PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000235345	[[67465014, 67470131], [67474767, 67474850], [67486051, 67486130], [67487217, 67487285], [67507918, 67508011], [67512947, 67513050], [67515464, 67515533], [67516115, 67516187], [67517694, 67517762], [67518453, 67518540], [67518638, 67518672], [67519493, 67519782]]	[[67470022, 67470131], [67474767, 67474850], [67486051, 67486130], [67487217, 67487285], [67507918, 67508011], [67512947, 67513050], [67515464, 67515533], [67516115, 67516187], [67517694, 67517762], [67518453, 67518540], [67518638, 67518672], [67519493, 67519696]]
ENST00000506472	[[67473196, 67474130], [67474767, 67474850], [67486051, 67486130], [67487217, 67487285], [67507918, 67508011], [67512947, 67513050], [67515464, 67515533], [67516115, 67516187], [67517694, 67517762], [67518453, 67518540], [67518638, 67518730]]	[[67474069, 67474130], [67474767, 67474850], [67486051, 67486130], [67487217, 67487285], [67507918, 67508011], [67512947, 67513050], [67515464, 67515533], [67516115, 67516187], [67517694, 67517762], [67518453, 67518540]]
NM_015139	[[67465014, 67470131], [67474767, 67474850], [67486051, 67486130], [67487217, 67487285], [67507918, 67508011], [67512947, 67513050], [67515464, 67515533], [67516115, 67516187], [67517694, 67517762], [67518453, 67518540], [67518638, 67518672], [67519493, 67520080]]	[[67470022, 67470131], [67474767, 67474850], [67486051, 67486130], [67487217, 67487285], [67507918, 67508011], [67512947, 67513050], [67515464, 67515533], [67516115, 67516187], [67517694, 67517762], [67518453, 67518540], [67518638, 67518672], [67519493, 67519696]]

Promoter

Chrom	Start	End	Description
chr1	67519697	67519723	CAGE_peak_4_at_SLC35D1_5end
chr1	67519785	67519810	CAGE_peak_1_at_SLC35D1_5end
chr1	67519812	67519854	CAGE_peak_2_at_SLC35D1_5end
chr1	67520023	67520108	CAGE_peak_3_at_SLC35D1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I066939	66939899	66940262	0.2	[{'connected_gene': 'WDR78', 'score': 0.39}, {'connected_gene': 'MIER1', 'score': 0.37}, {'connected_gene': 'SLC35D1', 'score': 0.14}]
chr1	GH01I066943	66943242	66946214	0.94	[{'connected_gene': 'WDR78', 'score': 25.63}, {'connected_gene': 'MIER1', 'score': 5.37}, {'connected_gene': 'SLC35D1', 'score': 0.14}]
chr1	GH01I066980	66980601	66982566	0.84	[{'connected_gene': 'WDR78', 'score': 26.47}, {'connected_gene': 'MIER1', 'score': 9.92}, {'connected_gene': 'SLC35D1', 'score': 4.95}]
chr1	GH01I066923	66923362	66927648	2.28	[{'connected_gene': 'WDR78', 'score': 576.27}, {'connected_gene': 'MIER1', 'score': 571.17}, {'connected_gene': 'TCTEX1D1', 'score': 10.76}, {'connected_gene': 'SLC35D1', 'score': 0.13}]
chr1	GH01I067018	67018727	67020893	0.8	[{'connected_gene': 'WDR78', 'score': 25.21}, {'connected_gene': 'C1orf141', 'score': 10.93}, {'connected_gene': 'ENSG00000252433', 'score': 10.83}, {'connected_gene': 'MIER1', 'score': 9.91}, {'connected_gene': 'SLC35D1', 'score': 5.72}]
chr1	GH01I066954	66954547	66955841	0.82	[{'connected_gene': 'WDR78', 'score': 25.56}, {'connected_gene': 'SLC35D1', 'score': 4.73}, {'connected_gene': 'MIER1', 'score': 0.29}]
chr1	GH01I066996	66996118	66996307	0.76	[{'connected_gene': 'WDR78', 'score': 26.42}, {'connected_gene': 'ENSG00000252433', 'score': 10.22}, {'connected_gene': 'RNU6-586P', 'score': 9.7}, {'connected_gene': 'SLC35D1', 'score': 0.22}]
chr1	GH01I066937	66937201	66937600	0.52	[{'connected_gene': 'MIER1', 'score': 10.16}, {'connected_gene': 'WDR78', 'score': 0.39}, {'connected_gene': 'SLC35D1', 'score': 0.13}]
chr1	GH01I066938	66938401	66938800	0.49	[{'connected_gene': 'MIER1', 'score': 0.39}, {'connected_gene': 'WDR78', 'score': 0.39}, {'connected_gene': 'SLC35D1', 'score': 0.13}]
chr1	GH01I066936	66936401	66936600	0.67	[{'connected_gene': 'MIER1', 'score': 0.39}, {'connected_gene': 'WDR78', 'score': 0.39}, {'connected_gene': 'SLC35D1', 'score': 0.13}]
chr1	GH01I066951	66951638	66951787	0.2	[{'connected_gene': 'MIER1', 'score': 0.31}, {'connected_gene': 'WDR78', 'score': 0.31}, {'connected_gene': 'SLC35D1', 'score': 0.15}]
