PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000469792	[[103529898, 103530376], [103531219, 103531326], [103534488, 103534636], [103535298, 103535533], [103535625, 103535854]]	[[103535451, 103535533], [103535625, 103535657]]
ENST00000344255	[[103530080, 103530376], [103531219, 103531326], [103534488, 103534636], [103534886, 103534973], [103535496, 103535533], [103535625, 103535657]]	[[103530085, 103530376], [103531219, 103531326], [103534488, 103534636], [103534886, 103534973], [103535496, 103535533], [103535625, 103535657]]
ENST00000485728	[[103530080, 103530376], [103531219, 103531326], [103534488, 103534669], [103535625, 103535657]]	None
ENST00000320185	[[103530080, 103530376], [103531219, 103531326], [103534488, 103534669], [103534886, 103534973], [103535496, 103535533], [103535625, 103535716]]	[[103530085, 103530376], [103531219, 103531326], [103534488, 103534669], [103534886, 103534973], [103535496, 103535533], [103535625, 103535657]]
ENST00000346714	[[103530080, 103530376], [103531219, 103531326], [103534488, 103534636], [103535496, 103535533], [103535625, 103535731]]	[[103530085, 103530376], [103531219, 103531326], [103534488, 103534636], [103535496, 103535533], [103535625, 103535657]]
ENST00000347978	[[103530080, 103530376], [103531219, 103531326], [103534488, 103534669], [103535496, 103535533], [103535625, 103535827]]	[[103530085, 103530376], [103531219, 103531326], [103534488, 103534669], [103535496, 103535533], [103535625, 103535657]]
NM_033163	[[103529886, 103530376], [103531219, 103531326], [103534488, 103534669], [103534886, 103534973], [103535496, 103535533], [103535625, 103535759]]	[[103530085, 103530376], [103531219, 103531326], [103534488, 103534669], [103534886, 103534973], [103535496, 103535533], [103535625, 103535657]]
NM_033164	[[103529886, 103530376], [103531219, 103531326], [103534488, 103534636], [103534886, 103534973], [103535496, 103535533], [103535625, 103535759]]	[[103530085, 103530376], [103531219, 103531326], [103534488, 103534636], [103534886, 103534973], [103535496, 103535533], [103535625, 103535657]]
NM_006119	[[103529886, 103530376], [103531219, 103531326], [103534488, 103534669], [103535496, 103535533], [103535625, 103535759]]	[[103530085, 103530376], [103531219, 103531326], [103534488, 103534669], [103535496, 103535533], [103535625, 103535657]]
NM_033165	[[103529886, 103530376], [103531219, 103531326], [103534488, 103534636], [103535496, 103535533], [103535625, 103535759]]	[[103530085, 103530376], [103531219, 103531326], [103534488, 103534636], [103535496, 103535533], [103535625, 103535657]]
NM_001206389	[[103529886, 103530376], [103531219, 103531326], [103534488, 103534636], [103535496, 103535533], [103540052, 103540126]]	[[103530085, 103530376], [103531219, 103531326], [103534488, 103534513]]

Promoter

Chrom	Start	End	Description
chr10	103535835	103535845	CAGE_peak_3_at_FGF8_5end
chr10	103535862	103535880	CAGE_peak_1_at_FGF8_5end
chr10	103535882	103535901	CAGE_peak_2_at_FGF8_5end
chr10	103536021	103536028	CAGE_peak_6_at_FGF8_5end
chr10	103536091	103536118	CAGE_peak_5_at_FGF8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I101668	101668261	101668939	0.2	[{'connected_gene': 'FBXW4', 'score': 11.14}, {'connected_gene': 'FGF8', 'score': 10.6}, {'connected_gene': 'RNU6-1165P', 'score': 10.46}, {'connected_gene': 'POLL', 'score': 9.74}, {'connected_gene': 'DPCD', 'score': 9.72}]
chr10	GH10I102007	102007703	102008402	0.2	[{'connected_gene': 'KCNIP2', 'score': 12.2}, {'connected_gene': 'C10orf76', 'score': 11.58}, {'connected_gene': 'HPS6', 'score': 11.56}, {'connected_gene': 'KCNIP2-AS1', 'score': 10.47}, {'connected_gene': 'MGEA5', 'score': 10.47}, {'connected_gene': 'FGF8', 'score': 9.35}, {'connected_gene': 'POLL', 'score': 8.96}, {'connected_gene': 'DPCD', 'score': 8.96}, {'connected_gene': 'ENSG00000222430', 'score': 0.22}]
