PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000260270	[[110300606, 110301029], [110306557, 110306682], [110327641, 110327771], [110333077, 110335605]]	[[110300844, 110301029], [110306557, 110306682], [110327641, 110327771], [110333077, 110333192]]
NM_004109	[[110300660, 110301029], [110306557, 110306682], [110327641, 110327771], [110333077, 110335608]]	[[110300844, 110301029], [110306557, 110306682], [110327641, 110327771], [110333077, 110333192]]

Promoter

Chrom	Start	End	Description
chr11	110300622	110300692	CAGE_peak_1_at_FDX1_5end
chr11	110300693	110300720	CAGE_peak_3_at_FDX1_5end
chr11	110300811	110300825	CAGE_peak_4_at_FDX1_5end
chr11	110300868	110300900	CAGE_peak_2_at_FDX1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I110311	110311326	110312989	1.38	[{'connected_gene': 'ZC3H12C', 'score': 10.29}, {'connected_gene': 'RDX', 'score': 8.78}, {'connected_gene': 'FDX1', 'score': 1.5}, {'connected_gene': 'LOC105369486', 'score': 0.26}]
chr11	GH11I110497	110497133	110497588	0.53	[{'connected_gene': 'ZC3H12C', 'score': 10.93}, {'connected_gene': 'FDX1', 'score': 1.76}, {'connected_gene': 'RDX', 'score': 1.46}, {'connected_gene': 'GC11P110684', 'score': 0.09}]
chr11	GH11I110490	110490801	110491400	0.74	[{'connected_gene': 'ZC3H12C', 'score': 9.67}, {'connected_gene': 'FDX1', 'score': 1.62}, {'connected_gene': 'RDX', 'score': 1.35}, {'connected_gene': 'GC11P110684', 'score': 0.08}]
chr11	GH11I110091	110091570	110095913	2.49	[{'connected_gene': 'ZC3H12C', 'score': 574.68}, {'connected_gene': 'FDX1', 'score': 1.95}, {'connected_gene': 'RDX', 'score': 1.72}, {'connected_gene': 'GC11P110167', 'score': 0.19}]
chr11	GH11I109999	109999404	110001249	1.33	[{'connected_gene': 'ZC3H12C', 'score': 26.04}, {'connected_gene': 'FDX1', 'score': 1.19}, {'connected_gene': 'ENSG00000270423', 'score': 0.39}, {'connected_gene': 'LOC390250', 'score': 0.25}]
chr11	GH11I110068	110068331	110070640	1.59	[{'connected_gene': 'ZC3H12C', 'score': 11.55}, {'connected_gene': 'FDX1', 'score': 1.49}, {'connected_gene': 'LOC390250', 'score': 0.37}]
chr11	GH11I110086	110086506	110087744	1.28	[{'connected_gene': 'ZC3H12C', 'score': 570.41}, {'connected_gene': 'FDX1', 'score': 1.69}, {'connected_gene': 'LOC390250', 'score': 0.28}]
chr11	GH11I110074	110074879	110079474	1.57	[{'connected_gene': 'ZC3H12C', 'score': 7.59}, {'connected_gene': 'FDX1', 'score': 1.26}, {'connected_gene': 'LOC390250', 'score': 0.31}]
chr11	GH11I110475	110475401	110476212	0.2	[{'connected_gene': 'LOC644277', 'score': 10.22}, {'connected_gene': 'POU2AF1', 'score': 10.22}, {'connected_gene': 'FDX1', 'score': 0.25}, {'connected_gene': 'GC11P110684', 'score': 0.08}]
chr11	GH11I110316	110316691	110321214	1.51	[{'connected_gene': 'RDX', 'score': 21.2}, {'connected_gene': 'ZC3H12C', 'score': 6.35}, {'connected_gene': 'FDX1', 'score': 1.27}, {'connected_gene': 'LOC105369486', 'score': 0.28}]
chr11	GH11I110292	110292512	110300049	2.22	[{'connected_gene': 'RDX', 'score': 559.75}, {'connected_gene': 'FDX1', 'score': 4.64}, {'connected_gene': 'GC11M110268', 'score': 0.34}]
chr11	GH11I110493	110493388	110493712	0.28	[{'connected_gene': 'FDX1', 'score': 8.4}, {'connected_gene': 'ZC3H12C', 'score': 7.91}, {'connected_gene': 'RDX', 'score': 1.59}, {'connected_gene': 'GC11P110684', 'score': 0.08}]
