PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000538962	[[114312001, 114312079], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359712], [114361882, 114362135]]	[[114312052, 114312079], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359702]]
ENST00000466771	[[114324856, 114325511], [114326436, 114326542], [114332370, 114332489], [114337013, 114337122], [114341075, 114341180]]	[[114326518, 114326542], [114332370, 114332489], [114337013, 114337122], [114341075, 114341180]]
ENST00000309195	[[114325246, 114325511], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359712], [114361618, 114361687]]	[[114325400, 114325511], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359702]]
ENST00000407693	[[114325246, 114325511], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359712], [114361882, 114362135]]	[[114325400, 114325511], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359702]]
ENST00000374324	[[114325252, 114326542], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114351543, 114351662], [114355205, 114355262], [114356501, 114356547], [114359596, 114359712]]	[[114351649, 114351662], [114355205, 114355262], [114356501, 114356547], [114359596, 114359702]]
ENST00000238248	[[114326518, 114326542], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359712], [114361882, 114362135]]	[[114326518, 114326542], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348285]]
ENST00000422125	[[114345831, 114345869], [114348277, 114348445], [114356501, 114356547], [114359596, 114359712], [114361882, 114361975]]	[[114345831, 114345869], [114348277, 114348445], [114356501, 114356547], [114359596, 114359702]]
ENST00000374313	[[114354577, 114355262], [114356501, 114356547], [114359596, 114359712], [114361882, 114362096]]	None
ENST00000374308	[[114354646, 114355262], [114356501, 114356547], [114359596, 114359712], [114361618, 114361687]]	None
ENST00000485319	[[114354970, 114355262], [114359596, 114359693]]	None
NM_001146109	[[114312001, 114312079], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359712], [114361882, 114362135]]	[[114312052, 114312079], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359702]]
NM_012212	[[114325246, 114325511], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359712], [114361618, 114361711]]	[[114325400, 114325511], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359702]]
NM_001146108	[[114325246, 114325511], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359712], [114361882, 114362135]]	[[114325400, 114325511], [114332370, 114332489], [114337013, 114337122], [114341075, 114341231], [114345751, 114345869], [114348277, 114348445], [114355205, 114355262], [114356501, 114356547], [114359596, 114359702]]

Promoter

Chrom	Start	End	Description
chr9	114361665	114361719	CAGE_peak_2_at_PTGR1_5end
chr9	114361919	114361935	CAGE_peak_1_at_PTGR1_5end
chr9	114362093	114362138	CAGE_peak_3_at_PTGR1_5end
chr9	114362139	114362150	CAGE_peak_4_at_PTGR1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I111895	111895081	111905616	2.48	[{'connected_gene': 'UGCG', 'score': 550.77}, {'connected_gene': 'RNU6-1013P', 'score': 11.05}, {'connected_gene': 'GNG10', 'score': 6.87}, {'connected_gene': 'ENSG00000224067', 'score': 4.92}, {'connected_gene': 'C9orf84', 'score': 4.87}, {'connected_gene': 'PTGR1', 'score': 4.74}, {'connected_gene': 'MIR4668', 'score': 0.29}]
