PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000343813	[[6281252, 6285322], [6291961, 6292179], [6293533, 6293703], [6294945, 6295034], [6295776, 6296000]]	[[6285139, 6285322], [6291961, 6292179], [6293533, 6293703], [6294945, 6295034], [6295776, 6295971]]
ENST00000489498	[[6283550, 6285322], [6291961, 6292179], [6293533, 6293703], [6294464, 6294571], [6294945, 6295034], [6295776, 6296032]]	[[6294504, 6294571], [6294945, 6295034], [6295776, 6295971]]
ENST00000474756	[[6284658, 6285322], [6291961, 6292179], [6294945, 6295034], [6295776, 6296032]]	[[6292178, 6292179], [6294945, 6295034], [6295776, 6295971]]
ENST00000495791	[[6281957, 6282220], [6283497, 6283562]]	None
ENST00000362035	[[6294504, 6294571], [6294945, 6295034], [6295776, 6296000]]	[[6294504, 6294571], [6294945, 6295034], [6295776, 6295971]]
NM_012405	[[6281252, 6285322], [6291961, 6292179], [6293533, 6293703], [6294945, 6295034], [6295776, 6296044]]	[[6285139, 6285322], [6291961, 6292179], [6293533, 6293703], [6294945, 6295034], [6295776, 6295971]]

Promoter

Chrom	Start	End	Description
chr1	6295975	6296003	CAGE_peak_2_at_ICMT_5end
chr1	6296005	6296070	CAGE_peak_1_at_ICMT_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I006170	6170642	6172200	0.93	[{'connected_gene': 'CHD5', 'score': 21.31}, {'connected_gene': 'KCNAB2', 'score': 12.24}, {'connected_gene': 'RNF207', 'score': 9.96}, {'connected_gene': 'ICMT', 'score': 4.84}, {'connected_gene': 'PLEKHG5', 'score': 1.57}, {'connected_gene': 'LOC105376687', 'score': 0.28}]
chr1	GH01I006293	6293628	6295795	0.99	[{'connected_gene': 'ESPN', 'score': 17.97}, {'connected_gene': 'THAP3', 'score': 14.88}, {'connected_gene': 'NOL9', 'score': 12.33}, {'connected_gene': 'LINC00337', 'score': 11.71}, {'connected_gene': 'ICMT', 'score': 11.71}, {'connected_gene': 'NPHP4', 'score': 9.9}, {'connected_gene': 'ZBTB48', 'score': 3.67}, {'connected_gene': 'GPR153', 'score': 2.23}, {'connected_gene': 'ACOT7', 'score': 1.52}, {'connected_gene': 'GC01P006262', 'score': 0.29}, {'connected_gene': 'ENSG00000271746', 'score': 0.15}]
chr1	GH01I006412	6412832	6417164	1.12	[{'connected_gene': 'ESPN', 'score': 26.49}, {'connected_gene': 'RNF207', 'score': 19.47}, {'connected_gene': 'LINC00337', 'score': 11.71}, {'connected_gene': 'ICMT', 'score': 11.71}, {'connected_gene': 'HES3', 'score': 11.71}, {'connected_gene': 'PLEKHG5', 'score': 11.13}, {'connected_gene': 'LOC102724450', 'score': 10.81}, {'connected_gene': 'RPL22', 'score': 10.81}, {'connected_gene': 'CAMTA1', 'score': 10.81}, {'connected_gene': 'CHD5', 'score': 10.31}, {'connected_gene': 'ACOT7', 'score': 5.7}, {'connected_gene': 'HES2', 'score': 0.44}, {'connected_gene': 'GC01M006398', 'score': 0.37}]
chr1	GH01I006352	6352952	6355256	1.11	[{'connected_gene': 'ESPN', 'score': 18.88}, {'connected_gene': 'LINC00337', 'score': 11.9}, {'connected_gene': 'ICMT', 'score': 11.9}, {'connected_gene': 'ENSG00000271746', 'score': 0.28}, {'connected_gene': 'ACOT7', 'score': 0.26}, {'connected_gene': 'GC01P006262', 'score': 0.16}]
chr1	GH01I006356	6356122	6356694	0.43	[{'connected_gene': 'ESPN', 'score': 16.98}, {'connected_gene': 'LINC00337', 'score': 11.9}, {'connected_gene': 'ICMT', 'score': 11.9}, {'connected_gene': 'ENSG00000271746', 'score': 0.28}, {'connected_gene': 'ACOT7', 'score': 0.28}, {'connected_gene': 'GC01P006262', 'score': 0.15}]
