PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368365	[[126068809, 126068872], [126072946, 126073025], [126073152, 126073236], [126075610, 126075692], [126080262, 126082415]]	[[126073001, 126073025], [126073152, 126073236], [126075610, 126075692], [126080262, 126080948]]
ENST00000368364	[[126070725, 126071005], [126072946, 126073025], [126073152, 126073236], [126075610, 126075692], [126080262, 126082415]]	[[126070922, 126071005], [126072946, 126073025], [126073152, 126073236], [126075610, 126075692], [126080262, 126080948]]
NM_012259	[[126070731, 126071005], [126072946, 126073025], [126073152, 126073236], [126075610, 126075692], [126080262, 126082415]]	[[126070922, 126071005], [126072946, 126073025], [126073152, 126073236], [126075610, 126075692], [126080262, 126080948]]

Promoter

Chrom	Start	End	Description
chr6	126070748	126070768	CAGE_peak_2_at_HEY2_5end
chr6	126070769	126070801	CAGE_peak_1_at_HEY2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I125759	125759215	125759344	0.89	[{'connected_gene': 'HDDC2', 'score': 11.87}, {'connected_gene': 'HINT3', 'score': 10.07}, {'connected_gene': 'LOC105377986', 'score': 0.39}, {'connected_gene': 'HEY2', 'score': 0.39}, {'connected_gene': 'TRE-CTC1-7', 'score': 0.34}]
chr6	GH06I125587	125587674	125588993	0.57	[{'connected_gene': 'HEY2', 'score': 5.31}, {'connected_gene': 'PIR39632', 'score': 0.77}, {'connected_gene': 'LINC02523', 'score': 0.17}, {'connected_gene': 'LOC105377986', 'score': 0.1}]
chr6	GH06I125769	125769027	125769608	0.6	[{'connected_gene': 'HEY2', 'score': 23.74}, {'connected_gene': 'RNF217', 'score': 11.6}, {'connected_gene': 'TRE-CTC1-7', 'score': 0.39}, {'connected_gene': 'LOC105377986', 'score': 0.34}]
chr6	GH06I125732	125732665	125735317	0.2	[{'connected_gene': 'HEY2', 'score': 0.39}, {'connected_gene': 'LOC105377986', 'score': 0.37}, {'connected_gene': 'LINC02523', 'score': 0.22}]
chr6	GH06I125743	125743346	125744770	0.49	[{'connected_gene': 'HEY2', 'score': 21.85}, {'connected_gene': 'LOC105377986', 'score': 6.66}, {'connected_gene': 'LINC02523', 'score': 0.2}]
chr6	GH06I125756	125756470	125757498	0.31	[{'connected_gene': 'HEY2', 'score': 23.91}, {'connected_gene': 'LOC105377986', 'score': 17.25}, {'connected_gene': 'HDDC2', 'score': 11.87}, {'connected_gene': 'HINT3', 'score': 10.07}, {'connected_gene': 'TRE-CTC1-7', 'score': 0.34}]
chr6	GH06I125752	125752951	125754220	0.63	[{'connected_gene': 'HEY2', 'score': 23.96}, {'connected_gene': 'LOC105377986', 'score': 17.9}, {'connected_gene': 'HDDC2', 'score': 11.64}, {'connected_gene': 'HINT3', 'score': 10.17}, {'connected_gene': 'TRE-CTC1-7', 'score': 0.31}]
chr6	GH06I125377	125377572	125378190	0.2	[{'connected_gene': 'HEY2', 'score': 9.91}, {'connected_gene': 'LOC105377986', 'score': 9.91}, {'connected_gene': 'LOC102723341', 'score': 0.2}, {'connected_gene': 'HDDC2', 'score': 0.18}]