chr9	GH09I111288	111288881	111289030	0.56	[{'connected_gene': 'OR2K2', 'score': 10.3}, {'connected_gene': 'PTGR1', 'score': 4.83}, {'connected_gene': 'LOC105376219', 'score': 0.77}]
chr9	GH09I111623	111622741	111622890	0.79	[{'connected_gene': 'PTGR1', 'score': 7.42}, {'connected_gene': 'LRRC37A5P', 'score': 0.44}, {'connected_gene': 'PIR58841', 'score': 0.39}]
chr9	GH09I111622	111622001	111622170	0.56	[{'connected_gene': 'PTGR1', 'score': 8.41}, {'connected_gene': 'LRRC37A5P', 'score': 0.44}, {'connected_gene': 'PIR58841', 'score': 0.39}]
chr9	GH09I111626	111626572	111628420	0.93	[{'connected_gene': 'PTGR1', 'score': 9.85}, {'connected_gene': 'DNAJC25', 'score': 6.01}, {'connected_gene': 'LRRC37A5P', 'score': 0.77}, {'connected_gene': 'PIR58841', 'score': 0.37}]
chr9	GH09I111597	111597767	111600402	1.88	[{'connected_gene': 'PTGR1', 'score': 566.3}, {'connected_gene': 'GNG10', 'score': 16.06}, {'connected_gene': 'LRRC37A5P', 'score': 6.67}, {'connected_gene': 'ZNF483', 'score': 5.82}, {'connected_gene': 'ENSG00000224644', 'score': 0.34}]
chr9	GH09I111602	111602790	111605978	0.67	[{'connected_gene': 'PTGR1', 'score': 17.32}, {'connected_gene': 'GNG10', 'score': 10.95}, {'connected_gene': 'ENSG00000224644', 'score': 10.91}, {'connected_gene': 'ECPAS', 'score': 10.31}, {'connected_gene': 'PIR33411', 'score': 0.77}, {'connected_gene': 'LRRC37A5P', 'score': 0.31}]
chr9	GH09I111600	111600888	111602001	1.25	[{'connected_gene': 'PTGR1', 'score': 560.65}, {'connected_gene': 'GNG10', 'score': 13.09}, {'connected_gene': 'ZNF483', 'score': 5.81}, {'connected_gene': 'ECPAS', 'score': 2.1}, {'connected_gene': 'PIR33411', 'score': 0.44}]
chr9	GH09I111851	111851048	111852425	1.18	[{'connected_gene': 'PTGR1', 'score': 4.59}, {'connected_gene': 'GNG10', 'score': 4.23}, {'connected_gene': 'RNU6-1013P', 'score': 0.39}, {'connected_gene': 'UGCG', 'score': 0.25}]
chr9	GH09I111232	111232961	111234594	0.43	[{'connected_gene': 'PTGR1', 'score': 7.28}, {'connected_gene': 'LPAR1', 'score': 6.62}, {'connected_gene': 'ZNF483', 'score': 4.72}, {'connected_gene': 'GNG10', 'score': 4.61}, {'connected_gene': 'MIR7702', 'score': 0.28}, {'connected_gene': 'LOC105376219', 'score': 0.23}, {'connected_gene': 'ENSG00000227531', 'score': 0.23}, {'connected_gene': 'RNY4P18', 'score': 0.12}, {'connected_gene': 'GC09M111098', 'score': 0.12}]
chr9	GH09I111470	111470386	111471757	0.2	[{'connected_gene': 'PTGR1', 'score': 8.45}, {'connected_gene': 'ZNF483', 'score': 8.12}, {'connected_gene': 'ECPAS', 'score': 0.39}, {'connected_gene': 'RNA5SP294', 'score': 0.22}]
chr9	GH09I110767	110767028	110768330	0.51	[{'connected_gene': 'PTGR1', 'score': 4.64}, {'connected_gene': 'RPS21P5', 'score': 0.26}, {'connected_gene': 'GC09P110867', 'score': 0.15}, {'connected_gene': 'MUSK', 'score': 0.15}]
chr9	GH09I111033	111033422	111039897	2.27	[{'connected_gene': 'LPAR1', 'score': 555.81}, {'connected_gene': 'SVEP1', 'score': 12.25}, {'connected_gene': 'PTGR1', 'score': 4.33}, {'connected_gene': 'ENSG00000207401', 'score': 0.15}]
chr9	GH09I110891	110891768	110893057	0.8	[{'connected_gene': 'LPAR1', 'score': 10.5}, {'connected_gene': 'PTGR1', 'score': 5.87}, {'connected_gene': 'C9orf152', 'score': 5.64}, {'connected_gene': 'GC09P110904', 'score': 0.39}, {'connected_gene': 'GC09P110867', 'score': 0.34}]