chr1	GH01I006355	6355743	6356031	0.2	[{'connected_gene': 'ESPN', 'score': 17.62}, {'connected_gene': 'LINC00337', 'score': 11.9}, {'connected_gene': 'ICMT', 'score': 11.9}, {'connected_gene': 'ENSG00000271746', 'score': 0.28}, {'connected_gene': 'ACOT7', 'score': 0.28}, {'connected_gene': 'GC01P006262', 'score': 0.16}]
chr1	GH01I006208	6208607	6209838	1.34	[{'connected_gene': 'RPL22', 'score': 550.77}, {'connected_gene': 'RNF207', 'score': 12.8}, {'connected_gene': 'ICMT', 'score': 9.23}, {'connected_gene': 'LOC102724450', 'score': 0.77}]
chr1	GH01I006259	6259681	6264315	2.35	[{'connected_gene': 'GPR153', 'score': 572.89}, {'connected_gene': 'GC01P006262', 'score': 550.77}, {'connected_gene': 'ICMT', 'score': 18.67}, {'connected_gene': 'LINC00337', 'score': 12.7}, {'connected_gene': 'RPL22', 'score': 10.53}, {'connected_gene': 'RNF207', 'score': 10.52}, {'connected_gene': 'LOC102724450', 'score': 10.52}, {'connected_gene': 'CHD5', 'score': 10.52}, {'connected_gene': 'NOL9', 'score': 10.26}, {'connected_gene': 'THAP3', 'score': 1.99}, {'connected_gene': 'ACOT7', 'score': 0.12}, {'connected_gene': 'ENSG00000271746', 'score': 0.12}]
chr1	GH01I006238	6238037	6242725	1.24	[{'connected_gene': 'GPR153', 'score': 11.29}, {'connected_gene': 'LINC00337', 'score': 10.36}, {'connected_gene': 'ICMT', 'score': 5.27}, {'connected_gene': 'HES3', 'score': 0.77}]
chr1	GH01I006223	6223973	6225851	0.63	[{'connected_gene': 'ICMT', 'score': 13.04}, {'connected_gene': 'CHD5', 'score': 11.32}, {'connected_gene': 'RPL22', 'score': 0.37}]
chr1	GH01I006222	6222047	6223678	0.51	[{'connected_gene': 'ICMT', 'score': 20.16}, {'connected_gene': 'HES3', 'score': 12.22}, {'connected_gene': 'CHD5', 'score': 10.97}, {'connected_gene': 'LINC00337', 'score': 6.4}, {'connected_gene': 'RPL22', 'score': 0.39}]
chr1	GH01I006218	6218986	6221891	0.92	[{'connected_gene': 'ICMT', 'score': 20.17}, {'connected_gene': 'HES3', 'score': 12.22}, {'connected_gene': 'CHD5', 'score': 10.97}, {'connected_gene': 'LINC00337', 'score': 9.89}, {'connected_gene': 'RNF207', 'score': 0.39}, {'connected_gene': 'RPL22', 'score': 0.39}]
chr1	GH01I006247	6246781	6246990	1.06	[{'connected_gene': 'ICMT', 'score': 7.13}, {'connected_gene': 'HES3', 'score': 0.77}, {'connected_gene': 'GPR153', 'score': 0.39}]
chr1	GH01I007208	7208021	7208150	0.72	[{'connected_gene': 'ICMT', 'score': 4.51}, {'connected_gene': 'GC01M007197', 'score': 0.44}, {'connected_gene': 'GC01P007219', 'score': 0.39}, {'connected_gene': 'CAMTA1', 'score': 0.05}]
chr1	GH01I006233	6233275	6236706	2.02	[{'connected_gene': 'ICMT', 'score': 568.99}, {'connected_gene': 'LINC00337', 'score': 562.66}, {'connected_gene': 'ZBTB48', 'score': 21.74}, {'connected_gene': 'RPL22', 'score': 11.28}, {'connected_gene': 'THAP3', 'score': 11.15}, {'connected_gene': 'NOL9', 'score': 10.08}, {'connected_gene': 'GPR153', 'score': 7.82}, {'connected_gene': 'RNF207', 'score': 5.4}]
chr1	GH01I006357	6357360	6361604	1.89	[{'connected_gene': 'ACOT7', 'score': 554.72}, {'connected_gene': 'ESPN', 'score': 17.98}, {'connected_gene': 'LINC00337', 'score': 11.9}, {'connected_gene': 'ICMT', 'score': 11.9}, {'connected_gene': 'ENSG00000271746', 'score': 0.29}, {'connected_gene': 'GC01P006262', 'score': 0.15}]