PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000261497	[[20902909, 20906386], [20907514, 20907664], [20908240, 20908303], [20910208, 20910300], [20911182, 20911309], [20914463, 20914622], [20916142, 20916248], [20919064, 20919212], [20921254, 20921424], [20922396, 20922498], [20924425, 20924539], [20931854, 20931987], [20945977, 20946352]]	[[20906343, 20906386], [20907514, 20907664], [20908240, 20908303], [20910208, 20910300], [20911182, 20911309], [20914463, 20914622], [20916142, 20916248], [20919064, 20919212], [20921254, 20921424], [20922396, 20922498], [20924425, 20924539], [20931854, 20931987], [20945977, 20946148]]
ENST00000537526	[[20902909, 20906386], [20907514, 20907664], [20908240, 20908303], [20910208, 20910300], [20911182, 20911309], [20914463, 20914622], [20916142, 20916248], [20919064, 20919212], [20921254, 20921424], [20922396, 20922498], [20924425, 20924539], [20931854, 20931987], [20946938, 20947073]]	[[20906343, 20906386], [20907514, 20907664], [20908240, 20908303], [20910208, 20910300], [20911182, 20911309], [20914463, 20914622], [20916142, 20916248], [20919064, 20919212], [20921254, 20921424], [20922396, 20922498], [20924425, 20924539], [20931854, 20931987], [20946938, 20947073]]
ENST00000455117	[[20905687, 20906155], [20924518, 20924539], [20931854, 20931987], [20946633, 20946688]]	None
ENST00000579645	[[20906284, 20906386], [20907514, 20907664], [20908240, 20908303], [20910208, 20910300], [20911182, 20911309], [20914463, 20914622], [20916142, 20916248], [20919064, 20919212], [20921254, 20921424], [20922396, 20922498], [20924425, 20924539], [20931854, 20931987], [20946633, 20947073]]	[[20924527, 20924539], [20931854, 20931987], [20946633, 20947073]]
ENST00000463692	[[20907532, 20907664], [20908240, 20908463]]	None
ENST00000478443	[[20909820, 20910300], [20911182, 20911309], [20914463, 20914927]]	None
ENST00000582335	[[20914542, 20914622], [20921254, 20921424], [20922396, 20922452]]	[[20914542, 20914622], [20921254, 20921424], [20922396, 20922452]]
ENST00000577610	[[20916142, 20916248], [20919064, 20919212], [20921254, 20921424], [20921514, 20921654]]	None
ENST00000578446	[[20918963, 20919212], [20921254, 20921424], [20922396, 20922498], [20924425, 20924509]]	None
ENST00000476111	[[20921254, 20921424], [20922396, 20922498], [20924425, 20924539], [20931854, 20931987], [20945532, 20945586]]	[[20921254, 20921424], [20922396, 20922498], [20924425, 20924528]]
ENST00000584538	[[20921308, 20921424], [20922396, 20922498], [20924425, 20924539], [20931854, 20931987], [20946633, 20946722]]	[[20921308, 20921424], [20922396, 20922498], [20924425, 20924528]]
NM_015276	[[20902905, 20906386], [20907514, 20907664], [20908240, 20908303], [20910208, 20910300], [20911182, 20911309], [20914463, 20914622], [20916142, 20916248], [20919064, 20919212], [20921254, 20921424], [20922396, 20922498], [20924425, 20924539], [20931854, 20931987], [20945977, 20946352]]	[[20906343, 20906386], [20907514, 20907664], [20908240, 20908303], [20910208, 20910300], [20911182, 20911309], [20914463, 20914622], [20916142, 20916248], [20919064, 20919212], [20921254, 20921424], [20922396, 20922498], [20924425, 20924539], [20931854, 20931987], [20945977, 20946148]]

Promoter

Chrom	Start	End	Description
chr17	20904353	20904356	CAGE_peak_5_at_USP22_5end
chr17	20904385	20904440	CAGE_peak_6_at_USP22_5end
chr17	20904647	20904680	CAGE_peak_7_at_USP22_5end
chr17	20946229	20946255	CAGE_peak_4_at_USP22_5end
chr17	20946258	20946337	CAGE_peak_1_at_USP22_5end
chr17	20946338	20946369	CAGE_peak_2_at_USP22_5end
chr17	20946371	20946389	CAGE_peak_3_at_USP22_5end
chr17	20946710	20946737	CAGE_peak_8_at_USP22_5end