chr6	GH06I125745	125745371	125750682	2.73	[{'connected_gene': 'HEY2', 'score': 574.51}, {'connected_gene': 'LOC105377986', 'score': 567.96}]
chr6	GH06I125795	125795274	125796435	0.46	[{'connected_gene': 'HEY2', 'score': 19.62}, {'connected_gene': 'NCOA7-AS1', 'score': 13.36}, {'connected_gene': 'HINT3', 'score': 11.13}, {'connected_gene': 'NCOA7', 'score': 0.39}]
chr6	GH06I125773	125773219	125774291	0.49	[{'connected_gene': 'HEY2', 'score': 23.37}, {'connected_gene': 'TRE-CTC1-7', 'score': 0.44}, {'connected_gene': 'LOC105377986', 'score': 0.34}]
chr6	GH06I125940	125940038	125949794	1.76	[{'connected_gene': 'RNF217', 'score': 14.33}, {'connected_gene': 'CENPW', 'score': 14.3}, {'connected_gene': 'NCOA7-AS1', 'score': 10.05}, {'connected_gene': 'LOC105377986', 'score': 9.71}, {'connected_gene': 'HEY2', 'score': 9.71}, {'connected_gene': 'NCOA7', 'score': 4.94}, {'connected_gene': 'TRMT11', 'score': 4.16}, {'connected_gene': 'PIR42096', 'score': 0.44}, {'connected_gene': 'HINT3', 'score': 0.39}]
chr6	GH06I125597	125597003	125599530	0.98	[{'connected_gene': 'RNF217', 'score': 11.6}, {'connected_gene': 'HEY2', 'score': 6.02}, {'connected_gene': 'PIR39632', 'score': 0.39}, {'connected_gene': 'LINC02523', 'score': 0.18}, {'connected_gene': 'LOC105377986', 'score': 0.1}]
chr6	GH06I125931	125931830	125932723	0.84	[{'connected_gene': 'HINT3', 'score': 13.4}, {'connected_gene': 'HEY2', 'score': 10.27}, {'connected_gene': 'NCOA7-AS1', 'score': 9.89}, {'connected_gene': 'PIR42096', 'score': 0.44}, {'connected_gene': 'PIR57980', 'score': 0.34}, {'connected_gene': 'NCOA7', 'score': 0.1}]
chr6	GH06I125828	125828493	125835999	1.18	[{'connected_gene': 'HINT3', 'score': 11.23}, {'connected_gene': 'HEY2', 'score': 10.5}, {'connected_gene': 'LOC102723341', 'score': 5.38}, {'connected_gene': 'NCOA7-AS1', 'score': 0.39}, {'connected_gene': 'RN7SKP56', 'score': 0.26}, {'connected_gene': 'NCOA7', 'score': 0.23}]
chr6	GH06I125922	125922495	125925388	0.94	[{'connected_gene': 'HINT3', 'score': 13.21}, {'connected_gene': 'NCOA7-AS1', 'score': 10.22}, {'connected_gene': 'HEY2', 'score': 7.13}, {'connected_gene': 'NCOA7', 'score': 4.51}, {'connected_gene': 'PIR57980', 'score': 0.39}, {'connected_gene': 'PIR42096', 'score': 0.37}]
chr6	GH06I125867	125867161	125870143	1.2	[{'connected_gene': 'HINT3', 'score': 11.87}, {'connected_gene': 'NCOA7-AS1', 'score': 11.12}, {'connected_gene': 'HEY2', 'score': 10.51}, {'connected_gene': 'RN7SKP56', 'score': 0.44}, {'connected_gene': 'NCOA7', 'score': 0.17}]
chr6	GH06I125884	125884028	125887923	0.49	[{'connected_gene': 'HINT3', 'score': 11.66}, {'connected_gene': 'NCOA7-AS1', 'score': 11.26}, {'connected_gene': 'HEY2', 'score': 10.73}, {'connected_gene': 'LOC105377986', 'score': 4.2}, {'connected_gene': 'RN7SKP56', 'score': 0.39}, {'connected_gene': 'PIR57980', 'score': 0.31}, {'connected_gene': 'NCOA7', 'score': 0.15}]
