PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000350082	[[52866076, 52870101], [52871112, 52871235], [52874236, 52874365], [52876566, 52876715], [52876834, 52877025], [52878459, 52878780], [52880880, 52881048], [52883127, 52883299], [52884024, 52884157], [52895862, 52895942], [52897330, 52897452], [52902736, 52902791], [52905933, 52906206], [52926393, 52926568]]	[[52869946, 52870101], [52871112, 52871235], [52874236, 52874365], [52876566, 52876715], [52876834, 52877025], [52878459, 52878780], [52880880, 52881048], [52883127, 52883299], [52884024, 52884157], [52895862, 52895942], [52897330, 52897452], [52902736, 52902791], [52905933, 52906034]]
ENST00000356971	[[52866108, 52870101], [52871112, 52871235], [52874236, 52874365], [52876566, 52876715], [52876834, 52877025], [52878459, 52878780], [52880880, 52881048], [52883127, 52883299], [52884024, 52884157], [52895862, 52895942], [52897330, 52897452], [52902736, 52902791], [52905933, 52906206], [52925733, 52925844], [52926393, 52926600]]	[[52869946, 52870101], [52871112, 52871235], [52874236, 52874365], [52876566, 52876715], [52876834, 52877025], [52878459, 52878780], [52880880, 52881048], [52883127, 52883299], [52884024, 52884157], [52895862, 52895942], [52897330, 52897452], [52902736, 52902791], [52905933, 52906034]]
NM_016513	[[52866097, 52870101], [52871112, 52871235], [52874236, 52874365], [52876566, 52876715], [52876834, 52877025], [52878459, 52878780], [52880880, 52881048], [52883127, 52883299], [52884024, 52884157], [52895862, 52895942], [52897330, 52897452], [52902736, 52902791], [52905933, 52906206], [52925733, 52925844], [52926393, 52926600]]	[[52869946, 52870101], [52871112, 52871235], [52874236, 52874365], [52876566, 52876715], [52876834, 52877025], [52878459, 52878780], [52880880, 52881048], [52883127, 52883299], [52884024, 52884157], [52895862, 52895942], [52897330, 52897452], [52902736, 52902791], [52905933, 52906034]]
NM_014920	[[52866097, 52870101], [52871112, 52871235], [52874236, 52874365], [52876566, 52876715], [52876834, 52877025], [52878459, 52878780], [52880880, 52881048], [52883127, 52883299], [52884024, 52884157], [52895862, 52895942], [52897330, 52897452], [52902736, 52902791], [52905933, 52906206], [52926393, 52926600]]	[[52869946, 52870101], [52871112, 52871235], [52874236, 52874365], [52876566, 52876715], [52876834, 52877025], [52878459, 52878780], [52880880, 52881048], [52883127, 52883299], [52884024, 52884157], [52895862, 52895942], [52897330, 52897452], [52902736, 52902791], [52905933, 52906034]]

Promoter

Chrom	Start	End	Description
chr6	52926476	52926500	CAGE_peak_2_at_ICK_5end
chr6	52926514	52926530	CAGE_peak_3_at_ICK_5end
chr6	52926539	52926668	CAGE_peak_1_at_ICK_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I052407	52407523	52407672	0.63	[{'connected_gene': 'TRAM2', 'score': 10.3}, {'connected_gene': 'TRAM2-AS1', 'score': 10.3}, {'connected_gene': 'ICK', 'score': 9.67}, {'connected_gene': 'PAQR8', 'score': 4.27}, {'connected_gene': 'PIR61259', 'score': 0.77}, {'connected_gene': 'EFHC1', 'score': 0.25}, {'connected_gene': 'PIR35463', 'score': 0.25}]
