PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000168712	[[69587796, 69588253], [69588791, 69588895], [69589512, 69590171]]	[[69588076, 69588253], [69588791, 69588895], [69589512, 69589852]]
ENST00000538040	[[69588116, 69588253], [69589512, 69589932]]	None
NM_002007	[[69587796, 69588253], [69588791, 69588895], [69589512, 69590171]]	[[69588076, 69588253], [69588791, 69588895], [69589512, 69589852]]

Promoter

Chrom	Start	End	Description
chr11	69590101	69590112	CAGE_peak_1_at_FGF4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I069744	69744346	69745305	0.43	[{'connected_gene': 'FGF4', 'score': 12.13}, {'connected_gene': 'FGF3', 'score': 11.39}, {'connected_gene': 'ORAOV1', 'score': 10.55}, {'connected_gene': 'ANO1-AS1', 'score': 9.92}, {'connected_gene': 'LOC100129779', 'score': 0.44}, {'connected_gene': 'GC11M069658', 'score': 0.22}]
chr11	GH11I069733	69733433	69734330	0.49	[{'connected_gene': 'FGF4', 'score': 11.65}, {'connected_gene': 'FGF3', 'score': 11.56}, {'connected_gene': 'ORAOV1', 'score': 10.23}, {'connected_gene': 'LOC100129779', 'score': 0.77}, {'connected_gene': 'FGF19', 'score': 0.31}, {'connected_gene': 'GC11M069658', 'score': 0.2}]
chr11	GH11I069712	69712090	69713037	0.54	[{'connected_gene': 'FGF4', 'score': 11.87}, {'connected_gene': 'ORAOV1', 'score': 11.59}, {'connected_gene': 'FGF3', 'score': 11.1}, {'connected_gene': 'ANO1-AS1', 'score': 10.12}, {'connected_gene': 'FGF19', 'score': 0.44}, {'connected_gene': 'LOC100129779', 'score': 0.31}, {'connected_gene': 'GC11M069658', 'score': 0.16}]
chr11	GH11I069770	69770673	69770822	0.31	[{'connected_gene': 'FGF4', 'score': 0.77}, {'connected_gene': 'LOC100129779', 'score': 0.29}, {'connected_gene': 'GC11M069658', 'score': 0.29}]
chr11	GH11I069772	69772168	69772222	0.34	[{'connected_gene': 'FGF4', 'score': 7.03}, {'connected_gene': 'LOC100129779', 'score': 0.29}, {'connected_gene': 'GC11M069658', 'score': 0.29}]
chr11	GH11I069775	69775331	69775390	0.61	[{'connected_gene': 'FGF4', 'score': 550.77}, {'connected_gene': 'GC11M069658', 'score': 0.31}, {'connected_gene': 'LOC100129779', 'score': 0.28}]
chr11	GH11I069771	69771573	69771802	0.2	[{'connected_gene': 'FGF4', 'score': 0.77}, {'connected_gene': 'LOC100129779', 'score': 0.29}, {'connected_gene': 'GC11M069658', 'score': 0.29}]
chr11	GH11I069965	69965884	69966133	0.38	[{'connected_gene': 'FGF4', 'score': 5.39}, {'connected_gene': 'ENSG00000255191', 'score': 0.37}, {'connected_gene': 'ENSG00000260679', 'score': 0.28}]
chr11	GH11I069842	69842213	69842362	0.57	[{'connected_gene': 'FGF3', 'score': 12.57}, {'connected_gene': 'FGF4', 'score': 11.47}, {'connected_gene': 'FADD', 'score': 10.31}, {'connected_gene': 'ENSG00000254721', 'score': 10.31}, {'connected_gene': 'ENSG00000260348', 'score': 0.2}]
chr11	GH11I069843	69843193	69843322	0.2	[{'connected_gene': 'FGF3', 'score': 12.57}, {'connected_gene': 'FGF4', 'score': 11.47}, {'connected_gene': 'FADD', 'score': 10.31}, {'connected_gene': 'ENSG00000254721', 'score': 10.31}, {'connected_gene': 'ENSG00000260348', 'score': 0.2}]
chr11	GH11I069868	69868208	69868398	0.31	[{'connected_gene': 'FGF3', 'score': 11.57}, {'connected_gene': 'FGF4', 'score': 10.96}, {'connected_gene': 'ANO1-AS1', 'score': 9.81}, {'connected_gene': 'ENSG00000260348', 'score': 0.26}]
chr11	GH11I069867	69867853	69868002	0.64	[{'connected_gene': 'FGF3', 'score': 11.57}, {'connected_gene': 'FGF4', 'score': 10.96}, {'connected_gene': 'ANO1-AS1', 'score': 9.81}, {'connected_gene': 'ENSG00000260348', 'score': 0.26}]
chr11	GH11I069790	69790740	69792402	0.2	[{'connected_gene': 'FGF3', 'score': 5.15}, {'connected_gene': 'GC11M069658', 'score': 0.39}, {'connected_gene': 'FGF4', 'score': 0.37}]