chr17	20946738	20946751	CAGE_peak_11_at_USP22_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I021192	21192328	21193448	0.63	[{'connected_gene': 'TMEM11', 'score': 13.25}, {'connected_gene': 'ENSG00000235530', 'score': 13.25}, {'connected_gene': 'DHRS7B', 'score': 6.59}, {'connected_gene': 'FAM106B', 'score': 5.42}, {'connected_gene': 'USP22', 'score': 3.96}, {'connected_gene': 'GC17M021160', 'score': 0.29}]
chr17	GH17I021131	21131227	21131500	0.77	[{'connected_gene': 'TMEM11', 'score': 11.81}, {'connected_gene': 'ENSG00000235530', 'score': 11.81}, {'connected_gene': 'USP22', 'score': 11.1}, {'connected_gene': 'NATD1', 'score': 4.38}, {'connected_gene': 'MAP2K3', 'score': 3.6}, {'connected_gene': 'DHRS7B', 'score': 0.44}, {'connected_gene': 'GC17M021160', 'score': 0.29}]
chr17	GH17I021051	21051401	21052988	1.05	[{'connected_gene': 'CCDC144NL-AS1', 'score': 29.94}, {'connected_gene': 'USP22', 'score': 16.09}, {'connected_gene': 'DHRS7B', 'score': 11.56}, {'connected_gene': 'LINC01563', 'score': 0.34}]
chr17	GH17I021010	21010179	21017607	0.38	[{'connected_gene': 'CCDC144NL-AS1', 'score': 31.25}, {'connected_gene': 'USP22', 'score': 29.95}, {'connected_gene': 'DHRS7B', 'score': 10.66}, {'connected_gene': 'PIR42715', 'score': 0.44}, {'connected_gene': 'PIR42920', 'score': 0.44}]
chr17	GH17I021031	21031876	21036400	1.18	[{'connected_gene': 'CCDC144NL-AS1', 'score': 30.21}, {'connected_gene': 'USP22', 'score': 14.96}, {'connected_gene': 'DHRS7B', 'score': 11.46}, {'connected_gene': 'PIR42715', 'score': 0.39}]
chr17	GH17I021006	21006644	21008904	0.38	[{'connected_gene': 'CCDC144NL-AS1', 'score': 31.82}, {'connected_gene': 'USP22', 'score': 27.72}, {'connected_gene': 'PIR42920', 'score': 0.77}, {'connected_gene': 'PIR42715', 'score': 0.39}]
chr17	GH17I021023	21023623	21024772	0.2	[{'connected_gene': 'CCDC144NL-AS1', 'score': 30.07}, {'connected_gene': 'USP22', 'score': 16.18}, {'connected_gene': 'PIR42715', 'score': 0.77}]
chr17	GH17I021053	21053768	21053777	0.46	[{'connected_gene': 'DHRS7B', 'score': 11.57}, {'connected_gene': 'USP22', 'score': 0.39}, {'connected_gene': 'LINC01563', 'score': 0.34}]
chr17	GH17I021028	21028442	21030225	0.63	[{'connected_gene': 'DHRS7B', 'score': 11.25}, {'connected_gene': 'PIR42715', 'score': 0.44}, {'connected_gene': 'USP22', 'score': 0.39}]
chr17	GH17I021037	21037401	21037600	0.74	[{'connected_gene': 'DHRS7B', 'score': 10.99}, {'connected_gene': 'USP22', 'score': 0.44}, {'connected_gene': 'PIR42715', 'score': 0.37}]
chr17	GH17I021114	21113261	21114246	0.31	[{'connected_gene': 'USP22', 'score': 11.89}, {'connected_gene': 'DHRS7B', 'score': 0.44}, {'connected_gene': 'LINC01563', 'score': 0.28}]
chr17	GH17I021113	21113001	21113200	0.31	[{'connected_gene': 'USP22', 'score': 11.89}, {'connected_gene': 'DHRS7B', 'score': 0.39}, {'connected_gene': 'LINC01563', 'score': 0.28}]
chr17	GH17I021039	21039525	21045015	2.59	[{'connected_gene': 'USP22', 'score': 583.63}, {'connected_gene': 'MEIS3P2', 'score': 61.44}, {'connected_gene': 'UPF3AP2', 'score': 50.32}, {'connected_gene': 'ENSG00000266050', 'score': 34.95}, {'connected_gene': 'CCDC144NL-AS1', 'score': 30.09}, {'connected_gene': 'DHRS7B', 'score': 11.0}, {'connected_gene': 'RPL21P120', 'score': 10.87}, {'connected_gene': 'C17orf51', 'score': 9.89}, {'connected_gene': 'USP32P3', 'score': 3.9}, {'connected_gene': 'PIR42715', 'score': 0.34}]
chr17	GH17I021072	21072591	21073356	0.38	[{'connected_gene': 'USP22', 'score': 20.55}, {'connected_gene': 'MEIS3P2', 'score': 4.85}, {'connected_gene': 'LINC01563', 'score': 0.77}]
chr17	GH17I020934	20934208	20937600	1.12	[{'connected_gene': 'USP22', 'score': 11.66}, {'connected_gene': 'AKAP10', 'score': 9.65}, {'connected_gene': 'ENSG00000266369', 'score': 7.52}, {'connected_gene': 'CCDC144NL-AS1', 'score': 6.35}, {'connected_gene': 'DHRS7B', 'score': 4.33}, {'connected_gene': 'ENSG00000265099', 'score': 0.77}, {'connected_gene': 'LOC105369205', 'score': 0.39}]
