PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000561312	[[81239666, 81241239], [81244299, 81244637], [81271271, 81271818], [81274290, 81274523], [81281919, 81282169]]	[[81271559, 81271818], [81274290, 81274523], [81281919, 81282132]]
ENST00000422879	[[81240426, 81241239], [81244299, 81244637], [81281919, 81282160]]	[[81244433, 81244637], [81281919, 81282132]]
ENST00000560244	[[81240842, 81241239], [81244299, 81244637], [81262802, 81263000], [81271106, 81271154]]	None
ENST00000560189	[[81241016, 81241239], [81244299, 81244637], [81271106, 81271481]]	None
ENST00000559537	[[81244415, 81244637], [81245277, 81245377], [81281919, 81282136]]	[[81245347, 81245377], [81281919, 81282132]]
ENST00000261758	[[81268094, 81271818], [81274290, 81274523], [81281919, 81282219]]	[[81271559, 81271818], [81274290, 81274523], [81281919, 81282132]]

Promoter

Chrom	Start	End	Description
chr15	81282133	81282189	CAGE_peak_1_at_MESDC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I080870	80870036	80872146	0.38	[{'connected_gene': 'MIR549A', 'score': 12.12}, {'connected_gene': 'MESD', 'score': 10.43}, {'connected_gene': 'ARNT2', 'score': 9.67}, {'connected_gene': 'GC15M080848', 'score': 0.44}, {'connected_gene': 'GC15P080893', 'score': 0.34}, {'connected_gene': 'CEMIP', 'score': 0.16}]
chr15	GH15I080955	80955505	80956201	1.47	[{'connected_gene': 'TLNRD1', 'score': 3.69}, {'connected_gene': 'STARD5', 'score': 1.71}, {'connected_gene': 'ENSG00000259546', 'score': 0.44}, {'connected_gene': 'GC15M080956', 'score': 0.44}, {'connected_gene': 'MESD', 'score': 0.29}]
chr15	GH15I080984	80984192	80986099	1.27	[{'connected_gene': 'TLNRD1', 'score': 18.9}, {'connected_gene': 'MESD', 'score': 11.3}, {'connected_gene': 'STARD5', 'score': 4.49}, {'connected_gene': 'GC15M080956', 'score': 0.34}]
chr15	GH15I080999	80999331	81003514	2.22	[{'connected_gene': 'TLNRD1', 'score': 556.8}, {'connected_gene': 'GC15M081000', 'score': 550.77}, {'connected_gene': 'ENSG00000277782', 'score': 550.77}, {'connected_gene': 'PIR45812', 'score': 550.77}, {'connected_gene': 'MESD', 'score': 12.74}]
chr15	GH15I080970	80970140	80970329	0.65	[{'connected_gene': 'TLNRD1', 'score': 5.55}, {'connected_gene': 'GC15M080956', 'score': 0.44}, {'connected_gene': 'MESD', 'score': 0.37}]
chr15	GH15I080966	80966494	80966941	0.2	[{'connected_gene': 'TLNRD1', 'score': 11.1}, {'connected_gene': 'MESD', 'score': 10.29}, {'connected_gene': 'GC15M080956', 'score': 0.77}]
chr15	GH15I080967	80967167	80968851	0.46	[{'connected_gene': 'TLNRD1', 'score': 16.26}, {'connected_gene': 'MESD', 'score': 10.49}, {'connected_gene': 'GC15M080956', 'score': 0.77}]
chr15	GH15I080451	80451160	80451309	0.63	[{'connected_gene': 'CEMIP', 'score': 11.38}, {'connected_gene': 'ARNT2', 'score': 11.06}, {'connected_gene': 'MESD', 'score': 10.68}, {'connected_gene': 'GC15M080442', 'score': 0.44}, {'connected_gene': 'GC15P080469', 'score': 0.37}]
chr15	GH15I080454	80454582	80456489	0.95	[{'connected_gene': 'CEMIP', 'score': 11.45}, {'connected_gene': 'ARNT2', 'score': 11.05}, {'connected_gene': 'MESD', 'score': 10.68}, {'connected_gene': 'GC15M080442', 'score': 0.44}, {'connected_gene': 'GC15P080469', 'score': 0.39}]
chr15	GH15I081265	81265360	81265489	0.43	[{'connected_gene': 'TMC3', 'score': 10.78}, {'connected_gene': 'MESD', 'score': 10.35}, {'connected_gene': 'GC15P081268', 'score': 0.77}, {'connected_gene': 'GC15M081220', 'score': 0.26}, {'connected_gene': 'IL16', 'score': 0.14}]
chr15	GH15I080934	80934297	80935430	0.69	[{'connected_gene': 'MESD', 'score': 17.38}, {'connected_gene': 'ARNT2', 'score': 11.89}, {'connected_gene': 'TLNRD1', 'score': 5.99}, {'connected_gene': 'GC15M080926', 'score': 0.77}, {'connected_gene': 'GC15P080943', 'score': 0.44}, {'connected_gene': 'ENSG00000259546', 'score': 0.39}, {'connected_gene': 'CEMIP', 'score': 0.1}]
chr15	GH15I080928	80928674	80930343	0.72	[{'connected_gene': 'MESD', 'score': 7.35}, {'connected_gene': 'TLNRD1', 'score': 5.66}, {'connected_gene': 'GC15M080926', 'score': 0.77}, {'connected_gene': 'ENSG00000259546', 'score': 0.37}, {'connected_gene': 'ENSG00000259649', 'score': 0.37}, {'connected_gene': 'CEMIP', 'score': 0.1}]