chr11	GH11I070101	70101614	70110059	0.7	[{'connected_gene': 'ORAOV1', 'score': 14.19}, {'connected_gene': 'CTTN', 'score': 12.54}, {'connected_gene': 'ANO1', 'score': 6.43}, {'connected_gene': 'FGF4', 'score': 4.97}, {'connected_gene': 'ENSG00000255143', 'score': 0.34}]
chr11	GH11I069963	69963035	69963784	0.31	[{'connected_gene': 'ANO1-AS1', 'score': 10.49}, {'connected_gene': 'PPFIA1', 'score': 10.3}, {'connected_gene': 'FGF4', 'score': 9.69}, {'connected_gene': 'ANO1', 'score': 5.55}, {'connected_gene': 'ENSG00000255191', 'score': 0.34}, {'connected_gene': 'ENSG00000260679', 'score': 0.28}]
chr11	GH11I069962	69962355	69962504	0.69	[{'connected_gene': 'ANO1-AS1', 'score': 10.49}, {'connected_gene': 'PPFIA1', 'score': 10.3}, {'connected_gene': 'FGF4', 'score': 9.69}, {'connected_gene': 'ANO1', 'score': 4.36}, {'connected_gene': 'ENSG00000255191', 'score': 0.34}, {'connected_gene': 'ENSG00000260679', 'score': 0.28}]
chr11	GH11I070154	70154965	70161060	1.04	[{'connected_gene': 'ANO1-AS1', 'score': 11.49}, {'connected_gene': 'FGF4', 'score': 9.83}, {'connected_gene': 'ANO1', 'score': 7.38}, {'connected_gene': 'PPFIA1', 'score': 2.05}, {'connected_gene': 'CTTN', 'score': 1.85}, {'connected_gene': 'FADD', 'score': 1.5}, {'connected_gene': 'GC11P070167', 'score': 0.44}, {'connected_gene': 'LOC105369372', 'score': 0.37}]
chr11	GH11I069944	69944768	69944888	0.24	[{'connected_gene': 'ANO1-AS1', 'score': 10.57}, {'connected_gene': 'FGF4', 'score': 10.12}, {'connected_gene': 'ANO1', 'score': 4.43}, {'connected_gene': 'ENSG00000260679', 'score': 0.37}, {'connected_gene': 'ENSG00000255191', 'score': 0.26}]
chr11	GH11I069945	69943926	69944286	0.36	[{'connected_gene': 'ANO1-AS1', 'score': 10.57}, {'connected_gene': 'FGF4', 'score': 10.12}, {'connected_gene': 'ANO1', 'score': 3.3}, {'connected_gene': 'ENSG00000260679', 'score': 0.37}, {'connected_gene': 'ENSG00000255191', 'score': 0.26}]
chr11	GH11I069976	69976621	69980639	0.62	[{'connected_gene': 'ANO1-AS1', 'score': 10.02}, {'connected_gene': 'FGF4', 'score': 9.77}, {'connected_gene': 'ENSG00000255191', 'score': 0.44}, {'connected_gene': 'ENSG00000260679', 'score': 0.23}]
chr11	GH11I069981	69981975	69983899	0.68	[{'connected_gene': 'ANO1-AS1', 'score': 10.39}, {'connected_gene': 'FGF4', 'score': 9.88}, {'connected_gene': 'ENSG00000255191', 'score': 0.77}, {'connected_gene': 'ENSG00000260679', 'score': 0.22}]
chr11	GH11I069801	69801573	69801702	0.6	[{'connected_gene': 'GC11M069658', 'score': 550.77}, {'connected_gene': 'FGF4', 'score': 12.04}]
chr11	GH11I069799	69799653	69799802	0.78	[{'connected_gene': 'GC11M069658', 'score': 0.77}, {'connected_gene': 'FGF4', 'score': 0.34}]
chr11	GH11I069140	69140742	69140974	0.25	[{'connected_gene': 'PIR32022', 'score': 550.77}, {'connected_gene': 'PIR35792', 'score': 550.77}, {'connected_gene': 'MRGPRF-AS1', 'score': 10.49}, {'connected_gene': 'MRGPRF', 'score': 10.49}, {'connected_gene': 'ORAOV1', 'score': 9.97}, {'connected_gene': 'FGF4', 'score': 9.33}, {'connected_gene': 'TPCN2', 'score': 1.78}, {'connected_gene': 'GC11P069137', 'score': 0.77}]
chr11	GH11I069137	69137042	69139068	0.87	[{'connected_gene': 'GC11P069137', 'score': 550.77}, {'connected_gene': 'MRGPRF-AS1', 'score': 10.49}, {'connected_gene': 'MRGPRF', 'score': 10.49}, {'connected_gene': 'ORAOV1', 'score': 9.97}, {'connected_gene': 'FGF4', 'score': 9.33}, {'connected_gene': 'PIR35792', 'score': 0.77}, {'connected_gene': 'TPCN2', 'score': 0.17}]
chr11	GH11I069141	69141731	69142101	0.23	[{'connected_gene': 'PIR32022', 'score': 550.77}, {'connected_gene': 'PIR35792', 'score': 550.77}, {'connected_gene': 'MRGPRF-AS1', 'score': 10.49}, {'connected_gene': 'MRGPRF', 'score': 10.49}, {'connected_gene': 'ORAOV1', 'score': 9.97}, {'connected_gene': 'FGF4', 'score': 9.33}, {'connected_gene': 'TPCN2', 'score': 2.49}]