PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000262455	[[102741460, 102744995], [102747248, 102747351], [102768787, 102768929], [102769859, 102769971], [102778603, 102778720], [102780537, 102780595], [102782897, 102783013], [102784323, 102784508], [102814698, 102814814], [102820101, 102820141], [102822381, 102822454], [102861065, 102861322]]	[[102744893, 102744995], [102747248, 102747351], [102768787, 102768929], [102769859, 102769971], [102778603, 102778720], [102780537, 102780595], [102782897, 102783013], [102784323, 102784508], [102814698, 102814814], [102820101, 102820141], [102822381, 102822454], [102861065, 102861122]]
NM_015051	[[102741460, 102744995], [102747248, 102747351], [102768787, 102768929], [102769859, 102769971], [102778603, 102778720], [102780537, 102780595], [102782897, 102783013], [102784323, 102784508], [102814698, 102814814], [102820101, 102820141], [102822381, 102822454], [102861065, 102861334]]	[[102744893, 102744995], [102747248, 102747351], [102768787, 102768929], [102769859, 102769971], [102778603, 102778720], [102780537, 102780595], [102782897, 102783013], [102784323, 102784508], [102814698, 102814814], [102820101, 102820141], [102822381, 102822454], [102861065, 102861122]]

Promoter

Chrom	Start	End	Description
chr9	102861267	102861307	CAGE_peak_1_at_ERP44_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I099748	99748308	99748687	0.32	[{'connected_gene': 'NR4A3', 'score': 6.42}, {'connected_gene': 'ERP44', 'score': 1.9}, {'connected_gene': 'GC09M099818', 'score': 0.19}, {'connected_gene': 'LOC101928438', 'score': 0.19}, {'connected_gene': 'ENSG00000234860', 'score': 0.08}]
chr9	GH09I099659	99659799	99660825	1.29	[{'connected_gene': 'NR4A3', 'score': 6.32}, {'connected_gene': 'ERP44', 'score': 1.43}, {'connected_gene': 'ENSG00000234860', 'score': 0.13}, {'connected_gene': 'GC09M099818', 'score': 0.1}, {'connected_gene': 'LOC101928438', 'score': 0.1}]
chr9	GH09I099628	99628978	99629159	0.44	[{'connected_gene': 'NR4A3', 'score': 4.52}, {'connected_gene': 'ERP44', 'score': 1.32}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}, {'connected_gene': 'GC09M099818', 'score': 0.08}, {'connected_gene': 'LOC101928438', 'score': 0.08}]
chr9	GH09I099762	99762201	99763000	0.88	[{'connected_gene': 'NR4A3', 'score': 3.46}, {'connected_gene': 'ERP44', 'score': 1.96}, {'connected_gene': 'GC09M099818', 'score': 0.22}, {'connected_gene': 'LOC101928438', 'score': 0.22}, {'connected_gene': 'ENSG00000234860', 'score': 0.07}]
chr9	GH09I099750	99750630	99750837	0.22	[{'connected_gene': 'NR4A3', 'score': 2.45}, {'connected_gene': 'ERP44', 'score': 1.51}, {'connected_gene': 'GC09M099818', 'score': 0.2}, {'connected_gene': 'LOC101928438', 'score': 0.2}, {'connected_gene': 'ENSG00000234860', 'score': 0.08}]
chr9	GH09I099634	99634256	99634479	0.78	[{'connected_gene': 'NR4A3', 'score': 5.88}, {'connected_gene': 'ERP44', 'score': 1.45}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}, {'connected_gene': 'GC09M099818', 'score': 0.09}, {'connected_gene': 'LOC101928438', 'score': 0.09}]