chr15	GH15I080988	80988013	80992193	2.26	[{'connected_gene': 'MESD', 'score': 562.54}, {'connected_gene': 'TLNRD1', 'score': 6.46}, {'connected_gene': 'ENSG00000260619', 'score': 0.77}]
chr15	GH15I080936	80936400	80936549	0.2	[{'connected_gene': 'MESD', 'score': 10.95}, {'connected_gene': 'GC15M080926', 'score': 0.77}, {'connected_gene': 'GC15P080943', 'score': 0.44}, {'connected_gene': 'ENSG00000259546', 'score': 0.39}, {'connected_gene': 'CEMIP', 'score': 0.1}]
chr15	GH15I080944	80944719	80948887	0.46	[{'connected_gene': 'MESD', 'score': 9.09}, {'connected_gene': 'ENSG00000259546', 'score': 0.77}, {'connected_gene': 'GC15P080943', 'score': 0.77}, {'connected_gene': 'CEMIP', 'score': 0.1}]
chr15	GH15I081014	81014075	81018754	0.49	[{'connected_gene': 'MESD', 'score': 23.43}, {'connected_gene': 'GC15P081022', 'score': 0.44}, {'connected_gene': 'CFAP161', 'score': 0.44}]
chr15	GH15I080956	80956990	80958081	0.46	[{'connected_gene': 'MESD', 'score': 8.35}, {'connected_gene': 'ENSG00000259546', 'score': 0.44}, {'connected_gene': 'GC15M080956', 'score': 0.44}]
chr15	GH15I080987	80986616	80986967	0.2	[{'connected_gene': 'MESD', 'score': 10.83}, {'connected_gene': 'GC15M080956', 'score': 0.34}]
chr15	GH15I080977	80977140	80977943	0.76	[{'connected_gene': 'MESD', 'score': 10.86}, {'connected_gene': 'GC15M080956', 'score': 0.39}]
chr15	GH15I080986	80986140	80986289	0.49	[{'connected_gene': 'MESD', 'score': 0.77}, {'connected_gene': 'GC15M080956', 'score': 0.34}]
chr15	GH15I080978	80978800	80978949	0.73	[{'connected_gene': 'MESD', 'score': 0.39}, {'connected_gene': 'GC15M080956', 'score': 0.39}]
chr15	GH15I081022	81022601	81025399	1.6	[{'connected_gene': 'GC15P081022', 'score': 550.77}, {'connected_gene': 'TLNRD1', 'score': 46.11}, {'connected_gene': 'MESD', 'score': 11.99}, {'connected_gene': 'STARD5', 'score': 6.74}, {'connected_gene': 'GC15M081029', 'score': 0.44}, {'connected_gene': 'CFAP161', 'score': 0.37}]
chr15	GH15I081029	81029400	81030601	0.97	[{'connected_gene': 'GC15M081029', 'score': 550.77}, {'connected_gene': 'TLNRD1', 'score': 36.27}, {'connected_gene': 'MESD', 'score': 22.14}, {'connected_gene': 'STARD5', 'score': 6.66}, {'connected_gene': 'GC15P081022', 'score': 0.44}, {'connected_gene': 'CFAP161', 'score': 0.34}]
chr15	GH15I081071	81071180	81071329	0.2	[{'connected_gene': 'GC15P081073', 'score': 550.77}, {'connected_gene': 'MESD', 'score': 11.09}, {'connected_gene': 'TLNRD1', 'score': 10.75}, {'connected_gene': 'ENSG00000279834', 'score': 0.39}, {'connected_gene': 'CFAP161', 'score': 0.21}]
chr15	GH15I080943	80943360	80943509	0.94	[{'connected_gene': 'GC15P080943', 'score': 550.77}, {'connected_gene': 'MESD', 'score': 8.0}, {'connected_gene': 'ENSG00000259546', 'score': 0.44}, {'connected_gene': 'GC15M080926', 'score': 0.39}, {'connected_gene': 'CEMIP', 'score': 0.1}]
chr15	GH15I081268	81268501	81270048	0.46	[{'connected_gene': 'GC15P081268', 'score': 550.77}, {'connected_gene': 'MESD', 'score': 11.48}, {'connected_gene': 'IL16', 'score': 5.73}, {'connected_gene': 'PIR39910', 'score': 0.31}]
chr15	GH15I081266	81265601	81266748	1.07	[{'connected_gene': 'GC15P081268', 'score': 550.77}, {'connected_gene': 'MESD', 'score': 11.48}, {'connected_gene': 'TMC3', 'score': 10.78}, {'connected_gene': 'IL16', 'score': 6.28}, {'connected_gene': 'GC15M081220', 'score': 0.26}]
chr15	GH15I080954	80953794	80955189	0.81	[{'connected_gene': 'ENSG00000259546', 'score': 0.44}, {'connected_gene': 'GC15M080956', 'score': 0.44}, {'connected_gene': 'MESD', 'score': 0.28}]
chr15	GH15I080953	80953620	80953769	0.38	[{'connected_gene': 'ENSG00000259546', 'score': 0.77}, {'connected_gene': 'GC15M080956', 'score': 0.39}, {'connected_gene': 'MESD', 'score': 0.28}]
chr15	GH15I081887	81887577	81889889	1.01	[{'connected_gene': 'ENSG00000259649', 'score': 13.97}, {'connected_gene': 'SNHG21', 'score': 12.94}, {'connected_gene': 'MESD', 'score': 10.44}, {'connected_gene': 'WHAMM', 'score': 10.04}, {'connected_gene': 'GC15M081842', 'score': 0.39}, {'connected_gene': 'GC15P081908', 'score': 0.37}]