PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000521425	[[71485676, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71519111, 71520013]]	[[71487166, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510419]]
ENST00000262213	[[71485676, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520604]]	[[71487166, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520434]]
ENST00000536748	[[71487086, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520371], [71520454, 71520608]]	[[71487166, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520341]]
ENST00000521049	[[71495940, 71496028], [71499129, 71499234], [71499340, 71499411], [71499751, 71499915], [71510129, 71510246], [71512253, 71512317], [71520311, 71520574]]	None
ENST00000520700	[[71506735, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71520497, 71520587]]	None
ENST00000518678	[[71510125, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520371], [71520454, 71520622]]	[[71510125, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520341]]
NM_001317805	[[71485452, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71519111, 71519926]]	[[71487166, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510419]]
NM_014294	[[71485452, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520694]]	[[71487166, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520434]]
NM_001317804	[[71485452, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520371], [71520454, 71520694]]	[[71487166, 71487240], [71495398, 71495559], [71495884, 71496028], [71499129, 71499234], [71499340, 71499411], [71506740, 71506825], [71508497, 71508556], [71510129, 71510246], [71510368, 71510490], [71512253, 71512317], [71520311, 71520341]]

Promoter

Chrom	Start	End	Description
chr8	71486726	71486739	CAGE_peak_18_at_TRAM1_5end
chr8	71519867	71519888	CAGE_peak_7_at_TRAM1_5end
chr8	71519889	71519918	CAGE_peak_5_at_TRAM1_5end
chr8	71520450	71520484	CAGE_peak_3_at_TRAM1_5end
chr8	71520485	71520511	CAGE_peak_4_at_TRAM1_5end
chr8	71520513	71520614	CAGE_peak_1_at_TRAM1_5end
chr8	71520642	71520658	CAGE_peak_2_at_TRAM1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I070147	70147586	70149314	1.33	[{'connected_gene': 'LACTB2', 'score': 11.17}, {'connected_gene': 'XKR9', 'score': 11.17}, {'connected_gene': 'TRAM1', 'score': 10.75}, {'connected_gene': 'LACTB2-AS1', 'score': 10.75}, {'connected_gene': 'H2AFZP2', 'score': 0.26}, {'connected_gene': 'BTF3P12', 'score': 0.13}, {'connected_gene': 'NCOA2', 'score': 0.07}]
chr8	GH08I070592	70592486	70592635	0.74	[{'connected_gene': 'LACTB2', 'score': 10.62}, {'connected_gene': 'XKR9', 'score': 10.62}, {'connected_gene': 'TRAM1', 'score': 0.37}, {'connected_gene': 'LOC105375890', 'score': 0.22}, {'connected_gene': 'GC08P070527', 'score': 0.2}]
chr8	GH08I070547	70547530	70547564	0.22	[{'connected_gene': 'LACTB2', 'score': 10.96}, {'connected_gene': 'XKR9', 'score': 10.96}, {'connected_gene': 'LOC105375890', 'score': 0.39}, {'connected_gene': 'GC08P070527', 'score': 0.34}, {'connected_gene': 'TRAM1', 'score': 0.21}]
chr8	GH08I070641	70641366	70642664	0.49	[{'connected_gene': 'XKR9', 'score': 18.98}, {'connected_gene': 'LACTB2', 'score': 11.4}, {'connected_gene': 'TRAM1', 'score': 11.39}, {'connected_gene': 'LACTB2-AS1', 'score': 11.39}, {'connected_gene': 'RN7SL19P', 'score': 0.39}]
chr8	GH08I070665	70665434	70670634	2.27	[{'connected_gene': 'XKR9', 'score': 621.48}, {'connected_gene': 'LACTB2', 'score': 557.91}, {'connected_gene': 'TRAM1', 'score': 10.75}, {'connected_gene': 'LACTB2-AS1', 'score': 10.75}, {'connected_gene': 'RN7SL19P', 'score': 0.39}]