chr6	GH06I052410	52410552	52411597	0.4	[{'connected_gene': 'TRAM2', 'score': 10.3}, {'connected_gene': 'TRAM2-AS1', 'score': 10.3}, {'connected_gene': 'ICK', 'score': 9.67}, {'connected_gene': 'PAQR8', 'score': 4.92}, {'connected_gene': 'PIR61259', 'score': 0.44}, {'connected_gene': 'PIR35463', 'score': 0.26}, {'connected_gene': 'EFHC1', 'score': 0.25}]
chr6	GH06I053119	53119044	53120832	1.1	[{'connected_gene': 'GCM1', 'score': 12.26}, {'connected_gene': 'RNU6-464P', 'score': 12.24}, {'connected_gene': 'ENSG00000218713', 'score': 11.31}, {'connected_gene': 'ICK', 'score': 5.2}, {'connected_gene': 'ENSG00000261745', 'score': 0.44}, {'connected_gene': 'PIR53393', 'score': 0.31}]
chr6	GH06I052663	52663164	52665624	1.53	[{'connected_gene': 'LOC730101', 'score': 573.2}, {'connected_gene': 'MCM3', 'score': 19.25}, {'connected_gene': 'EFHC1', 'score': 12.51}, {'connected_gene': 'TRAM2', 'score': 11.59}, {'connected_gene': 'TRAM2-AS1', 'score': 11.59}, {'connected_gene': 'ICK', 'score': 9.97}, {'connected_gene': 'TMEM14A', 'score': 7.14}, {'connected_gene': 'GC06P052657', 'score': 0.44}]
chr6	GH06I052412	52412408	52414439	0.46	[{'connected_gene': 'MCM3', 'score': 18.28}, {'connected_gene': 'PAQR8', 'score': 16.21}, {'connected_gene': 'TRAM2', 'score': 11.21}, {'connected_gene': 'TRAM2-AS1', 'score': 11.21}, {'connected_gene': 'TMEM14A', 'score': 10.67}, {'connected_gene': 'ICK', 'score': 9.67}, {'connected_gene': 'PIR61259', 'score': 0.44}, {'connected_gene': 'PIR35463', 'score': 0.28}, {'connected_gene': 'EFHC1', 'score': 0.23}]
chr6	GH06I052992	52992994	52997088	2.32	[{'connected_gene': 'GSTA4', 'score': 550.77}, {'connected_gene': 'RN7SK', 'score': 550.77}, {'connected_gene': 'GC06P052997', 'score': 550.77}, {'connected_gene': 'ENSG00000202198', 'score': 550.77}, {'connected_gene': 'EFHC1', 'score': 30.23}, {'connected_gene': 'MCM3', 'score': 30.11}, {'connected_gene': 'ICK', 'score': 16.24}, {'connected_gene': 'GSTA3', 'score': 10.15}, {'connected_gene': 'GC06P052982', 'score': 0.39}]
chr6	GH06I053040	53040580	53044964	1.12	[{'connected_gene': 'GSTA3', 'score': 9.99}, {'connected_gene': 'ICK', 'score': 5.45}, {'connected_gene': 'LRRC1', 'score': 4.06}, {'connected_gene': 'FBXO9', 'score': 0.44}, {'connected_gene': 'GC06P053034', 'score': 0.44}]
chr6	GH06I052856	52856013	52856895	0.71	[{'connected_gene': 'GSTA1', 'score': 13.57}, {'connected_gene': 'GSTA3', 'score': 10.63}, {'connected_gene': 'ICK', 'score': 10.56}, {'connected_gene': 'GSTA7P', 'score': 6.55}, {'connected_gene': 'GC06P052867', 'score': 0.44}, {'connected_gene': 'GSTA11P', 'score': 0.39}, {'connected_gene': 'GSTA5', 'score': 0.39}]
chr6	GH06I052672	52672563	52672732	0.69	[{'connected_gene': 'TMEM14A', 'score': 550.77}, {'connected_gene': 'EFHC1', 'score': 10.9}, {'connected_gene': 'ICK', 'score': 9.59}, {'connected_gene': 'ENSG00000271227', 'score': 0.37}]