chr10	GH10I102009	102009800	102010201	1.24	[{'connected_gene': 'KCNIP2', 'score': 12.2}, {'connected_gene': 'C10orf76', 'score': 11.58}, {'connected_gene': 'HPS6', 'score': 11.56}, {'connected_gene': 'KCNIP2-AS1', 'score': 10.47}, {'connected_gene': 'MGEA5', 'score': 10.47}, {'connected_gene': 'FGF8', 'score': 9.35}, {'connected_gene': 'POLL', 'score': 8.96}, {'connected_gene': 'DPCD', 'score': 8.96}, {'connected_gene': 'ENSG00000222430', 'score': 0.22}]
chr10	GH10I101616	101616886	101618129	0.74	[{'connected_gene': 'DPCD', 'score': 16.08}, {'connected_gene': 'POLL', 'score': 11.12}, {'connected_gene': 'FGF8', 'score': 11.05}, {'connected_gene': 'BTRC', 'score': 9.4}, {'connected_gene': 'RNU6-1165P', 'score': 0.44}, {'connected_gene': 'MIR3158-2', 'score': 0.37}, {'connected_gene': 'FBXW4', 'score': 0.18}]
chr10	GH10I101778	101778333	101781520	1.79	[{'connected_gene': 'FGF8', 'score': 550.77}, {'connected_gene': 'HPS6', 'score': 17.86}, {'connected_gene': 'NPM3', 'score': 6.72}, {'connected_gene': 'LOC105378457', 'score': 0.39}]
chr10	GH10I101725	101725852	101726422	0.31	[{'connected_gene': 'FGF8', 'score': 11.32}, {'connected_gene': 'FBXW4', 'score': 11.3}, {'connected_gene': 'POLL', 'score': 10.34}, {'connected_gene': 'DPCD', 'score': 10.32}, {'connected_gene': 'HPS6', 'score': 9.11}, {'connected_gene': 'ENSG00000224817', 'score': 0.37}, {'connected_gene': 'LOC105378458', 'score': 0.26}]
chr10	GH10I101858	101858366	101860237	0.46	[{'connected_gene': 'FGF8', 'score': 10.4}, {'connected_gene': 'PPRC1', 'score': 10.32}, {'connected_gene': 'GC10M101802', 'score': 0.39}, {'connected_gene': 'LOC101927445', 'score': 0.37}, {'connected_gene': 'ENSG00000274742', 'score': 0.23}, {'connected_gene': 'C10orf76', 'score': 0.08}]
chr10	GH10I101776	101776104	101776163	0.61	[{'connected_gene': 'FGF8', 'score': 550.77}, {'connected_gene': 'LOC105378457', 'score': 0.44}]
chr10	GH10I101775	101775905	101775964	0.61	[{'connected_gene': 'FGF8', 'score': 550.77}, {'connected_gene': 'LOC105378457', 'score': 0.44}]
chr10	GH10I101642	101642663	101645492	0.43	[{'connected_gene': 'RNU6-1165P', 'score': 11.9}, {'connected_gene': 'POLL', 'score': 11.16}, {'connected_gene': 'DPCD', 'score': 11.13}, {'connected_gene': 'FGF8', 'score': 10.45}, {'connected_gene': 'RNU2-43P', 'score': 9.59}, {'connected_gene': 'HPS6', 'score': 6.5}, {'connected_gene': 'FBXW4', 'score': 0.23}]
chr10	GH10I101774	101774684	101774833	0.54	[{'connected_gene': 'LOC105378457', 'score': 0.44}, {'connected_gene': 'FGF8', 'score': 0.44}]
chr10	GH10I101767	101767436	101768636	0.93	[{'connected_gene': 'LOC105378457', 'score': 550.77}, {'connected_gene': 'LOC105378458', 'score': 550.77}, {'connected_gene': 'HPS6', 'score': 16.71}, {'connected_gene': 'PSD', 'score': 4.74}, {'connected_gene': 'FGF8', 'score': 0.39}]
chr10	GH10I101285	101285764	101285993	0.64	[{'connected_gene': 'LOC105378453', 'score': 550.77}, {'connected_gene': 'FGF8', 'score': 8.86}, {'connected_gene': 'GC10P101308', 'score': 0.34}]
chr10	GH10I101286	101284924	101284993	0.31	[{'connected_gene': 'LOC105378453', 'score': 550.77}, {'connected_gene': 'FGF8', 'score': 8.86}, {'connected_gene': 'GC10P101308', 'score': 0.34}]
chr10	GH10I101284	101284184	101284213	0.31	[{'connected_gene': 'LOC105378453', 'score': 550.77}, {'connected_gene': 'FGF8', 'score': 8.86}, {'connected_gene': 'GC10P101280', 'score': 0.77}]
chr10	GH10I101287	101285439	101285591	0.38	[{'connected_gene': 'LOC105378453', 'score': 550.77}, {'connected_gene': 'FGF8', 'score': 8.86}, {'connected_gene': 'GC10P101308', 'score': 0.34}]
chr10	GH10I101321	101321930	101321956	0.24	[{'connected_gene': 'ENSG00000230967', 'score': 550.77}, {'connected_gene': 'BTRC', 'score': 10.9}, {'connected_gene': 'RNU2-59P', 'score': 10.5}, {'connected_gene': 'FGF8', 'score': 9.12}, {'connected_gene': 'SLF2', 'score': 1.52}, {'connected_gene': 'LOC105378454', 'score': 0.39}]