PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361640	[[19609051, 19609386], [19610489, 19610619], [19611179, 19611279], [19611511, 19611608], [19612381, 19612486], [19612678, 19612866], [19614989, 19615744]]	[[19609224, 19609386], [19610489, 19610619], [19611179, 19611279], [19611511, 19611608], [19612381, 19612486], [19612678, 19612866], [19614989, 19615203]]
NM_012067	[[19609056, 19609386], [19610489, 19610619], [19611179, 19611279], [19611511, 19611608], [19612381, 19612486], [19612678, 19612866], [19614989, 19615280]]	[[19609224, 19609386], [19610489, 19610619], [19611179, 19611279], [19611511, 19611608], [19612381, 19612486], [19612678, 19612866], [19614989, 19615203]]

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I019432	19432136	19471546	2.26	[{'connected_gene': 'CAPZB', 'score': 574.27}, {'connected_gene': 'EMC1', 'score': 14.45}, {'connected_gene': 'NBL1', 'score': 13.26}, {'connected_gene': 'RNU4-28P', 'score': 11.33}, {'connected_gene': 'HTR6', 'score': 10.82}, {'connected_gene': 'AKR7A2', 'score': 10.29}, {'connected_gene': 'OTUD3', 'score': 10.1}, {'connected_gene': 'AKR7A3', 'score': 8.85}, {'connected_gene': 'PQLC2', 'score': 6.11}, {'connected_gene': 'UBR4', 'score': 2.55}, {'connected_gene': 'PLA2G2E', 'score': 2.36}, {'connected_gene': 'PIR41915', 'score': 0.39}, {'connected_gene': 'RN7SL277P', 'score': 0.31}]
chr1	GH01I019481	19481596	19488476	2.22	[{'connected_gene': 'CAPZB', 'score': 550.77}, {'connected_gene': 'RNU4-28P', 'score': 12.22}, {'connected_gene': 'HTR6', 'score': 10.87}, {'connected_gene': 'NBL1', 'score': 10.53}, {'connected_gene': 'AKR7A3', 'score': 4.59}, {'connected_gene': 'PIR41915', 'score': 0.37}]
chr1	GH01I018711	18711167	18712860	0.49	[{'connected_gene': 'PAX7', 'score': 10.89}, {'connected_gene': 'AKR7A3', 'score': 4.65}, {'connected_gene': 'GC01P018698', 'score': 0.39}, {'connected_gene': 'GC01P018746', 'score': 0.29}]
chr1	GH01I019612	19612351	19614396	0.83	[{'connected_gene': 'NBL1', 'score': 6.23}, {'connected_gene': 'AKR7A3', 'score': 5.4}, {'connected_gene': 'AKR7A2', 'score': 4.92}, {'connected_gene': 'RPS14P3', 'score': 0.44}, {'connected_gene': 'MINOS1', 'score': 0.37}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.37}]
chr1	GH01I019394	19394906	19396688	0.66	[{'connected_gene': 'NBL1', 'score': 11.08}, {'connected_gene': 'RNU4-28P', 'score': 10.86}, {'connected_gene': 'AKR7A2', 'score': 9.6}, {'connected_gene': 'PQLC2', 'score': 6.84}, {'connected_gene': 'AKR7A3', 'score': 5.66}, {'connected_gene': 'RN7SL277P', 'score': 0.31}, {'connected_gene': 'GC01P019361', 'score': 0.29}, {'connected_gene': 'CAPZB', 'score': 0.17}]
chr1	GH01I019764	19764505	19766790	1.3	[{'connected_gene': 'TMCO4', 'score': 20.52}, {'connected_gene': 'AKR7A3', 'score': 11.34}, {'connected_gene': 'RNF186', 'score': 10.86}, {'connected_gene': 'ENSG00000235434', 'score': 10.86}, {'connected_gene': 'PLA2G2A', 'score': 1.33}, {'connected_gene': 'GC01P019759', 'score': 0.44}]
chr1	GH01I019271	19271855	19275219	1.32	[{'connected_gene': 'AKR7L', 'score': 550.77}, {'connected_gene': 'RNU6-1099P', 'score': 12.25}, {'connected_gene': 'AKR7A2', 'score': 12.24}, {'connected_gene': 'PQLC2', 'score': 12.24}, {'connected_gene': 'TAS1R2', 'score': 9.48}, {'connected_gene': 'MRTO4', 'score': 8.36}, {'connected_gene': 'AKR7A3', 'score': 6.98}, {'connected_gene': 'ENSG00000272084', 'score': 4.51}, {'connected_gene': 'GC01M019261', 'score': 0.44}]
chr1	GH01I019241	19241347	19241516	0.76	[{'connected_gene': 'EMC1', 'score': 21.72}, {'connected_gene': 'RNU6-1099P', 'score': 11.45}, {'connected_gene': 'AKR7A2', 'score': 11.43}, {'connected_gene': 'PQLC2', 'score': 11.43}, {'connected_gene': 'AKR7A3', 'score': 4.84}, {'connected_gene': 'PIR41702', 'score': 0.44}, {'connected_gene': 'MRTO4', 'score': 0.39}]
