PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000297904	[[15363712, 15364381], [15365285, 15365481], [15371189, 15371290], [15373271, 15373420], [15376124, 15376315], [15381230, 15381441], [15401978, 15402498]]	[[15364254, 15364381], [15365285, 15365481], [15371189, 15371290], [15373271, 15373420], [15376124, 15376315], [15381230, 15381441], [15401978, 15402068]]
ENST00000488351	[[15364093, 15364381], [15365285, 15365597]]	None
NM_004469	[[15363712, 15364381], [15365285, 15365481], [15371189, 15371290], [15373271, 15373420], [15376124, 15376315], [15381230, 15381441], [15401978, 15402535]]	[[15364254, 15364381], [15365285, 15365481], [15371189, 15371290], [15373271, 15373420], [15376124, 15376315], [15381230, 15381441], [15401978, 15402068]]

Promoter

Chrom	Start	End	Description
chrX	15402442	15402487	CAGE_peak_1_at_FIGF_5end
chrX	15402502	15402515	CAGE_peak_3_at_FIGF_5end
chrX	15402524	15402540	CAGE_peak_2_at_FIGF_5end
chrX	15402624	15402632	CAGE_peak_4_at_FIGF_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chrX	GH0XI015417	15417805	15419147	0.52	[{'connected_gene': 'PIR', 'score': 19.97}, {'connected_gene': 'BMX', 'score': 12.77}, {'connected_gene': 'VEGFD', 'score': 0.29}, {'connected_gene': 'PIR-FIGF', 'score': 0.19}]
chrX	GH0XI015451	15451394	15451405	0.22	[{'connected_gene': 'PIR', 'score': 11.36}, {'connected_gene': 'BMX', 'score': 0.39}, {'connected_gene': 'PIR-FIGF', 'score': 0.28}, {'connected_gene': 'VEGFD', 'score': 0.2}]
chrX	GH0XI015404	15404163	15405565	0.52	[{'connected_gene': 'PIR', 'score': 8.04}, {'connected_gene': 'VEGFD', 'score': 0.34}, {'connected_gene': 'BMX', 'score': 0.22}, {'connected_gene': 'PIR-FIGF', 'score': 0.17}]
chrX	GH0XI015473	15473883	15476762	0.73	[{'connected_gene': 'PIR', 'score': 18.96}, {'connected_gene': 'VEGFD', 'score': 5.35}, {'connected_gene': 'BMX', 'score': 0.39}, {'connected_gene': 'PIR-FIGF', 'score': 0.37}]
chrX	GH0XI015471	15471000	15471401	0.89	[{'connected_gene': 'PIR', 'score': 20.21}, {'connected_gene': 'VEGFD', 'score': 4.67}, {'connected_gene': 'BMX', 'score': 0.44}, {'connected_gene': 'PIR-FIGF', 'score': 0.34}]
chrX	GH0XI015492	15492029	15494243	1.95	[{'connected_gene': 'PIR', 'score': 592.97}, {'connected_gene': 'PIR-FIGF', 'score': 550.77}, {'connected_gene': 'VEGFD', 'score': 5.36}, {'connected_gene': 'BMX', 'score': 0.31}]
chrX	GH0XI015789	15789570	15792213	1.96	[{'connected_gene': 'ZRSR2', 'score': 561.69}, {'connected_gene': 'CA5B', 'score': 12.67}, {'connected_gene': 'CA5BP1', 'score': 12.65}, {'connected_gene': 'VEGFD', 'score': 5.16}, {'connected_gene': 'GC0XP015773', 'score': 0.37}, {'connected_gene': 'AP1S2', 'score': 0.21}]
chrX	GH0XI015343	15343119	15343348	0.75	[{'connected_gene': 'BMX', 'score': 11.2}, {'connected_gene': 'PIGA', 'score': 0.44}, {'connected_gene': 'VEGFD', 'score': 0.26}]
chrX	GH0XI015356	15356579	15356708	0.57	[{'connected_gene': 'PIGA', 'score': 12.49}, {'connected_gene': 'ASB11', 'score': 12.41}, {'connected_gene': 'BMX', 'score': 12.16}, {'connected_gene': 'PIR', 'score': 11.49}, {'connected_gene': 'ACE2', 'score': 11.19}, {'connected_gene': 'GS1-594A7.3', 'score': 11.19}, {'connected_gene': 'VEGFD', 'score': 0.31}, {'connected_gene': 'PIR-FIGF', 'score': 0.12}]
chrX	GH0XI015384	15384336	15384395	0.84	[{'connected_gene': 'VEGFD', 'score': 550.77}, {'connected_gene': 'PIGA', 'score': 0.25}, {'connected_gene': 'PIR-FIGF', 'score': 0.14}]
chrX	GH0XI015737	15737177	15739417	1.9	[{'connected_gene': 'CA5B', 'score': 562.56}, {'connected_gene': 'CLTRN', 'score': 13.41}, {'connected_gene': 'CA5BP1', 'score': 12.53}, {'connected_gene': 'ENSG00000200620', 'score': 12.42}, {'connected_gene': 'VEGFD', 'score': 5.16}, {'connected_gene': 'GC0XP015773', 'score': 0.28}]