chr11	GH11I110347	110347145	110350464	1.24	[{'connected_gene': 'FDX1', 'score': 15.93}, {'connected_gene': 'RDX', 'score': 14.03}, {'connected_gene': 'ZC3H12C', 'score': 9.01}, {'connected_gene': 'LOC105369486', 'score': 7.06}]
chr11	GH11I110564	110564628	110566204	0.64	[{'connected_gene': 'FDX1', 'score': 6.82}, {'connected_gene': 'LINC02550', 'score': 4.98}, {'connected_gene': 'GC11P110684', 'score': 0.13}]
chr11	GH11I110372	110372380	110375623	1.3	[{'connected_gene': 'FDX1', 'score': 22.98}, {'connected_gene': 'LOC105369486', 'score': 11.07}, {'connected_gene': 'ZC3H12C', 'score': 9.53}, {'connected_gene': 'RDX', 'score': 5.39}, {'connected_gene': 'PIR61577', 'score': 0.26}]
chr11	GH11I110378	110378580	110382489	0.68	[{'connected_gene': 'FDX1', 'score': 30.74}, {'connected_gene': 'LOC105369486', 'score': 7.16}, {'connected_gene': 'RDX', 'score': 2.41}, {'connected_gene': 'PIR61577', 'score': 0.28}]
chr11	GH11I110447	110447174	110447525	0.35	[{'connected_gene': 'FDX1', 'score': 19.12}, {'connected_gene': 'LOC105369486', 'score': 6.86}, {'connected_gene': 'GC11P110684', 'score': 0.07}]
chr11	GH11I110376	110376297	110378326	1.02	[{'connected_gene': 'FDX1', 'score': 22.07}, {'connected_gene': 'LOC105369486', 'score': 0.34}, {'connected_gene': 'PIR61577', 'score': 0.28}]
chr11	GH11I110405	110405250	110406493	0.49	[{'connected_gene': 'FDX1', 'score': 5.08}, {'connected_gene': 'PIR61577', 'score': 0.39}, {'connected_gene': 'LOC105369486', 'score': 0.23}]
chr11	GH11I110427	110427905	110435398	2.19	[{'connected_gene': 'FDX1', 'score': 569.83}, {'connected_gene': 'ENSG00000271390', 'score': 4.85}, {'connected_gene': 'GC11P110684', 'score': 0.07}]
chr11	GH11I110436	110436417	110436566	0.69	[{'connected_gene': 'FDX1', 'score': 10.7}, {'connected_gene': 'GC11P110684', 'score': 0.07}]
chr11	GH11I110498	110497717	110497866	0.2	[{'connected_gene': 'FDX1', 'score': 0.2}, {'connected_gene': 'GC11P110684', 'score': 0.09}]
chr11	GH11I110525	110525137	110526961	0.4	[{'connected_gene': 'FDX1', 'score': 5.85}, {'connected_gene': 'GC11P110684', 'score': 0.1}]
chr11	GH11I110524	110524297	110524446	0.31	[{'connected_gene': 'FDX1', 'score': 0.16}, {'connected_gene': 'GC11P110684', 'score': 0.1}]
chr11	GH11I110513	110513023	110514266	0.2	[{'connected_gene': 'FDX1', 'score': 7.35}, {'connected_gene': 'GC11P110684', 'score': 0.09}]
chr11	GH11I110470	110470986	110472233	0.2	[{'connected_gene': 'FDX1', 'score': 16.02}, {'connected_gene': 'GC11P110684', 'score': 0.08}]
chr11	GH11I110491	110491557	110492800	0.63	[{'connected_gene': 'FDX1', 'score': 13.35}, {'connected_gene': 'GC11P110684', 'score': 0.08}]
chr11	GH11I110478	110478637	110478666	0.52	[{'connected_gene': 'FDX1', 'score': 0.25}, {'connected_gene': 'GC11P110684', 'score': 0.08}]
chr11	GH11I110425	110425379	110426946	0.78	[{'connected_gene': 'FDX1', 'score': 19.45}, {'connected_gene': 'PIR61577', 'score': 0.44}]
chr11	GH11I110479	110479043	110480200	0.96	[{'connected_gene': 'COLCA2', 'score': 31.31}, {'connected_gene': 'ZC3H12C', 'score': 22.29}, {'connected_gene': 'FDX1', 'score': 14.86}, {'connected_gene': 'GC11P110684', 'score': 0.08}]
chr11	GH11I110354	110354498	110358690	1.29	[{'connected_gene': 'LOC105369486', 'score': 571.38}, {'connected_gene': 'RDX', 'score': 18.24}, {'connected_gene': 'FDX1', 'score': 12.41}, {'connected_gene': 'ZC3H12C', 'score': 7.86}, {'connected_gene': 'PIR61577', 'score': 0.21}]