chr6	GH06I053064	53064283	53069499	2.48	[{'connected_gene': 'FBXO9', 'score': 550.39}, {'connected_gene': 'MCM3', 'score': 21.65}, {'connected_gene': 'EFHC1', 'score': 12.99}, {'connected_gene': 'GSTA3', 'score': 9.95}, {'connected_gene': 'ICK', 'score': 5.0}, {'connected_gene': 'GC06P053085', 'score': 0.37}]
chr6	GH06I053054	53054035	53063285	2.27	[{'connected_gene': 'ICK', 'score': 550.77}, {'connected_gene': 'MCM3', 'score': 15.89}, {'connected_gene': 'TRAM2', 'score': 10.66}, {'connected_gene': 'GSTA3', 'score': 9.76}, {'connected_gene': 'FBXO9', 'score': 0.44}]
chr6	GH06I053022	53022419	53027405	0.38	[{'connected_gene': 'ICK', 'score': 16.54}, {'connected_gene': 'FBXO9', 'score': 11.87}, {'connected_gene': 'GSTA3', 'score': 10.18}, {'connected_gene': 'GC06P053016', 'score': 0.44}, {'connected_gene': 'GC06P053034', 'score': 0.44}]
chr6	GH06I053009	53009627	53016741	0.92	[{'connected_gene': 'ICK', 'score': 15.8}, {'connected_gene': 'FBXO9', 'score': 11.24}, {'connected_gene': 'GC06P053016', 'score': 0.77}, {'connected_gene': 'RN7SK', 'score': 0.37}, {'connected_gene': 'ENSG00000202198', 'score': 0.37}]
chr6	GH06I053087	53087432	53087705	0.22	[{'connected_gene': 'ICK', 'score': 10.19}, {'connected_gene': 'GC06M053079', 'score': 0.77}, {'connected_gene': 'GC06P053085', 'score': 0.77}, {'connected_gene': 'FBXO9', 'score': 0.28}]
chr6	GH06I053047	53047536	53049734	1.18	[{'connected_gene': 'ICK', 'score': 5.54}, {'connected_gene': 'FBXO9', 'score': 0.77}, {'connected_gene': 'GC06P053034', 'score': 0.39}]
chr6	GH06I053031	53031393	53032060	0.2	[{'connected_gene': 'ICK', 'score': 15.67}, {'connected_gene': 'GC06P053034', 'score': 0.77}, {'connected_gene': 'GC06P053016', 'score': 0.37}]
chr6	GH06I053028	53028199	53029934	0.31	[{'connected_gene': 'ICK', 'score': 10.96}, {'connected_gene': 'GC06P053034', 'score': 0.44}, {'connected_gene': 'GC06P053016', 'score': 0.39}]
chr6	GH06I053111	53111877	53113672	0.78	[{'connected_gene': 'ICK', 'score': 14.1}, {'connected_gene': 'ENSG00000261745', 'score': 0.39}, {'connected_gene': 'PIR53393', 'score': 0.37}]
chr6	GH06I052975	52975777	52977822	0.49	[{'connected_gene': 'GSTA9P', 'score': 12.27}, {'connected_gene': 'ICK', 'score': 10.79}, {'connected_gene': 'GSTA3', 'score': 10.73}, {'connected_gene': 'GC06M052979', 'score': 0.77}]
chr6	GH06I052814	52814947	52815926	1.05	[{'connected_gene': 'PIR38149', 'score': 550.77}, {'connected_gene': 'GSTA6P', 'score': 550.77}, {'connected_gene': 'GSTA1', 'score': 15.82}, {'connected_gene': 'GSTA3', 'score': 11.0}, {'connected_gene': 'ICK', 'score': 10.52}]
chr6	GH06I053032	53032468	53036419	0.92	[{'connected_gene': 'GC06P053034', 'score': 550.77}, {'connected_gene': 'ICK', 'score': 16.77}, {'connected_gene': 'FBXO9', 'score': 0.37}]
chr6	GH06I053019	53019693	53021043	0.98	[{'connected_gene': 'GC06P053016', 'score': 0.77}, {'connected_gene': 'GC06P053034', 'score': 0.39}, {'connected_gene': 'ICK', 'score': 0.26}]