chr1	GH01I019344	19344231	19344693	0.91	[{'connected_gene': 'AKR7A3', 'score': 12.64}, {'connected_gene': 'HTR6', 'score': 10.8}, {'connected_gene': 'GC01M019346', 'score': 0.77}, {'connected_gene': 'PIR41831', 'score': 0.39}, {'connected_gene': 'CAPZB', 'score': 0.11}]
chr1	GH01I020124	20124359	20125516	0.77	[{'connected_gene': 'AKR7A3', 'score': 4.77}, {'connected_gene': 'PLA2G2D', 'score': 0.44}, {'connected_gene': 'PLA2G2F', 'score': 0.39}]
chr1	GH01I019287	19287493	19288598	1.01	[{'connected_gene': 'AKR7A3', 'score': 553.21}, {'connected_gene': 'EMC1', 'score': 14.69}, {'connected_gene': 'MRTO4', 'score': 5.19}, {'connected_gene': 'ALDH4A1', 'score': 1.94}, {'connected_gene': 'AKR7L', 'score': 0.39}]
chr1	GH01I019288	19288600	19289001	1.31	[{'connected_gene': 'AKR7A3', 'score': 550.77}, {'connected_gene': 'EMC1', 'score': 6.0}, {'connected_gene': 'AKR7L', 'score': 0.39}]
chr1	GH01I018965	18965218	18966523	1.06	[{'connected_gene': 'AKR7A3', 'score': 8.7}, {'connected_gene': 'IFFO2', 'score': 7.39}, {'connected_gene': 'GC01P019006', 'score': 0.26}]
chr1	GH01I020248	20248612	20252192	0.78	[{'connected_gene': 'AKR7A3', 'score': 6.2}, {'connected_gene': 'LINC01757', 'score': 0.44}, {'connected_gene': 'LOC105376828', 'score': 0.34}]
chr1	GH01I020232	20232708	20232877	0.69	[{'connected_gene': 'AKR7A3', 'score': 5.24}, {'connected_gene': 'LINC01757', 'score': 0.39}, {'connected_gene': 'LOC105376826', 'score': 0.37}]
chr1	GH01I019567	19567207	19567356	0.2	[{'connected_gene': 'AKR7A3', 'score': 7.0}, {'connected_gene': 'GC01P019599', 'score': 0.31}, {'connected_gene': 'LOC105376817', 'score': 0.28}]
chr1	GH01I018946	18946715	18957645	2.77	[{'connected_gene': 'IFFO2', 'score': 571.92}, {'connected_gene': 'EMC1', 'score': 8.36}, {'connected_gene': 'ALDH4A1', 'score': 6.65}, {'connected_gene': 'AKR7A3', 'score': 6.15}, {'connected_gene': 'UBR4', 'score': 3.16}, {'connected_gene': 'AKR7A2', 'score': 1.55}, {'connected_gene': 'ENSG00000255275', 'score': 0.29}]
chr1	GH01I018936	18936189	18943706	1.55	[{'connected_gene': 'IFFO2', 'score': 13.17}, {'connected_gene': 'EMC1', 'score': 7.08}, {'connected_gene': 'AKR7A3', 'score': 5.28}, {'connected_gene': 'ENSG00000255275', 'score': 0.37}]
chr1	GH01I018917	18917037	18920023	0.52	[{'connected_gene': 'IFFO2', 'score': 19.49}, {'connected_gene': 'AKR7A3', 'score': 12.42}, {'connected_gene': 'EMC1', 'score': 5.93}, {'connected_gene': 'ENSG00000255275', 'score': 0.77}, {'connected_gene': 'ALDH4A1', 'score': 0.37}]
chr1	GH01I019389	19389839	19394075	1.25	[{'connected_gene': 'LOC105378614', 'score': 11.87}, {'connected_gene': 'MINOS1', 'score': 11.87}, {'connected_gene': 'CAPZB', 'score': 11.85}, {'connected_gene': 'RNU4-28P', 'score': 11.13}, {'connected_gene': 'PQLC2', 'score': 9.6}, {'connected_gene': 'AKR7A2', 'score': 9.55}, {'connected_gene': 'AKR7A3', 'score': 9.0}, {'connected_gene': 'RN7SL277P', 'score': 0.29}, {'connected_gene': 'GC01P019361', 'score': 0.29}]
chr1	GH01I019231	19231794	19233693	0.6	[{'connected_gene': 'PIR41702', 'score': 550.77}, {'connected_gene': 'EMC1', 'score': 40.65}, {'connected_gene': 'MRTO4', 'score': 7.97}, {'connected_gene': 'AKR7A3', 'score': 5.96}, {'connected_gene': 'LOC101927895', 'score': 0.34}]
chr1	GH01I019169	19169031	19170644	0.74	[{'connected_gene': 'GC01P019169', 'score': 550.77}, {'connected_gene': 'AKR7A3', 'score': 9.05}, {'connected_gene': 'GC01M019138', 'score': 0.37}, {'connected_gene': 'UBR4', 'score': 0.26}]