PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000320354	[[86600856, 86602539]]	[[86600941, 86602447]]
NM_005251	[[86600856, 86602539]]	[[86600941, 86602447]]

Promoter

Chrom	Start	End	Description
chr16	86600426	86600441	CAGE_peak_1_at_FOXC2_5end
chr16	86600458	86600461	CAGE_peak_3_at_FOXC2_5end
chr16	86600870	86600921	CAGE_peak_2_at_FOXC2_5end
chr16	86601052	86601066	CAGE_peak_4_at_FOXC2_5end
chr16	86601088	86601105	CAGE_peak_5_at_FOXC2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I086386	86386278	86393705	1.46	[{'connected_gene': 'LINC00917', 'score': 11.52}, {'connected_gene': 'FOXF1', 'score': 1.97}, {'connected_gene': 'FOXC2', 'score': 1.69}, {'connected_gene': 'LOC401864', 'score': 0.25}]
chr16	GH16I086519	86519753	86520510	1.1	[{'connected_gene': 'MTHFSD', 'score': 23.78}, {'connected_gene': 'LINC00917', 'score': 10.53}, {'connected_gene': 'FOXC2', 'score': 9.9}, {'connected_gene': 'FOXF1', 'score': 5.47}, {'connected_gene': 'ENSG00000270020', 'score': 0.77}]
chr16	GH16I086950	86950801	86953861	1.63	[{'connected_gene': 'MTHFSD', 'score': 40.58}, {'connected_gene': 'ZCCHC14', 'score': 40.49}, {'connected_gene': 'LOC101928659', 'score': 38.25}, {'connected_gene': 'KLHDC4', 'score': 10.43}, {'connected_gene': 'LINC02181', 'score': 7.89}, {'connected_gene': 'FOXC2', 'score': 6.31}, {'connected_gene': 'FOXL1', 'score': 1.29}, {'connected_gene': 'GC16M086906', 'score': 0.25}, {'connected_gene': 'LOC105371393', 'score': 0.14}]
chr16	GH16I087062	87062401	87063200	0.96	[{'connected_gene': 'MTHFSD', 'score': 23.62}, {'connected_gene': 'FOXC2', 'score': 11.44}, {'connected_gene': 'ENSG00000269901', 'score': 11.1}, {'connected_gene': 'LINC02181', 'score': 6.59}, {'connected_gene': 'ENSG00000261363', 'score': 0.77}]
chr16	GH16I087263	87263575	87263724	0.57	[{'connected_gene': 'MTHFSD', 'score': 10.47}, {'connected_gene': 'FOXC2', 'score': 10.47}, {'connected_gene': 'C16orf95', 'score': 5.34}, {'connected_gene': 'RPL39P30', 'score': 0.77}, {'connected_gene': 'LOC101928682', 'score': 0.31}, {'connected_gene': 'ENSG00000261651', 'score': 0.25}]
chr16	GH16I087258	87258898	87258987	0.54	[{'connected_gene': 'MTHFSD', 'score': 10.64}, {'connected_gene': 'FOXC2', 'score': 10.64}, {'connected_gene': 'RPL39P30', 'score': 0.44}, {'connected_gene': 'ENSG00000261651', 'score': 0.26}, {'connected_gene': 'C16orf95', 'score': 0.22}]
chr16	GH16I086583	86583910	86587263	1.22	[{'connected_gene': 'MTHFSD', 'score': 12.06}, {'connected_gene': 'ENSG00000270020', 'score': 6.79}, {'connected_gene': 'FOXL1', 'score': 5.09}, {'connected_gene': 'FOXC2', 'score': 2.43}, {'connected_gene': 'GC16P086582', 'score': 0.77}, {'connected_gene': 'ENSG00000279142', 'score': 0.44}]
chr16	GH16I086589	86589337	86591395	1.2	[{'connected_gene': 'MTHFSD', 'score': 24.24}, {'connected_gene': 'ENSG00000270184', 'score': 15.08}, {'connected_gene': 'RN7SL381P', 'score': 13.4}, {'connected_gene': 'FOXC2', 'score': 12.11}, {'connected_gene': 'ENSG00000269901', 'score': 11.07}, {'connected_gene': 'RNU1-103P', 'score': 10.99}, {'connected_gene': 'ENSG00000270020', 'score': 7.95}, {'connected_gene': 'ENSG00000279142', 'score': 0.77}, {'connected_gene': 'GC16P086582', 'score': 0.44}]
chr16	GH16I087059	87059931	87061200	0.69	[{'connected_gene': 'FOXC2', 'score': 11.43}, {'connected_gene': 'MTHFSD', 'score': 11.42}, {'connected_gene': 'LINC02181', 'score': 10.46}, {'connected_gene': 'ENSG00000261363', 'score': 0.44}]
chr16	GH16I087052	87052458	87053904	1.08	[{'connected_gene': 'FOXC2', 'score': 11.56}, {'connected_gene': 'MTHFSD', 'score': 11.56}, {'connected_gene': 'LOC105371393', 'score': 0.77}, {'connected_gene': 'GC16M086906', 'score': 0.11}]
chr16	GH16I087289	87289050	87289293	0.2	[{'connected_gene': 'FOXC2', 'score': 11.23}, {'connected_gene': 'MTHFSD', 'score': 11.23}, {'connected_gene': 'LOC101928682', 'score': 0.77}, {'connected_gene': 'GC16P087283', 'score': 0.44}, {'connected_gene': 'C16orf95', 'score': 0.31}]