chr9	GH09I099629	99629281	99629621	0.41	[{'connected_gene': 'NR4A3', 'score': 5.7}, {'connected_gene': 'ERP44', 'score': 1.23}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}, {'connected_gene': 'GC09M099818', 'score': 0.08}, {'connected_gene': 'LOC101928438', 'score': 0.08}]
chr9	GH09I099633	99633393	99633594	0.61	[{'connected_gene': 'NR4A3', 'score': 5.99}, {'connected_gene': 'ERP44', 'score': 1.76}, {'connected_gene': 'ENSG00000234860', 'score': 0.15}, {'connected_gene': 'GC09M099818', 'score': 0.09}, {'connected_gene': 'LOC101928438', 'score': 0.09}]
chr9	GH09I099683	99683026	99683248	0.29	[{'connected_gene': 'NR4A3', 'score': 6.18}, {'connected_gene': 'ERP44', 'score': 2.82}, {'connected_gene': 'GC09M099818', 'score': 0.12}, {'connected_gene': 'LOC101928438', 'score': 0.12}, {'connected_gene': 'ENSG00000234860', 'score': 0.1}]
chr9	GH09I099818	99818374	99825108	2.65	[{'connected_gene': 'NR4A3', 'score': 576.28}, {'connected_gene': 'GC09M099818', 'score': 550.77}, {'connected_gene': 'LOC101928438', 'score': 550.77}, {'connected_gene': 'MSANTD3', 'score': 10.27}, {'connected_gene': 'ERP44', 'score': 3.19}]
chr9	GH09I100082	100082444	100085718	1.04	[{'connected_gene': 'STX17', 'score': 17.57}, {'connected_gene': 'TEX10', 'score': 10.71}, {'connected_gene': 'INVS', 'score': 6.54}, {'connected_gene': 'ERP44', 'score': 0.39}, {'connected_gene': 'LOC105376176', 'score': 0.2}]
chr9	GH09I100093	100093979	100094128	0.49	[{'connected_gene': 'STX17', 'score': 17.56}, {'connected_gene': 'ERP44', 'score': 0.77}, {'connected_gene': 'LOC105376176', 'score': 0.18}]
chr9	GH09I100088	100088319	100088468	0.67	[{'connected_gene': 'STX17', 'score': 17.8}, {'connected_gene': 'ERP44', 'score': 0.39}, {'connected_gene': 'LOC105376176', 'score': 0.19}]
chr9	GH09I100028	100028219	100028388	0.75	[{'connected_gene': 'STX17', 'score': 17.09}, {'connected_gene': 'LOC105376176', 'score': 0.39}, {'connected_gene': 'ERP44', 'score': 0.19}]
chr9	GH09I100066	100066398	100067159	0.72	[{'connected_gene': 'INVS', 'score': 19.38}, {'connected_gene': 'STX17', 'score': 17.06}, {'connected_gene': 'ERP44', 'score': 11.94}, {'connected_gene': 'RN7SL75P', 'score': 11.92}, {'connected_gene': 'LOC105376176', 'score': 0.23}]
chr9	GH09I100213	100213379	100214434	0.63	[{'connected_gene': 'INVS', 'score': 17.93}, {'connected_gene': 'STX17', 'score': 16.5}, {'connected_gene': 'RN7SL75P', 'score': 10.88}, {'connected_gene': 'ERP44', 'score': 10.88}, {'connected_gene': 'NR4A3', 'score': 10.16}, {'connected_gene': 'LOC101928438', 'score': 10.16}, {'connected_gene': 'MSANTD3', 'score': 8.86}, {'connected_gene': 'MSANTD3-TMEFF1', 'score': 8.86}, {'connected_gene': 'TMEFF1', 'score': 8.85}, {'connected_gene': 'GC09P100176', 'score': 0.28}, {'connected_gene': 'GC09P100306', 'score': 0.16}]
chr9	GH09I100209	100209739	100210788	0.94	[{'connected_gene': 'INVS', 'score': 17.83}, {'connected_gene': 'STX17', 'score': 15.41}, {'connected_gene': 'RN7SL75P', 'score': 11.4}, {'connected_gene': 'ERP44', 'score': 11.4}, {'connected_gene': 'NR4A3', 'score': 10.33}, {'connected_gene': 'LOC101928438', 'score': 10.32}, {'connected_gene': 'MSANTD3', 'score': 9.82}, {'connected_gene': 'MSANTD3-TMEFF1', 'score': 9.81}, {'connected_gene': 'TMEFF1', 'score': 9.81}, {'connected_gene': 'GC09P100176', 'score': 0.28}, {'connected_gene': 'GC09P100306', 'score': 0.15}]