chr1	GH01I066929	66929009	66935932	2.26	[{'connected_gene': 'MIER1', 'score': 560.21}, {'connected_gene': 'WDR78', 'score': 25.7}, {'connected_gene': 'TCTEX1D1', 'score': 10.76}, {'connected_gene': 'SLC35D1', 'score': 5.0}]
chr1	GH01I066329	66329494	66338779	2.43	[{'connected_gene': 'PDE4B', 'score': 563.01}, {'connected_gene': 'MIER1', 'score': 9.7}, {'connected_gene': 'SLC35D1', 'score': 5.13}, {'connected_gene': 'GC01P066323', 'score': 0.39}, {'connected_gene': 'GC01P066373', 'score': 0.28}]
chr1	GH01I067052	67052136	67055027	2.05	[{'connected_gene': 'SLC35D1', 'score': 561.97}, {'connected_gene': 'WDR78', 'score': 4.26}]
chr1	GH01I067040	67040538	67040687	0.2	[{'connected_gene': 'SLC35D1', 'score': 0.39}, {'connected_gene': 'WDR78', 'score': 0.13}]
chr1	GH01I066940	66940409	66942859	0.52	[{'connected_gene': 'SLC35D1', 'score': 4.71}, {'connected_gene': 'MIER1', 'score': 0.37}, {'connected_gene': 'WDR78', 'score': 0.37}]
chr1	GH01I067162	67162439	67163687	0.8	[{'connected_gene': 'SLC35D1', 'score': 5.9}, {'connected_gene': 'GC01P067166', 'score': 0.77}, {'connected_gene': 'IL23R', 'score': 0.34}, {'connected_gene': 'C1orf141', 'score': 0.2}]
chr1	GH01I066433	66433718	66434550	0.2	[{'connected_gene': 'SLC35D1', 'score': 4.61}, {'connected_gene': 'GC01P066439', 'score': 0.44}, {'connected_gene': 'LOC105378776', 'score': 0.37}]
chr1	GH01I066401	66401783	66403646	1.4	[{'connected_gene': 'SLC35D1', 'score': 4.61}, {'connected_gene': 'LOC105378776', 'score': 0.39}, {'connected_gene': 'GC01P066373', 'score': 0.31}]
chr1	GH01I067060	67060065	67061815	1.01	[{'connected_gene': 'SLC35D1', 'score': 11.29}, {'connected_gene': 'GC01P067080', 'score': 0.37}]
chr1	GH01I067534	67534228	67536433	1.43	[{'connected_gene': 'GADD45A', 'score': 11.15}, {'connected_gene': 'RNU7-80P', 'score': 10.93}, {'connected_gene': 'GNG12-AS1', 'score': 9.67}, {'connected_gene': 'GNG12', 'score': 9.67}, {'connected_gene': 'SLC35D1', 'score': 2.07}, {'connected_gene': 'GC01P067542', 'score': 0.44}, {'connected_gene': 'LINC01702', 'score': 0.39}]
chr1	GH01I067137	67137017	67139957	0.62	[{'connected_gene': 'IL23R', 'score': 550.77}, {'connected_gene': 'C1orf141', 'score': 12.0}, {'connected_gene': 'ENSG00000252433', 'score': 10.84}, {'connected_gene': 'RNU6-586P', 'score': 10.79}, {'connected_gene': 'SLC35D1', 'score': 8.9}, {'connected_gene': 'ENSG00000275678', 'score': 0.39}]
chr1	GH01I067194	67194148	67195646	0.97	[{'connected_gene': 'RNU6-586P', 'score': 550.77}, {'connected_gene': 'C1orf141', 'score': 6.18}, {'connected_gene': 'IL23R', 'score': 5.89}, {'connected_gene': 'SLC35D1', 'score': 3.12}, {'connected_gene': 'WDR78', 'score': 2.66}, {'connected_gene': 'IL12RB2', 'score': 2.32}, {'connected_gene': 'MIER1', 'score': 2.0}, {'connected_gene': 'INSL5', 'score': 1.31}, {'connected_gene': 'GC01M067171', 'score': 0.34}]
chr1	GH01I067337	67336319	67336433	0.22	[{'connected_gene': 'RNU4ATAC4P', 'score': 10.36}, {'connected_gene': 'SERBP1', 'score': 10.33}, {'connected_gene': 'IL12RB2', 'score': 3.2}, {'connected_gene': 'MIER1', 'score': 2.67}, {'connected_gene': 'SLC35D1', 'score': 2.0}, {'connected_gene': 'IL23R', 'score': 1.39}, {'connected_gene': 'LOC105378779', 'score': 0.21}]
chr1	GH01I067028	67028538	67028678	0.23	[{'connected_gene': 'ENSG00000252433', 'score': 10.62}, {'connected_gene': 'SLC35D1', 'score': 5.95}, {'connected_gene': 'MIER1', 'score': 2.97}, {'connected_gene': 'WDR78', 'score': 0.15}]
chr1	GH01I067165	67165600	67167904	1.29	[{'connected_gene': 'GC01P067166', 'score': 550.77}, {'connected_gene': 'IL23R', 'score': 550.31}, {'connected_gene': 'C1orf141', 'score': 7.76}, {'connected_gene': 'SLC35D1', 'score': 5.88}, {'connected_gene': 'GC01M067171', 'score': 0.44}]
chr1	GH01I067001	67001903	67002392	0.38	[{'connected_gene': 'ENSG00000252433', 'score': 9.76}, {'connected_gene': 'RNU6-586P', 'score': 9.54}, {'connected_gene': 'SLC35D1', 'score': 0.23}, {'connected_gene': 'WDR78', 'score': 0.18}]