score': 21.46}, {'connected_gene': 'GC10M069447', 'score': 0.77}, {'connected_gene': 'TMEM256P1', 'score': 0.23}]
chr10	GH10I069501	69501900	69503649	0.43	[{'connected_gene': 'TSPAN15', 'score': 13.24}, {'connected_gene': 'NEUROG3', 'score': 11.23}, {'connected_gene': 'LOC101929021', 'score': 11.23}, {'connected_gene': 'FAM241B', 'score': 10.88}, {'connected_gene': 'TMEM256P1', 'score': 0.34}, {'connected_gene': 'GC10M069447', 'score': 0.29}]
chr10	GH10I069490	69490959	69500035	0.8	[{'connected_gene': 'TSPAN15', 'score': 40.19}, {'connected_gene': 'NEUROG3', 'score': 11.22}, {'connected_gene': 'LOC101929021', 'score': 11.22}, {'connected_gene': 'FAM241B', 'score': 10.92}, {'connected_gene': 'GC10M069447', 'score': 0.31}, {'connected_gene': 'TMEM256P1', 'score': 0.31}]
chr10	GH10I069489	69489372	69490452	0.31	[{'connected_gene': 'TSPAN15', 'score': 22.61}, {'connected_gene': 'FAM241B', 'score': 10.91}, {'connected_gene': 'GC10M069447', 'score': 0.34}, {'connected_gene': 'TMEM256P1', 'score': 0.29}]
chr10	GH10I069425	69425125	69427095	1.35	[{'connected_gene': 'TSPAN15', 'score': 572.32}, {'connected_gene': 'FAM241B', 'score': 10.67}, {'connected_gene': 'HK1', 'score': 10.12}, {'connected_gene': 'ENSG00000231748', 'score': 10.12}, {'connected_gene': 'TACR2', 'score': 5.28}, {'connected_gene': 'GC10M069434', 'score': 0.44}]
chr10	GH10I069423	69423656	69424876	1.15	[{'connected_gene': 'TSPAN15', 'score': 573.73}, {'connected_gene': 'FAM241B', 'score': 10.67}, {'connected_gene': 'HK1', 'score': 10.12}, {'connected_gene': 'ENSG00000231748', 'score': 10.12}, {'connected_gene': 'TACR2', 'score': 0.44}]
chr10	GH10I069477	69477602	69482653	1.03	[{'connected_gene': 'TSPAN15', 'score': 33.37}, {'connected_gene': 'FAM241B', 'score': 10.17}, {'connected_gene': 'HK1', 'score': 9.84}, {'connected_gene': 'ENSG00000231748', 'score': 9.84}, {'connected_gene': 'GC10M069447', 'score': 0.39}, {'connected_gene': 'TMEM256P1', 'score': 0.26}]
chr10	GH10I069482	69482844	69488546	0.49	[{'connected_gene': 'TSPAN15', 'score': 33.3}, {'connected_gene': 'FAM241B', 'score': 10.91}, {'connected_gene': 'HK1', 'score': 10.06}, {'connected_gene': 'ENSG00000231748', 'score': 10.06}, {'connected_gene': 'GC10M069447', 'score': 0.37}, {'connected_gene': 'TMEM256P1', 'score': 0.28}]
chr10	GH10I069436	69436669	69441022	1.2	[{'connected_gene': 'TSPAN15', 'score': 38.95}, {'connected_gene': 'FAM241B', 'score': 10.55}, {'connected_gene': 'HK1', 'score': 9.99}, {'connected_gene': 'ENSG00000231748', 'score': 9.98}, {'connected_gene': 'ATP5MC1P7', 'score': 0.44}, {'connected_gene': 'GC10M069447', 'score': 0.29}]
chr10	GH10I069441	69441317	69442688	0.2	[{'connected_gene': 'TSPAN15', 'score': 43.77}, {'connected_gene': 'FAM241B', 'score': 10.44}, {'connected_gene': 'ATP5MC1P7', 'score': 0.44}, {'connected_gene': 'GC10M069447', 'score': 0.31}]
chr10	GH10I069456	69456569	69462136	1.2	[{'connected_gene': 'TSPAN15', 'score': 35.82}, {'connected_gene': 'GC10M069447', 'score': 0.44}, {'connected_gene': 'ATP5MC1P7', 'score': 0.31}]
chr10	GH10I069463	69463301	69467610	1.02	[{'connected_gene': 'TSPAN15', 'score': 23.3}, {'connected_gene': 'GC10M069447', 'score': 0.77}, {'connected_gene': 'ATP5MC1P7', 'score': 0.29}]
chr10	GH10I069454	69454707	69455365	0.46	[{'connected_gene': 'TSPAN15', 'score': 38.39}, {'connected_gene': 'GC10M069447', 'score': 0.39}, {'connected_gene': 'ATP5MC1P7', 'score': 0.34}]
chr10	GH10I069427	69427225	69427434	0.82	[{'connected_gene': 'TSPAN15', 'score': 19.13}, {'connected_gene': 'GC10M069434', 'score': 0.44}]
chr10	GH10I069428	69428094	69428534	0.31	[{'connected_gene': 'TSPAN15', 'score': 19.0}, {'connected_gene': 'GC10M069434', 'score': 0.44}]
chr10	GH10I069434	69434405	69434848	0.43	[{'connected_gene': 'ATP5MC1P7', 'score': 550.77}, {'connected_gene': 'GC10M069434', 'score': 550.77}, {'connected_gene': 'TSPAN15', 'score': 0.44}, {'connected_gene': 'GC10M069447', 'score': 0.29}]
chr10	GH10I069475	69475961	69477157	0.2	[{'connected_gene': 'GC10M069447', 'score': 0.44}, {'connected_gene': 'TMEM256P1', 'score': 0.25}, {'connected_gene': 'TSPAN15', 'score': 0.23}]
chr10	GH10I069474	69474001	69475829	0.96	[{'connected_gene': 'GC10M069447', 'score': 0.44}, {'connected_gene': 'TSPAN15', 'score': 0.25}, {'connected_gene': 'TMEM256P1', 'score': 0.25}]
chr10	GH10I069467	69467801	69469434	1.16	[{'connected_gene': 'GC10M069447', 'score': 550.77}, {'connected_gene': 'TSPAN15', 'score': 23.95}, {'connected_gene': 'ATP5MC1P7', 'score': 0.28}]