chr16	GH16I086563	86563131	86583299	2.71	[{'connected_gene': 'FOXC2', 'score': 554.49}, {'connected_gene': 'FOXL1', 'score': 550.77}, {'connected_gene': 'MTHFSD', 'score': 12.73}, {'connected_gene': 'FOXC2-AS1', 'score': 8.58}, {'connected_gene': 'ENSG00000270020', 'score': 8.32}, {'connected_gene': 'GC16P086582', 'score': 0.44}]
chr16	GH16I086923	86923934	86927141	1.3	[{'connected_gene': 'FOXC2', 'score': 2.02}, {'connected_gene': 'GC16M086906', 'score': 0.37}, {'connected_gene': 'LOC105371393', 'score': 0.12}]
chr16	GH16I086618	86618588	86620031	0.71	[{'connected_gene': 'FOXL1', 'score': 29.58}, {'connected_gene': 'FOXC2', 'score': 11.45}, {'connected_gene': 'MTHFSD', 'score': 11.42}, {'connected_gene': 'ENSG00000260387', 'score': 0.37}, {'connected_gene': 'ENSG00000279142', 'score': 0.34}]
chr16	GH16I086651	86651644	86654628	0.31	[{'connected_gene': 'FOXL1', 'score': 11.7}, {'connected_gene': 'FOXC2', 'score': 11.15}, {'connected_gene': 'MTHFSD', 'score': 11.13}, {'connected_gene': 'ENSG00000261161', 'score': 5.79}, {'connected_gene': 'ENSG00000274478', 'score': 0.26}]
chr16	GH16I086608	86608085	86611844	0.99	[{'connected_gene': 'FOXL1', 'score': 32.35}, {'connected_gene': 'FOXC2', 'score': 11.09}, {'connected_gene': 'MTHFSD', 'score': 11.06}, {'connected_gene': 'ENSG00000279142', 'score': 0.39}, {'connected_gene': 'ENSG00000260387', 'score': 0.31}]
chr16	GH16I086604	86604015	86605400	0.83	[{'connected_gene': 'FOXL1', 'score': 18.74}, {'connected_gene': 'FOXC2', 'score': 11.1}, {'connected_gene': 'MTHFSD', 'score': 11.07}, {'connected_gene': 'ENSG00000279142', 'score': 0.44}, {'connected_gene': 'ENSG00000260387', 'score': 0.29}]
chr16	GH16I086491	86491396	86518866	2.38	[{'connected_gene': 'FOXF1', 'score': 567.28}, {'connected_gene': 'MTHFSD', 'score': 28.21}, {'connected_gene': 'LOC101928659', 'score': 18.22}, {'connected_gene': 'LINC00917', 'score': 11.32}, {'connected_gene': 'FOXC2', 'score': 11.25}, {'connected_gene': 'ZCCHC14', 'score': 9.69}, {'connected_gene': 'FENDRR', 'score': 6.22}, {'connected_gene': 'ENSG00000270020', 'score': 5.89}, {'connected_gene': 'LOC401864', 'score': 0.2}]
chr16	GH16I086661	86661421	86666302	1.59	[{'connected_gene': 'LOC101928659', 'score': 18.22}, {'connected_gene': 'FOXC2', 'score': 16.86}, {'connected_gene': 'MTHFSD', 'score': 11.0}, {'connected_gene': 'FOXL1', 'score': 9.1}, {'connected_gene': 'LINC02188', 'score': 6.54}, {'connected_gene': 'ENSG00000261161', 'score': 5.98}, {'connected_gene': 'GINS2', 'score': 4.9}, {'connected_gene': 'ENSG00000274478', 'score': 0.29}]
chr16	GH16I086530	86530634	86531899	0.4	[{'connected_gene': 'GC16M086531', 'score': 550.77}, {'connected_gene': 'PIR36172', 'score': 550.77}, {'connected_gene': 'MTHFSD', 'score': 46.52}, {'connected_gene': 'ENSG00000270020', 'score': 27.83}, {'connected_gene': 'FOXC2', 'score': 11.5}, {'connected_gene': 'PIR44709', 'score': 0.77}]
chr16	GH16I086557	86557568	86558557	0.38	[{'connected_gene': 'PIR60279', 'score': 550.77}, {'connected_gene': 'MTHFSD', 'score': 21.95}, {'connected_gene': 'FOXL1', 'score': 6.46}, {'connected_gene': 'FOXC2', 'score': 0.44}]
chr16	GH16I086679	86679402	86682174	1.25	[{'connected_gene': 'ENSG00000270184', 'score': 16.68}, {'connected_gene': 'MTHFSD', 'score': 14.01}, {'connected_gene': 'RNU1-103P', 'score': 12.06}, {'connected_gene': 'FOXC2', 'score': 1.62}, {'connected_gene': 'ENSG00000274478', 'score': 0.37}, {'connected_gene': 'ENSG00000261161', 'score': 0.29}]
chr16	GH16I086592	86592934	86598483	0.6	[{'connected_gene': 'ENSG00000279142', 'score': 550.77}, {'connected_gene': 'FOXC2', 'score': 11.43}, {'connected_gene': 'MTHFSD', 'score': 11.38}, {'connected_gene': 'ENSG00000270020', 'score': 7.71}, {'connected_gene': 'FOXL1', 'score': 5.33}, {'connected_gene': 'ENSG00000260387', 'score': 0.26}]
chr16	GH16I086558	86558682	86559532	0.38	[{'connected_gene': 'PIR60279', 'score': 0.77}, {'connected_gene': 'FOXC2', 'score': 0.44}]