PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000593625	[[86609973, 86610060], [86612167, 86612672]]	[[86612329, 86612672]]
ENST00000320241	[[86612114, 86615303]]	[[86612329, 86613367]]
NM_005250	[[86612114, 86615304]]	[[86612329, 86613367]]

Promoter

Chrom	Start	End	Description
chr16	86612046	86612065	CAGE_peak_3_at_FOXL1_5end
chr16	86612092	86612099	CAGE_peak_6_at_FOXL1_5end
chr16	86612112	86612123	CAGE_peak_5_at_FOXL1_5end
chr16	86612149	86612161	CAGE_peak_2_at_FOXL1_5end
chr16	86612174	86612188	CAGE_peak_4_at_FOXL1_5end
chr16	86612320	86612394	CAGE_peak_1_at_FOXL1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I086950	86950801	86953861	1.63	[{'connected_gene': 'MTHFSD', 'score': 40.58}, {'connected_gene': 'ZCCHC14', 'score': 40.49}, {'connected_gene': 'LOC101928659', 'score': 38.25}, {'connected_gene': 'KLHDC4', 'score': 10.43}, {'connected_gene': 'LINC02181', 'score': 7.89}, {'connected_gene': 'FOXC2', 'score': 6.31}, {'connected_gene': 'FOXL1', 'score': 1.29}, {'connected_gene': 'GC16M086906', 'score': 0.25}, {'connected_gene': 'LOC105371393', 'score': 0.14}]
chr16	GH16I086583	86583910	86587263	1.22	[{'connected_gene': 'MTHFSD', 'score': 12.06}, {'connected_gene': 'ENSG00000270020', 'score': 6.79}, {'connected_gene': 'FOXL1', 'score': 5.09}, {'connected_gene': 'FOXC2', 'score': 2.43}, {'connected_gene': 'GC16P086582', 'score': 0.77}, {'connected_gene': 'ENSG00000279142', 'score': 0.44}]
chr16	GH16I086554	86554257	86556531	2.01	[{'connected_gene': 'MTHFSD', 'score': 574.54}, {'connected_gene': 'PIR60279', 'score': 550.77}, {'connected_gene': 'PIR58170', 'score': 550.77}, {'connected_gene': 'FLJ30679', 'score': 550.77}, {'connected_gene': 'ENSG00000270020', 'score': 11.04}, {'connected_gene': 'FOXL1', 'score': 7.64}]
chr16	GH16I085944	85944650	85949100	1.23	[{'connected_gene': 'IRF8', 'score': 11.94}, {'connected_gene': 'FOXL1', 'score': 5.32}, {'connected_gene': 'LINC02132', 'score': 0.39}, {'connected_gene': 'LOC105371388', 'score': 0.34}, {'connected_gene': 'PIR52537', 'score': 0.31}]
chr16	GH16I086563	86563131	86583299	2.71	[{'connected_gene': 'FOXC2', 'score': 554.49}, {'connected_gene': 'FOXL1', 'score': 550.77}, {'connected_gene': 'MTHFSD', 'score': 12.73}, {'connected_gene': 'FOXC2-AS1', 'score': 8.58}, {'connected_gene': 'ENSG00000270020', 'score': 8.32}, {'connected_gene': 'GC16P086582', 'score': 0.44}]
chr16	GH16I086618	86618588	86620031	0.71	[{'connected_gene': 'FOXL1', 'score': 29.58}, {'connected_gene': 'FOXC2', 'score': 11.45}, {'connected_gene': 'MTHFSD', 'score': 11.42}, {'connected_gene': 'ENSG00000260387', 'score': 0.37}, {'connected_gene': 'ENSG00000279142', 'score': 0.34}]
chr16	GH16I086651	86651644	86654628	0.31	[{'connected_gene': 'FOXL1', 'score': 11.7}, {'connected_gene': 'FOXC2', 'score': 11.15}, {'connected_gene': 'MTHFSD', 'score': 11.13}, {'connected_gene': 'ENSG00000261161', 'score': 5.79}, {'connected_gene': 'ENSG00000274478', 'score': 0.26}]
chr16	GH16I086608	86608085	86611844	0.99	[{'connected_gene': 'FOXL1', 'score': 32.35}, {'connected_gene': 'FOXC2', 'score': 11.09}, {'connected_gene': 'MTHFSD', 'score': 11.06}, {'connected_gene': 'ENSG00000279142', 'score': 0.39}, {'connected_gene': 'ENSG00000260387', 'score': 0.31}]
chr16	GH16I086604	86604015	86605400	0.83	[{'connected_gene': 'FOXL1', 'score': 18.74}, {'connected_gene': 'FOXC2', 'score': 11.1}, {'connected_gene': 'MTHFSD', 'score': 11.07}, {'connected_gene': 'ENSG00000279142', 'score': 0.44}, {'connected_gene': 'ENSG00000260387', 'score': 0.29}]
chr16	GH16I086669	86669444	86671072	0.38	[{'connected_gene': 'FOXL1', 'score': 7.5}, {'connected_gene': 'LINC02188', 'score': 6.44}, {'connected_gene': 'ENSG00000261161', 'score': 0.34}, {'connected_gene': 'ENSG00000274478', 'score': 0.31}]
chr16	GH16I086602	86602301	86603276	0.46	[{'connected_gene': 'FOXL1', 'score': 5.43}, {'connected_gene': 'ENSG00000279142', 'score': 0.44}, {'connected_gene': 'ENSG00000260387', 'score': 0.29}]
chr16	GH16I086675	86675604	86677124	0.72	[{'connected_gene': 'LINC02188', 'score': 5.38}, {'connected_gene': 'FOXL1', 'score': 5.25}, {'connected_gene': 'ENSG00000274478', 'score': 0.34}, {'connected_gene': 'ENSG00000261161', 'score': 0.29}]
chr16	GH16I086661	86661421	86666302	1.59	[{'connected_gene': 'LOC101928659', 'score': 18.22}, {'connected_gene': 'FOXC2', 'score': 16.86}, {'connected_gene': 'MTHFSD', 'score': 11.0}, {'connected_gene': 'FOXL1', 'score': 9.1}, {'connected_gene': 'LINC02188', 'score': 6.54}, {'connected_gene': 'ENSG00000261161', 'score': 5.98}, {'connected_gene': 'GINS2', 'score': 4.9}, {'connected_gene': 'ENSG00000274478', 'score': 0.29}]
chr16	GH16I086557	86557568	86558557	0.38	[{'connected_gene': 'PIR60279', 'score': 550.77}, {'connected_gene': 'MTHFSD', 'score': 21.95}, {'connected_gene': 'FOXL1', 'score': 6.46}, {'connected_gene': 'FOXC2', 'score': 0.44}]
chr16	GH16I086592	86592934	86598483	0.6	[{'connected_gene': 'ENSG00000279142', 'score': 550.77}, {'connected_gene': 'FOXC2', 'score': 11.43}, {'connected_gene': 'MTHFSD', 'score': 11.38}, {'connected_gene': 'ENSG00000270020', 'score': 7.71}, {'connected_gene': 'FOXL1', 'score': 5.33}, {'connected_gene': 'ENSG00000260387', 'score': 0.26}]