chr6	GH06I125788	125788754	125795040	2.5	[{'connected_gene': 'NCOA7', 'score': 553.8}, {'connected_gene': 'HEY2', 'score': 22.73}, {'connected_gene': 'RNF217', 'score': 14.33}, {'connected_gene': 'HINT3', 'score': 13.76}, {'connected_gene': 'NCOA7-AS1', 'score': 13.33}, {'connected_gene': 'LOC105377986', 'score': 5.08}, {'connected_gene': 'TRMT11', 'score': 1.47}]
chr6	GH06I125779	125779795	125783200	2.51	[{'connected_gene': 'NCOA7', 'score': 550.77}, {'connected_gene': 'TRE-CTC1-7', 'score': 550.77}, {'connected_gene': 'HEY2', 'score': 21.69}, {'connected_gene': 'CENPW', 'score': 20.72}, {'connected_gene': 'TRMT11', 'score': 12.61}, {'connected_gene': 'RNF217-AS1', 'score': 12.49}, {'connected_gene': 'RNF217', 'score': 9.77}, {'connected_gene': 'NCOA7-AS1', 'score': 0.28}]
chr6	GH06I125707	125707631	125708644	0.2	[{'connected_gene': 'LOC105377986', 'score': 14.19}, {'connected_gene': 'LINC02523', 'score': 0.29}, {'connected_gene': 'HEY2', 'score': 0.28}]
chr6	GH06I125754	125754409	125756324	0.2	[{'connected_gene': 'LOC105377986', 'score': 17.4}, {'connected_gene': 'HDDC2', 'score': 11.87}, {'connected_gene': 'HINT3', 'score': 10.17}, {'connected_gene': 'HEY2', 'score': 0.44}, {'connected_gene': 'TRE-CTC1-7', 'score': 0.34}]
chr6	GH06I125751	125751241	125752049	0.52	[{'connected_gene': 'LOC105377986', 'score': 17.93}, {'connected_gene': 'HDDC2', 'score': 11.15}, {'connected_gene': 'HINT3', 'score': 9.75}, {'connected_gene': 'HEY2', 'score': 0.77}, {'connected_gene': 'TRE-CTC1-7', 'score': 0.31}]
chr6	GH06I125741	125741416	125743277	0.75	[{'connected_gene': 'LOC105377986', 'score': 0.44}, {'connected_gene': 'HEY2', 'score': 0.44}, {'connected_gene': 'LINC02523', 'score': 0.2}]
chr6	GH06I125700	125700466	125701915	0.31	[{'connected_gene': 'LOC105377986', 'score': 20.73}, {'connected_gene': 'HEY2', 'score': 10.55}, {'connected_gene': 'LINC02523', 'score': 0.31}]
chr6	GH06I125362	125362562	125364301	1.12	[{'connected_gene': 'LOC105377986', 'score': 10.24}, {'connected_gene': 'HEY2', 'score': 10.24}, {'connected_gene': 'HDDC2', 'score': 0.21}, {'connected_gene': 'LOC102723341', 'score': 0.18}]
chr6	GH06I125844	125844988	125845800	0.99	[{'connected_gene': 'NCOA7-AS1', 'score': 11.25}, {'connected_gene': 'HINT3', 'score': 10.72}, {'connected_gene': 'HEY2', 'score': 9.69}, {'connected_gene': 'RN7SKP56', 'score': 0.31}, {'connected_gene': 'NCOA7', 'score': 0.21}]
chr6	GH06I125853	125853172	125855059	0.54	[{'connected_gene': 'NCOA7-AS1', 'score': 11.53}, {'connected_gene': 'HINT3', 'score': 11.5}, {'connected_gene': 'HEY2', 'score': 9.53}, {'connected_gene': 'LOC102723341', 'score': 5.49}, {'connected_gene': 'HDDC2', 'score': 4.5}, {'connected_gene': 'RN7SKP56', 'score': 0.34}, {'connected_gene': 'NCOA7', 'score': 0.19}]
chr6	GH06I125583	125583410	125587438	1.34	[{'connected_gene': 'PIR39632', 'score': 550.77}, {'connected_gene': 'RNF217', 'score': 10.28}, {'connected_gene': 'LOC105377986', 'score': 5.48}, {'connected_gene': 'HEY2', 'score': 5.34}, {'connected_gene': 'LINC02523', 'score': 0.17}]