PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000535390	[[4537320, 4537569], [4537664, 4537881]]	None
ENST00000543077	[[4537321, 4537569], [4553298, 4553385]]	[[4537560, 4537569], [4553298, 4553385]]
ENST00000228837	[[4543308, 4543557], [4553298, 4553402], [4554390, 4554780]]	[[4543380, 4543557], [4553298, 4553402], [4554390, 4554736]]
NM_020996	[[4543307, 4543557], [4553298, 4553402], [4554390, 4554780]]	[[4543380, 4543557], [4553298, 4553402], [4554390, 4554736]]

Promoter

Chrom	Start	End	Description
chr12	4554976	4554982	CAGE_peak_1_at_FGF6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I004440	4439201	4439652	0.46	[{'connected_gene': 'FGF23', 'score': 10.78}, {'connected_gene': 'RAD51AP1', 'score': 10.08}, {'connected_gene': 'C12orf4', 'score': 10.08}, {'connected_gene': 'FGF6', 'score': 0.44}]
chr12	GH12I004450	4449291	4451636	0.59	[{'connected_gene': 'TIGAR', 'score': 7.34}, {'connected_gene': 'FGF6', 'score': 0.77}, {'connected_gene': 'C12orf4', 'score': 0.17}]
chr12	GH12I004439	4439782	4442727	0.95	[{'connected_gene': 'C12orf4', 'score': 14.46}, {'connected_gene': 'FGF23', 'score': 10.77}, {'connected_gene': 'RAD51AP1', 'score': 10.08}, {'connected_gene': 'FGF6', 'score': 0.77}]
chr12	GH12I004536	4536408	4536467	0.5	[{'connected_gene': 'C12orf4', 'score': 550.77}, {'connected_gene': 'FGF6', 'score': 0.16}]
chr12	GH12I004506	4506311	4508121	0.75	[{'connected_gene': 'FGF6', 'score': 11.39}, {'connected_gene': 'FGF23', 'score': 11.09}, {'connected_gene': 'RAD51AP1', 'score': 10.84}, {'connected_gene': 'C12orf4', 'score': 10.84}, {'connected_gene': 'TIGAR', 'score': 5.21}]
chr12	GH12I004414	4414696	4415622	0.8	[{'connected_gene': 'FGF6', 'score': 11.46}, {'connected_gene': 'FGF23', 'score': 11.42}, {'connected_gene': 'RAD51AP1', 'score': 10.08}, {'connected_gene': 'C12orf4', 'score': 10.08}]
chr12	GH12I004505	4505549	4506050	0.38	[{'connected_gene': 'FGF6', 'score': 11.39}, {'connected_gene': 'FGF23', 'score': 11.09}, {'connected_gene': 'RAD51AP1', 'score': 10.84}, {'connected_gene': 'C12orf4', 'score': 10.84}]
chr12	GH12I004445	4445533	4445592	0.5	[{'connected_gene': 'FGF6', 'score': 550.77}, {'connected_gene': 'FGF23', 'score': 0.2}]
chr12	GH12I004434	4434339	4435444	0.81	[{'connected_gene': 'FGF6', 'score': 0.39}, {'connected_gene': 'FGF23', 'score': 0.22}]
chr12	GH12I004449	4449075	4449224	0.46	[{'connected_gene': 'FGF6', 'score': 0.77}, {'connected_gene': 'C12orf4', 'score': 0.17}]
chr12	GH12I004472	4472132	4472527	0.69	[{'connected_gene': 'FGF6', 'score': 12.23}, {'connected_gene': 'C12orf4', 'score': 0.2}]
chr12	GH12I004484	4484575	4484724	0.49	[{'connected_gene': 'FGF6', 'score': 11.11}, {'connected_gene': 'C12orf4', 'score': 0.23}]
chr12	GH12I003815	3815340	3817937	0.31	[{'connected_gene': 'FGF6', 'score': 9.46}, {'connected_gene': 'PARP11', 'score': 6.61}, {'connected_gene': 'OTUD4P1', 'score': 0.34}, {'connected_gene': 'GC12P005643', 'score': 0.31}]
chr12	GH12I004392	4392558	4392761	0.42	[{'connected_gene': 'FGF6', 'score': 11.12}, {'connected_gene': 'RAD51AP1', 'score': 10.4}, {'connected_gene': 'C12orf4', 'score': 10.4}, {'connected_gene': 'FGF23', 'score': 0.39}]
chr12	GH12I004383	4383000	4383822	0.52	[{'connected_gene': 'FGF6', 'score': 10.6}, {'connected_gene': 'RAD51AP1', 'score': 10.02}, {'connected_gene': 'C12orf4', 'score': 10.02}, {'connected_gene': 'FGF23', 'score': 0.77}]