chr9	GH09I100211	100211266	100212839	0.2	[{'connected_gene': 'INVS', 'score': 17.93}, {'connected_gene': 'STX17', 'score': 16.26}, {'connected_gene': 'RN7SL75P', 'score': 10.88}, {'connected_gene': 'ERP44', 'score': 10.88}, {'connected_gene': 'NR4A3', 'score': 10.16}, {'connected_gene': 'LOC101928438', 'score': 10.16}, {'connected_gene': 'MSANTD3', 'score': 8.86}, {'connected_gene': 'MSANTD3-TMEFF1', 'score': 8.86}, {'connected_gene': 'TMEFF1', 'score': 8.85}, {'connected_gene': 'GC09P100176', 'score': 0.28}, {'connected_gene': 'GC09P100306', 'score': 0.16}]
chr9	GH09I100144	100144781	100146768	1.09	[{'connected_gene': 'INVS', 'score': 22.36}, {'connected_gene': 'STX17', 'score': 15.62}, {'connected_gene': 'RN7SL75P', 'score': 11.6}, {'connected_gene': 'ERP44', 'score': 11.58}, {'connected_gene': 'GC09P100140', 'score': 0.44}, {'connected_gene': 'NANOGP5', 'score': 0.31}]
chr9	GH09I100097	100097452	100100560	2.04	[{'connected_gene': 'INVS', 'score': 561.25}, {'connected_gene': 'ERP44', 'score': 550.77}, {'connected_gene': 'STX17', 'score': 17.37}, {'connected_gene': 'LOC105376176', 'score': 0.18}]
chr9	GH09I100064	100064395	100065994	0.46	[{'connected_gene': 'INVS', 'score': 18.75}, {'connected_gene': 'ERP44', 'score': 11.94}, {'connected_gene': 'RN7SL75P', 'score': 11.92}, {'connected_gene': 'LOC105376176', 'score': 0.25}]
chr9	GH09I099231	99231879	99232008	0.6	[{'connected_gene': 'INVS', 'score': 10.26}, {'connected_gene': 'ERP44', 'score': 10.26}, {'connected_gene': 'RN7SL75P', 'score': 10.26}, {'connected_gene': 'GC09M099229', 'score': 0.77}, {'connected_gene': 'GC09P099237', 'score': 0.44}]
chr9	GH09I100096	100096416	100096963	0.67	[{'connected_gene': 'ERP44', 'score': 0.77}, {'connected_gene': 'LOC105376176', 'score': 0.18}]
chr9	GH09I100087	100087892	100088144	0.54	[{'connected_gene': 'ERP44', 'score': 0.39}, {'connected_gene': 'LOC105376176', 'score': 0.19}]
chr9	GH09I100089	100087279	100087448	0.66	[{'connected_gene': 'ERP44', 'score': 0.39}, {'connected_gene': 'LOC105376176', 'score': 0.19}]
chr9	GH09I100131	100131359	100131448	0.2	[{'connected_gene': 'RN7SL75P', 'score': 12.55}, {'connected_gene': 'INVS', 'score': 12.53}, {'connected_gene': 'ERP44', 'score': 12.53}, {'connected_gene': 'GC09P100140', 'score': 0.44}, {'connected_gene': 'ENSG00000270995', 'score': 0.39}]
chr9	GH09I100216	100216279	100216468	0.62	[{'connected_gene': 'RN7SL75P', 'score': 11.49}, {'connected_gene': 'INVS', 'score': 11.48}, {'connected_gene': 'ERP44', 'score': 11.48}, {'connected_gene': 'GC09P100176', 'score': 0.26}, {'connected_gene': 'GC09P100306', 'score': 0.17}]
chr9	GH09I100214	100213217	100213311	0.2	[{'connected_gene': 'RN7SL75P', 'score': 10.88}, {'connected_gene': 'ERP44', 'score': 10.88}, {'connected_gene': 'INVS', 'score': 10.88}, {'connected_gene': 'NR4A3', 'score': 10.16}, {'connected_gene': 'LOC101928438', 'score': 10.16}, {'connected_gene': 'MSANTD3', 'score': 8.86}, {'connected_gene': 'MSANTD3-TMEFF1', 'score': 8.86}, {'connected_gene': 'TMEFF1', 'score': 8.85}, {'connected_gene': 'GC09P100176', 'score': 0.28}, {'connected_gene': 'GC09P100306', 'score': 0.16}]