PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000404648	[[155525285, 155525506], [155526048, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155534001]]	[[155525491, 155525506], [155526048, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533761]]
ENST00000492082	[[155525316, 155525506], [155526048, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155531349], [155532956, 155533050], [155533169, 155533587], [155533683, 155533811]]	None
ENST00000465913	[[155525322, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530995]]	None
ENST00000405164	[[155525324, 155525506], [155526048, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530939], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533795]]	[[155525491, 155525506], [155526048, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530939], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533761]]
ENST00000336098	[[155525727, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533800]]	[[155525985, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533761]]
ENST00000407946	[[155525761, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530939], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533787]]	[[155525985, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530939], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533761]]
ENST00000443553	[[155529790, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533319], [155533542, 155533587], [155533896, 155534119]]	[[155529790, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533048]]
ENST00000393846	[[155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533896, 155533949]]	[[155530781, 155530915], [155531218, 155531349], [155532956, 155533048]]
ENST00000464532	[[155531094, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533808]]	None
ENST00000473393	[[155532387, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533787]]	None
ENST00000465336	[[155532990, 155533587], [155533683, 155533808]]	None
ENST00000484695	[[155533124, 155533353], [155533542, 155533587], [155533683, 155533763]]	None
NM_000509	[[155525285, 155525506], [155526048, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533960]]	[[155525491, 155525506], [155526048, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533761]]
NM_021870	[[155525727, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533902]]	[[155525985, 155526218], [155527856, 155528134], [155529617, 155529802], [155530781, 155530915], [155531218, 155531349], [155532956, 155533050], [155533169, 155533353], [155533542, 155533587], [155533683, 155533761]]

Promoter

Chrom	Start	End	Description
chr4	155530853	155530879	CAGE_peak_3_at_FGG_5end
chr4	155530888	155530899	CAGE_peak_8_at_FGG_5end
chr4	155531252	155531269	CAGE_peak_7_at_FGG_5end
chr4	155531281	155531308	CAGE_peak_6_at_FGG_5end
chr4	155531315	155531320	CAGE_peak_12_at_FGG_5end
chr4	155531321	155531329	CAGE_peak_10_at_FGG_5end
chr4	155533201	155533255	CAGE_peak_4_at_FGG_5end
chr4	155533262	155533272	CAGE_peak_9_at_FGG_5end
chr4	155533277	155533357	CAGE_peak_2_at_FGG_5end
chr4	155533359	155533365	CAGE_peak_13_at_FGG_5end
chr4	155533567	155533596	CAGE_peak_5_at_FGG_5end
chr4	155533798	155533816	CAGE_peak_1_at_FGG_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I154552	154552400	154552600	0.69	[{'connected_gene': 'LRAT', 'score': 11.6}, {'connected_gene': 'FGG', 'score': 10.96}, {'connected_gene': 'LOC100422640', 'score': 0.77}, {'connected_gene': 'PLRG1', 'score': 0.77}]
chr4	GH04I154741	154740789	154740848	0.68	[{'connected_gene': 'LRAT', 'score': 560.82}, {'connected_gene': 'PIR56291', 'score': 550.77}, {'connected_gene': 'GC04M154774', 'score': 550.77}, {'connected_gene': 'GC04M154753', 'score': 550.77}, {'connected_gene': 'PIR62406', 'score': 550.77}, {'connected_gene': 'GC04M154751', 'score': 550.77}, {'connected_gene': 'PIR52192', 'score': 550.77}, {'connected_gene': 'PIR61545', 'score': 550.77}, {'connected_gene': 'GC04M154758', 'score': 550.77}, {'connected_gene': 'GC04M154737', 'score': 550.77}, {'connected_gene': 'PIR31824', 'score': 550.77}, {'connected_gene': 'PIR47588', 'score': 550.77}, {'connected_gene': 'LOC105377500', 'score': 10.99}, {'connected_gene': 'RBM46', 'score': 10.99}, {'connected_gene': 'FGG', 'score': 9.72}]
chr4	GH04I154549	154549311	154551173	1.94	[{'connected_gene': 'PLRG1', 'score': 559.42}, {'connected_gene': 'FGG', 'score': 28.25}, {'connected_gene': 'LRAT', 'score': 11.59}, {'connected_gene': 'GC04M154544', 'score': 0.44}, {'connected_gene': 'RNU6-1285P', 'score': 0.44}]
chr4	GH04I154553	154552189	154552358	0.7	[{'connected_gene': 'PLRG1', 'score': 550.77}, {'connected_gene': 'FGG', 'score': 24.9}, {'connected_gene': 'LRAT', 'score': 11.6}, {'connected_gene': 'LOC100422640', 'score': 0.77}]
chr4	GH04I154616	154616416	154618782	0.95	[{'connected_gene': 'PLRG1', 'score': 9.67}, {'connected_gene': 'FGG', 'score': 0.77}, {'connected_gene': 'LRAT', 'score': 0.44}]
chr4	GH04I154559	154559582	154561299	0.94	[{'connected_gene': 'FGG', 'score': 16.79}, {'connected_gene': 'PLRG1', 'score': 11.66}, {'connected_gene': 'FGB', 'score': 0.77}, {'connected_gene': 'LOC100422640', 'score': 0.44}]
chr4	GH04I154612	154612033	154613870	1.78	[{'connected_gene': 'FGG', 'score': 550.77}, {'connected_gene': 'FGA', 'score': 0.34}]
chr4	GH04I154615	154615380	154615519	0.39	[{'connected_gene': 'FGB', 'score': 3.98}, {'connected_gene': 'FGA', 'score': 3.51}, {'connected_gene': 'FGG', 'score': 3.45}, {'connected_gene': 'LRAT', 'score': 0.39}]
chr4	GH04I154589	154589172	154592491	1.63	[{'connected_gene': 'FGA', 'score': 550.77}, {'connected_gene': 'FGG', 'score': 8.97}, {'connected_gene': 'LRAT', 'score': 4.68}]
chr4	GH04I154598	154598138	154598369	0.92	[{'connected_gene': 'FGA', 'score': 21.23}, {'connected_gene': 'FGB', 'score': 19.11}, {'connected_gene': 'FGG', 'score': 17.28}, {'connected_gene': 'LRAT', 'score': 10.14}]
chr4	GH04I154740	154740983	154742984	0.63	[{'connected_gene': 'PIR56291', 'score': 550.77}, {'connected_gene': 'GC04M154774', 'score': 550.77}, {'connected_gene': 'GC04M154753', 'score': 550.77}, {'connected_gene': 'PIR62406', 'score': 550.77}, {'connected_gene': 'GC04M154751', 'score': 550.77}, {'connected_gene': 'PIR52192', 'score': 550.77}, {'connected_gene': 'PIR61545', 'score': 550.77}, {'connected_gene': 'GC04M154758', 'score': 550.77}, {'connected_gene': 'PIR31824', 'score': 550.77}, {'connected_gene': 'PIR47588', 'score': 550.77}, {'connected_gene': 'LOC105377500', 'score': 11.01}, {'connected_gene': 'RBM46', 'score': 11.01}, {'connected_gene': 'LRAT', 'score': 10.81}, {'connected_gene': 'FGG', 'score': 9.72}]