PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000536642	[[64008474, 64008604], [64009855, 64010030], [64010670, 64010783], [64010922, 64011141]]	None
ENST00000309366	[[64008475, 64008604], [64009855, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011596]]	[[64009859, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011501]]
ENST00000541388	[[64008545, 64008604], [64009855, 64010030], [64010670, 64010969], [64011312, 64011348], [64011439, 64011575]]	None
ENST00000449942	[[64008627, 64008710], [64009855, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011598]]	[[64009859, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011501]]
ENST00000535135	[[64009137, 64009466], [64009855, 64010030], [64010670, 64010783], [64010922, 64010944]]	[[64009859, 64010030], [64010670, 64010783], [64010922, 64010944]]
ENST00000394540	[[64009219, 64009685], [64009855, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011604]]	[[64009859, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011501]]
NM_004470	[[64008412, 64008604], [64009855, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011607]]	[[64009859, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011501]]
NM_001135208	[[64008603, 64008710], [64009855, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011607]]	[[64009859, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011501]]
NM_057092	[[64009587, 64009685], [64009855, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011607]]	[[64009859, 64010030], [64010670, 64010783], [64010922, 64010969], [64011312, 64011348], [64011439, 64011501]]

Promoter

Chrom	Start	End	Description
chr11	64008110	64008119	CAGE_peak_23_at_FKBP2_5end
chr11	64008133	64008168	CAGE_peak_11_at_FKBP2_5end
chr11	64008422	64008431	CAGE_peak_6_at_FKBP2_5end
chr11	64008443	64008477	CAGE_peak_3_at_FKBP2_5end
chr11	64008483	64008494	CAGE_peak_4_at_FKBP2_5end
chr11	64008525	64008585	CAGE_peak_1_at_FKBP2_5end
chr11	64008991	64009014	CAGE_peak_8_at_FKBP2_5end
chr11	64009072	64009137	CAGE_peak_2_at_FKBP2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I064354	64354689	64361259	2.72	[{'connected_gene': 'RPS6KA4', 'score': 559.68}, {'connected_gene': 'LOC102723878', 'score': 20.26}, {'connected_gene': 'PLCB3', 'score': 13.55}, {'connected_gene': 'ENSG00000231680', 'score': 6.78}, {'connected_gene': 'TRPT1', 'score': 4.82}, {'connected_gene': 'MARK2', 'score': 4.13}, {'connected_gene': 'PPP1R14B', 'score': 3.69}, {'connected_gene': 'ESRRA', 'score': 3.36}, {'connected_gene': 'PRDX5', 'score': 2.81}, {'connected_gene': 'TRMT112', 'score': 2.76}, {'connected_gene': 'BAD', 'score': 2.56}, {'connected_gene': 'NUDT22', 'score': 2.25}, {'connected_gene': 'CDC42BPG', 'score': 1.9}, {'connected_gene': 'FKBP2', 'score': 1.29}, {'connected_gene': 'GC11M064349', 'score': 0.77}, {'connected_gene': 'CCDC88B', 'score': 0.37}]
chr11	GH11I064093	64093372	64095726	1.24	[{'connected_gene': 'PLCB3', 'score': 17.24}, {'connected_gene': 'SF1', 'score': 16.07}, {'connected_gene': 'ENSG00000256341', 'score': 11.89}, {'connected_gene': 'ZFPL1', 'score': 10.37}, {'connected_gene': 'NAALADL1', 'score': 10.36}, {'connected_gene': 'TRPT1', 'score': 9.42}, {'connected_gene': 'VEGFB', 'score': 6.92}, {'connected_gene': 'NRXN2', 'score': 4.55}, {'connected_gene': 'FKBP2', 'score': 4.31}, {'connected_gene': 'ENSG00000256481', 'score': 0.39}, {'connected_gene': 'PIR46997', 'score': 0.34}, {'connected_gene': 'FLRT1', 'score': 0.22}, {'connected_gene': 'ENSG00000256824', 'score': 0.22}, {'connected_gene': 'MACROD1', 'score': 0.19}]
chr11	GH11I064237	64237035	64253602	2.32	[{'connected_gene': 'PPP1R14B', 'score': 572.68}, {'connected_gene': 'FKBP2', 'score': 550.77}, {'connected_gene': 'LOC105369340', 'score': 550.77}, {'connected_gene': 'PLCB3', 'score': 550.44}, {'connected_gene': 'TRPT1', 'score': 23.86}, {'connected_gene': 'LOC102723878', 'score': 22.35}, {'connected_gene': 'VEGFB', 'score': 19.71}, {'connected_gene': 'TRMT112', 'score': 17.45}, {'connected_gene': 'FERMT3', 'score': 12.7}, {'connected_gene': 'GPR137', 'score': 11.63}, {'connected_gene': 'BAD', 'score': 11.57}, {'connected_gene': 'ENSG00000257086', 'score': 6.66}, {'connected_gene': 'ENSG00000256116', 'score': 5.79}, {'connected_gene': 'FLRT1', 'score': 5.1}, {'connected_gene': 'PIR60417', 'score': 0.44}]
chr11	GH11I064215	64215169	64215258	0.49	[{'connected_gene': 'FKBP2', 'score': 12.56}, {'connected_gene': 'LOC105369340', 'score': 12.55}, {'connected_gene': 'ENSG00000257086', 'score': 12.55}, {'connected_gene': 'PPP1R14B', 'score': 12.55}, {'connected_gene': 'PLCB3', 'score': 12.53}, {'connected_gene': 'GPR137', 'score': 11.59}, {'connected_gene': 'BAD', 'score': 11.56}, {'connected_gene': 'MACROD1', 'score': 10.78}, {'connected_gene': 'FERMT3', 'score': 0.44}, {'connected_gene': 'NUDT22', 'score': 0.39}]
chr11	GH11I063999	63998949	64000024	1.39	[{'connected_gene': 'LOC101927673', 'score': 550.77}, {'connected_gene': 'SF1', 'score': 15.23}, {'connected_gene': 'ENSG00000257086', 'score': 11.6}, {'connected_gene': 'MEN1', 'score': 10.84}, {'connected_gene': 'OTUB1', 'score': 10.32}, {'connected_gene': 'RARRES3', 'score': 4.64}, {'connected_gene': 'NAA40', 'score': 4.6}, {'connected_gene': 'FKBP2', 'score': 4.29}, {'connected_gene': 'GC11P063911', 'score': 0.16}, {'connected_gene': 'MACROD1', 'score': 0.1}]
chr11	GH11I064090	64090801	64091800	1.4	[{'connected_gene': 'ENSG00000256341', 'score': 11.77}, {'connected_gene': 'TRPT1', 'score': 9.23}, {'connected_gene': 'LOC102723878', 'score': 5.02}, {'connected_gene': 'FKBP2', 'score': 4.29}, {'connected_gene': 'ENSG00000256481', 'score': 0.44}, {'connected_gene': 'PIR46997', 'score': 0.31}, {'connected_gene': 'FLRT1', 'score': 0.22}, {'connected_gene': 'ENSG00000256824', 'score': 0.22}, {'connected_gene': 'MACROD1', 'score': 0.19}]