PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000312465	[[81187752, 81188333], [81196062, 81196166], [81207478, 81211348]]	[[81187978, 81188333], [81196062, 81196166], [81207478, 81207826]]
ENST00000456523	[[81187792, 81188333], [81207478, 81212171]]	[[81187978, 81188333], [81207478, 81207495]]
ENST00000380628	[[81187978, 81188333], [81189637, 81189672]]	None
ENST00000507780	[[81188095, 81188333], [81196062, 81196166], [81222436, 81222483], [81256897, 81257033], [81257701, 81257834]]	[[81188095, 81188333], [81196062, 81196166], [81222436, 81222454]]
ENST00000503413	[[81189418, 81189722], [81196062, 81196166], [81207478, 81210112]]	None
NM_033143	[[81187741, 81188333], [81207478, 81212171]]	[[81187978, 81188333], [81207478, 81207495]]
NM_004464	[[81187741, 81188333], [81196062, 81196166], [81207478, 81212171]]	[[81187978, 81188333], [81196062, 81196166], [81207478, 81207826]]
NM_001291812	[[81189418, 81189722], [81196062, 81196166], [81207478, 81212171]]	[[81196136, 81196166], [81207478, 81207826]]

Promoter

Chrom	Start	End	Description
chr4	81187809	81187827	CAGE_peak_1_at_FGF5_5end
chr4	81189409	81189435	CAGE_peak_2_at_FGF5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I081191	81191895	81194410	0.31	[{'connected_gene': 'PRKG2', 'score': 16.45}, {'connected_gene': 'LOC101928942', 'score': 11.57}, {'connected_gene': 'FGF5', 'score': 4.44}, {'connected_gene': 'GC04M081149', 'score': 0.12}]
chr4	GH04I080321	80321805	80323786	0.54	[{'connected_gene': 'MRPS25P1', 'score': 550.77}, {'connected_gene': 'C4orf22', 'score': 11.15}, {'connected_gene': 'FGF5', 'score': 0.22}]
chr4	GH04I080318	80318236	80320524	0.38	[{'connected_gene': 'C4orf22', 'score': 11.66}, {'connected_gene': 'MRPS25P1', 'score': 0.77}, {'connected_gene': 'FGF5', 'score': 0.23}]
chr4	GH04I080304	80304723	80310356	1.59	[{'connected_gene': 'C4orf22', 'score': 21.95}, {'connected_gene': 'MRPS25P1', 'score': 0.39}, {'connected_gene': 'FGF5', 'score': 0.26}]
chr4	GH04I080292	80292126	80298711	0.43	[{'connected_gene': 'C4orf22', 'score': 22.78}, {'connected_gene': 'FGF5', 'score': 11.52}, {'connected_gene': 'BMP3', 'score': 9.82}, {'connected_gene': 'MRPS25P1', 'score': 0.31}]
chr4	GH04I080284	80284944	80288059	0.46	[{'connected_gene': 'C4orf22', 'score': 5.1}, {'connected_gene': 'FGF5', 'score': 0.37}, {'connected_gene': 'MRPS25P1', 'score': 0.28}]
chr4	GH04I080335	80335127	80336401	1.92	[{'connected_gene': 'C4orf22', 'score': 550.77}, {'connected_gene': 'LOC100419739', 'score': 0.23}, {'connected_gene': 'FGF5', 'score': 0.2}]
chr4	GH04I080277	80277883	80281566	0.2	[{'connected_gene': 'FGF5', 'score': 0.39}, {'connected_gene': 'MRPS25P1', 'score': 0.26}]
chr4	GH04I080276	80276540	80277674	0.31	[{'connected_gene': 'FGF5', 'score': 0.39}, {'connected_gene': 'MRPS25P1', 'score': 0.26}]
chr4	GH04I080171	80171179	80174413	1.21	[{'connected_gene': 'ANTXR2', 'score': 19.33}, {'connected_gene': 'PRDM8', 'score': 11.97}, {'connected_gene': 'FGF5', 'score': 10.06}, {'connected_gene': 'RPSAP39', 'score': 0.39}, {'connected_gene': 'GC04M080167', 'score': 0.18}]
chr4	GH04I080218	80218007	80218258	0.42	[{'connected_gene': 'LOC105377303', 'score': 11.95}, {'connected_gene': 'PRDM8', 'score': 11.93}, {'connected_gene': 'FGF5', 'score': 10.99}, {'connected_gene': 'GC04M080238', 'score': 0.34}, {'connected_gene': 'GC04M080195', 'score': 0.34}, {'connected_gene': 'GC04M080167', 'score': 0.28}]
chr4	GH04I080213	80213121	80213735	0.51	[{'connected_gene': 'LOC105377303', 'score': 11.98}, {'connected_gene': 'PRDM8', 'score': 11.95}, {'connected_gene': 'FGF5', 'score': 10.97}, {'connected_gene': 'GC04M080195', 'score': 0.37}, {'connected_gene': 'GC04M080238', 'score': 0.31}, {'connected_gene': 'GC04M080167', 'score': 0.26}]
chr4	GH04I081195	81195187	81199270	0.66	[{'connected_gene': 'LOC101928942', 'score': 11.55}, {'connected_gene': 'PRKG2', 'score': 6.3}, {'connected_gene': 'FGF5', 'score': 4.77}, {'connected_gene': 'GC04M081149', 'score': 0.12}]
chr4	GH04I080264	80264452	80270188	2.31	[{'connected_gene': 'GC04M080267', 'score': 550.77}, {'connected_gene': 'FGF5', 'score': 550.77}, {'connected_gene': 'MRPS25P1', 'score': 0.23}]
chr4	GH04I080234	80234665	80241752	1.14	[{'connected_gene': 'GC04M080238', 'score': 550.77}, {'connected_gene': 'FGF5', 'score': 11.62}, {'connected_gene': 'GC04M080167', 'score': 0.37}, {'connected_gene': 'GC04M080195', 'score': 0.26}]