chr8	GH08I070564	70564711	70565656	0.38	[{'connected_gene': 'XKR9', 'score': 12.24}, {'connected_gene': 'LACTB2', 'score': 6.4}, {'connected_gene': 'LOC105375890', 'score': 0.31}, {'connected_gene': 'GC08P070527', 'score': 0.28}, {'connected_gene': 'TRAM1', 'score': 0.26}]
chr8	GH08I070558	70558686	70559868	0.52	[{'connected_gene': 'XKR9', 'score': 56.9}, {'connected_gene': 'LACTB2', 'score': 16.61}, {'connected_gene': 'LOC105375890', 'score': 0.34}, {'connected_gene': 'GC08P070527', 'score': 0.29}, {'connected_gene': 'TRAM1', 'score': 0.25}]
chr8	GH08I070556	70556947	70558319	0.86	[{'connected_gene': 'XKR9', 'score': 16.53}, {'connected_gene': 'LACTB2', 'score': 16.34}, {'connected_gene': 'LOC105375890', 'score': 0.34}, {'connected_gene': 'GC08P070527', 'score': 0.29}, {'connected_gene': 'TRAM1', 'score': 0.23}]
chr8	GH08I070631	70631281	70631859	0.68	[{'connected_gene': 'XKR9', 'score': 25.22}, {'connected_gene': 'LACTB2-AS1', 'score': 15.3}, {'connected_gene': 'TRAM1', 'score': 11.0}, {'connected_gene': 'RN7SL19P', 'score': 0.34}, {'connected_gene': 'GC08P070527', 'score': 0.15}]
chr8	GH08I071052	71052074	71054771	0.6	[{'connected_gene': 'XKR9', 'score': 47.76}, {'connected_gene': 'TRAM1', 'score': 6.67}, {'connected_gene': 'LACTB2', 'score': 6.16}, {'connected_gene': 'LOC105375894', 'score': 0.15}, {'connected_gene': 'GC08M070811', 'score': 0.1}]
chr8	GH08I070662	70662556	70663652	0.49	[{'connected_gene': 'XKR9', 'score': 50.94}, {'connected_gene': 'TRAM1', 'score': 11.1}, {'connected_gene': 'LACTB2-AS1', 'score': 11.1}, {'connected_gene': 'LACTB2', 'score': 7.38}, {'connected_gene': 'RN7SL19P', 'score': 0.44}]
chr8	GH08I070605	70605201	70605800	0.31	[{'connected_gene': 'XKR9', 'score': 8.1}, {'connected_gene': 'TRAM1', 'score': 0.77}, {'connected_gene': 'LOC105375890', 'score': 0.2}, {'connected_gene': 'GC08P070527', 'score': 0.18}]
chr8	GH08I070540	70540321	70541600	0.79	[{'connected_gene': 'XKR9', 'score': 4.65}, {'connected_gene': 'LOC105375890', 'score': 0.44}, {'connected_gene': 'GC08P070527', 'score': 0.39}, {'connected_gene': 'TRAM1', 'score': 0.2}]
chr8	GH08I071058	71058706	71059900	0.83	[{'connected_gene': 'TRAM1', 'score': 5.99}, {'connected_gene': 'LACTB2', 'score': 4.54}, {'connected_gene': 'LOC105375894', 'score': 0.15}, {'connected_gene': 'GC08M070811', 'score': 0.1}, {'connected_gene': 'XKR9', 'score': 0.05}]
chr8	GH08I070606	70606011	70611519	2.51	[{'connected_gene': 'TRAM1', 'score': 556.81}, {'connected_gene': 'LACTB2-AS1', 'score': 555.46}, {'connected_gene': 'XKR9', 'score': 41.09}, {'connected_gene': 'LACTB2', 'score': 16.56}, {'connected_gene': 'RN7SL19P', 'score': 0.25}, {'connected_gene': 'GC08P070527', 'score': 0.18}]
chr8	GH08I070633	70633604	70633747	0.2	[{'connected_gene': 'TRAM1', 'score': 11.47}, {'connected_gene': 'LACTB2-AS1', 'score': 11.47}, {'connected_gene': 'RN7SL19P', 'score': 0.34}, {'connected_gene': 'GC08P070527', 'score': 0.14}]
chr8	GH08I071056	71055870	71056644	0.42	[{'connected_gene': 'TRAM1', 'score': 5.99}, {'connected_gene': 'LOC105375894', 'score': 0.15}, {'connected_gene': 'GC08M070811', 'score': 0.1}, {'connected_gene': 'XKR9', 'score': 0.05}]
chr8	GH08I071035	71035415	71036058	0.31	[{'connected_gene': 'TRAM1', 'score': 5.99}, {'connected_gene': 'LOC105375894', 'score': 0.13}, {'connected_gene': 'GC08M070811', 'score': 0.12}, {'connected_gene': 'XKR9', 'score': 0.05}]