chr17	GH17I020197	20197340	20198733	0.38	[{'connected_gene': 'AKAP10', 'score': 26.42}, {'connected_gene': 'LGALS9B', 'score': 15.85}, {'connected_gene': 'NOS2P3', 'score': 13.39}, {'connected_gene': 'USP22', 'score': 11.54}, {'connected_gene': 'PIR41266', 'score': 0.44}, {'connected_gene': 'ENSG00000263494', 'score': 0.39}, {'connected_gene': 'SPECC1', 'score': 0.09}]
chr17	GH17I021075	21075101	21076348	0.2	[{'connected_gene': 'LINC01563', 'score': 561.16}, {'connected_gene': 'USP22', 'score': 12.18}, {'connected_gene': 'CCDC144NL-AS1', 'score': 8.07}, {'connected_gene': 'DHRS7B', 'score': 0.25}]
chr17	GH17I020978	20978625	20979778	0.69	[{'connected_gene': 'PIR46518', 'score': 550.77}, {'connected_gene': 'CCDC144NL-AS1', 'score': 18.3}, {'connected_gene': 'USP22', 'score': 10.37}, {'connected_gene': 'ENSG00000266009', 'score': 0.77}, {'connected_gene': 'ENSG00000264660', 'score': 0.37}, {'connected_gene': 'LOC339260', 'score': 0.26}, {'connected_gene': 'LOC105369205', 'score': 0.22}]
chr17	GH17I020997	20997908	20998297	0.88	[{'connected_gene': 'PIR46768', 'score': 550.77}, {'connected_gene': 'PIR39072', 'score': 550.77}, {'connected_gene': 'PIR63018', 'score': 550.77}, {'connected_gene': 'PIR61707', 'score': 550.77}, {'connected_gene': 'USP22', 'score': 13.12}, {'connected_gene': 'CCDC144NL-AS1', 'score': 8.09}, {'connected_gene': 'LOC105369205', 'score': 0.18}]
chr17	GH17I020992	20992588	20993662	1.03	[{'connected_gene': 'PIR33993', 'score': 550.77}, {'connected_gene': 'PIR44063', 'score': 550.77}, {'connected_gene': 'USP22', 'score': 10.66}, {'connected_gene': 'CCDC144NL-AS1', 'score': 10.42}, {'connected_gene': 'LOC105369205', 'score': 0.19}]
chr17	GH17I021002	21001528	21001677	0.51	[{'connected_gene': 'PIR46768', 'score': 550.77}, {'connected_gene': 'PIR47414', 'score': 550.77}, {'connected_gene': 'PIR40109', 'score': 550.77}, {'connected_gene': 'PIR34817', 'score': 550.77}, {'connected_gene': 'PIR40657', 'score': 550.77}, {'connected_gene': 'GC17M021058', 'score': 550.77}, {'connected_gene': 'PIR52999', 'score': 550.77}, {'connected_gene': 'PIR37561', 'score': 550.77}, {'connected_gene': 'PIR43745', 'score': 550.77}, {'connected_gene': 'PIR46192', 'score': 550.77}, {'connected_gene': 'USP22', 'score': 0.26}, {'connected_gene': 'CCDC144NL-AS1', 'score': 0.12}]
chr17	GH17I021001	21001188	21001337	0.4	[{'connected_gene': 'PIR46768', 'score': 550.77}, {'connected_gene': 'PIR47414', 'score': 550.77}, {'connected_gene': 'PIR40109', 'score': 550.77}, {'connected_gene': 'PIR34817', 'score': 550.77}, {'connected_gene': 'PIR40657', 'score': 550.77}, {'connected_gene': 'GC17M021058', 'score': 550.77}, {'connected_gene': 'PIR52999', 'score': 550.77}, {'connected_gene': 'PIR37561', 'score': 550.77}, {'connected_gene': 'PIR43745', 'score': 550.77}, {'connected_gene': 'PIR46192', 'score': 550.77}, {'connected_gene': 'USP22', 'score': 0.26}, {'connected_gene': 'CCDC144NL-AS1', 'score': 0.12}]
chr17	GH17I020998	20998868	20998957	0.51	[{'connected_gene': 'PIR46768', 'score': 550.77}, {'connected_gene': 'PIR39072', 'score': 550.77}, {'connected_gene': 'PIR63018', 'score': 550.77}, {'connected_gene': 'PIR61707', 'score': 550.77}, {'connected_gene': 'USP22', 'score': 6.17}, {'connected_gene': 'LOC105369205', 'score': 0.18}, {'connected_gene': 'CCDC144NL-AS1', 'score': 0.12}]
chr17	GH17I021003	21003929	21006397	0.56	[{'connected_gene': 'PIR42920', 'score': 550.77}, {'connected_gene': 'USP22', 'score': 17.13}, {'connected_gene': 'PIR42715', 'score': 0.37}]
chr17	GH17I021020	21020308	21020457	0.66	[{'connected_gene': 'PIR42715', 'score': 550.77}, {'connected_gene': 'USP22', 'score': 27.69}, {'connected_gene': 'PIR42920', 'score': 0.37}]