chr9	GH09I111298	111298063	111300030	0.91	[{'connected_gene': 'LPAR1', 'score': 11.22}, {'connected_gene': 'PTGR1', 'score': 4.86}, {'connected_gene': 'LOC105376219', 'score': 0.39}, {'connected_gene': 'OR2K2', 'score': 0.29}]
chr9	GH09I111254	111254000	111254401	0.31	[{'connected_gene': 'LPAR1', 'score': 4.88}, {'connected_gene': 'PTGR1', 'score': 4.58}, {'connected_gene': 'MIR7702', 'score': 0.37}, {'connected_gene': 'LOC105376219', 'score': 0.29}, {'connected_gene': 'ENSG00000227531', 'score': 0.29}, {'connected_gene': 'RNY4P18', 'score': 0.1}, {'connected_gene': 'GC09M111098', 'score': 0.1}]
chr9	GH09I111117	111117494	111119290	0.31	[{'connected_gene': 'LPAR1', 'score': 17.07}, {'connected_gene': 'PTGR1', 'score': 7.2}, {'connected_gene': 'RNY4P18', 'score': 0.34}, {'connected_gene': 'GC09M111098', 'score': 0.34}, {'connected_gene': 'MIR7702', 'score': 0.1}]
chr9	GH09I110976	110976964	110978170	0.94	[{'connected_gene': 'LPAR1', 'score': 10.94}, {'connected_gene': 'RNU6-432P', 'score': 10.5}, {'connected_gene': 'PTGR1', 'score': 7.17}, {'connected_gene': 'ENSG00000207401', 'score': 0.26}]
chr9	GH09I111854	111854504	111855948	0.31	[{'connected_gene': 'C9orf84', 'score': 7.38}, {'connected_gene': 'PTGR1', 'score': 5.97}, {'connected_gene': 'GNG10', 'score': 4.96}, {'connected_gene': 'RNU6-1013P', 'score': 0.37}, {'connected_gene': 'UGCG', 'score': 0.26}]
chr9	GH09I112072	112072180	112076211	1.65	[{'connected_gene': 'C9orf84', 'score': 11.01}, {'connected_gene': 'ENSG00000224067', 'score': 11.01}, {'connected_gene': 'RNU6-1013P', 'score': 10.88}, {'connected_gene': 'SUSD1', 'score': 5.25}, {'connected_gene': 'UGCG', 'score': 3.98}, {'connected_gene': 'GNG10', 'score': 1.69}, {'connected_gene': 'PTGR1', 'score': 1.61}, {'connected_gene': 'ENSG00000259953', 'score': 0.28}, {'connected_gene': 'RNU6-855P', 'score': 0.21}]
chr9	GH09I111356	111356152	111357279	0.74	[{'connected_gene': 'ZNF483', 'score': 7.87}, {'connected_gene': 'PTGR1', 'score': 5.86}, {'connected_gene': 'PIR34688', 'score': 0.37}, {'connected_gene': 'RNA5SP294', 'score': 0.22}]
chr9	GH09I111888	111888645	111893314	1.3	[{'connected_gene': 'RNU6-710P', 'score': 11.68}, {'connected_gene': 'RNU6-1013P', 'score': 11.42}, {'connected_gene': 'GNG10', 'score': 8.61}, {'connected_gene': 'C9orf84', 'score': 5.09}, {'connected_gene': 'PTGR1', 'score': 4.39}, {'connected_gene': 'UGCG', 'score': 0.44}]
chr9	GH09I112045	112045269	112048200	1.3	[{'connected_gene': 'ENSG00000259953', 'score': 7.09}, {'connected_gene': 'GNG10', 'score': 2.24}, {'connected_gene': 'UGCG', 'score': 2.14}, {'connected_gene': 'PTGR1', 'score': 1.33}, {'connected_gene': 'RNU6-855P', 'score': 0.16}, {'connected_gene': 'SUSD1', 'score': 0.13}]
chr9	GH09I111481	111481421	111485286	2.26	[{'connected_gene': 'ECPAS', 'score': 550.77}, {'connected_gene': 'PTGR1', 'score': 11.77}, {'connected_gene': 'ZNF483', 'score': 8.69}, {'connected_gene': 'RNA5SP294', 'score': 0.19}]
chr9	GH09I111572	111572826	111573985	0.66	[{'connected_gene': 'ENSG00000224644', 'score': 550.77}, {'connected_gene': 'PTGR1', 'score': 17.35}, {'connected_gene': 'ZNF483', 'score': 8.3}]
chr9	GH09I111527	111527373	111530710	0.54	[{'connected_gene': 'ENSG00000224644', 'score': 11.04}, {'connected_gene': 'ECPAS', 'score': 10.71}, {'connected_gene': 'ZNF483', 'score': 8.55}, {'connected_gene': 'PTGR1', 'score': 5.34}]