PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000316334	[[28120049, 28122607], [28124469, 28124628], [28127344, 28127576], [28130372, 28130550], [28133978, 28134122], [28136549, 28136918], [28141776, 28141976], [28143165, 28143413], [28155433, 28155940], [28194511, 28194541]]	[[28122471, 28122607], [28124469, 28124628], [28127344, 28127576], [28130372, 28130550], [28133978, 28134122], [28136549, 28136918], [28141776, 28141976], [28143165, 28143413], [28155433, 28155840]]
NM_153371	[[28120049, 28122607], [28124469, 28124628], [28127344, 28127576], [28130372, 28130550], [28133978, 28134122], [28136549, 28136918], [28141776, 28141976], [28143165, 28143413], [28155433, 28155940], [28194511, 28194720]]	[[28122471, 28122607], [28124469, 28124628], [28127344, 28127576], [28130372, 28130550], [28133978, 28134122], [28136549, 28136918], [28141776, 28141976], [28143165, 28143413], [28155433, 28155840]]

Promoter

Chrom	Start	End	Description
chr13	28194640	28194652	CAGE_peak_2_at_LNX2_5end
chr13	28194657	28194751	CAGE_peak_1_at_LNX2_5end
chr13	28195210	28195220	CAGE_peak_7_at_LNX2_5end
chr13	28195229	28195261	CAGE_peak_3_at_LNX2_5end
chr13	28195482	28195491	CAGE_peak_4_at_LNX2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I027617	27617884	27623193	2.27	[{'connected_gene': 'POLR1D', 'score': 581.68}, {'connected_gene': 'LNX2', 'score': 565.3}, {'connected_gene': 'PAN3', 'score': 25.31}, {'connected_gene': 'RNU6-63P', 'score': 0.12}]
chr13	GH13I027476	27476899	27478265	1.2	[{'connected_gene': 'POLR1D', 'score': 12.17}, {'connected_gene': 'LNX2', 'score': 10.57}, {'connected_gene': 'MTIF3', 'score': 7.38}, {'connected_gene': 'RNU6-63P', 'score': 0.39}, {'connected_gene': 'GC13P027459', 'score': 0.37}]
chr13	GH13I027638	27637231	27637468	0.6	[{'connected_gene': 'POLR1D', 'score': 13.1}, {'connected_gene': 'LNX2', 'score': 4.9}, {'connected_gene': 'GC13P027624', 'score': 0.39}, {'connected_gene': 'LOC105370128', 'score': 0.26}]
chr13	GH13I027641	27641667	27645510	1.21	[{'connected_gene': 'POLR1D', 'score': 25.24}, {'connected_gene': 'LNX2', 'score': 11.88}, {'connected_gene': 'RNU6-63P', 'score': 10.09}, {'connected_gene': 'GC13P027624', 'score': 0.37}, {'connected_gene': 'LOC105370128', 'score': 0.28}]
chr13	GH13I027652	27652142	27652666	0.2	[{'connected_gene': 'POLR1D', 'score': 18.63}, {'connected_gene': 'LNX2', 'score': 11.83}, {'connected_gene': 'RNU6-63P', 'score': 9.76}, {'connected_gene': 'GC13P027624', 'score': 0.31}, {'connected_gene': 'LOC105370128', 'score': 0.31}]
chr13	GH13I027613	27612978	27614596	0.71	[{'connected_gene': 'POLR1D', 'score': 24.71}, {'connected_gene': 'LNX2', 'score': 8.38}, {'connected_gene': 'RNU6-63P', 'score': 0.13}]
chr13	GH13I027612	27612035	27612596	0.31	[{'connected_gene': 'POLR1D', 'score': 7.22}, {'connected_gene': 'LNX2', 'score': 0.44}, {'connected_gene': 'RNU6-63P', 'score': 0.13}]
chr13	GH13I027599	27599446	27600854	0.95	[{'connected_gene': 'POLR1D', 'score': 36.33}, {'connected_gene': 'LNX2', 'score': 19.75}, {'connected_gene': 'RNU6-63P', 'score': 0.14}]
chr13	GH13I027578	27578370	27579197	0.59	[{'connected_gene': 'POLR1D', 'score': 30.71}, {'connected_gene': 'LNX2', 'score': 10.98}, {'connected_gene': 'RNU6-63P', 'score': 0.16}]
chr13	GH13I027604	27604671	27608007	0.94	[{'connected_gene': 'POLR1D', 'score': 10.07}, {'connected_gene': 'LNX2', 'score': 9.35}, {'connected_gene': 'RNU6-63P', 'score': 0.13}]
chr13	GH13I027548	27548810	27551853	0.78	[{'connected_gene': 'POLR1D', 'score': 20.17}, {'connected_gene': 'LNX2', 'score': 19.48}, {'connected_gene': 'RNU6-63P', 'score': 11.02}]
chr13	GH13I027573	27573059	27573748	0.51	[{'connected_gene': 'POLR1D', 'score': 19.29}, {'connected_gene': 'LNX2', 'score': 0.25}, {'connected_gene': 'RNU6-63P', 'score': 0.17}]
chr13	GH13I027383	27383456	27383675	0.64	[{'connected_gene': 'RASL11A', 'score': 15.15}, {'connected_gene': 'GTF3A', 'score': 13.18}, {'connected_gene': 'RNU6-70P', 'score': 10.89}, {'connected_gene': 'RNU6-63P', 'score': 10.64}, {'connected_gene': 'LNX2', 'score': 10.44}, {'connected_gene': 'POLR1D', 'score': 10.44}, {'connected_gene': 'PLUT', 'score': 10.22}, {'connected_gene': 'PDX1', 'score': 10.22}, {'connected_gene': 'MTIF3', 'score': 4.72}, {'connected_gene': 'LOC105370126', 'score': 0.44}, {'connected_gene': 'GC13M027403', 'score': 0.37}, {'connected_gene': 'RNY1P1', 'score': 0.37}]
chr13	GH13I027380	27380024	27380213	0.67	[{'connected_gene': 'GTF3A', 'score': 11.79}, {'connected_gene': 'LNX2', 'score': 10.6}, {'connected_gene': 'POLR1D', 'score': 10.6}, {'connected_gene': 'RNU6-63P', 'score': 10.28}, {'connected_gene': 'LOC105370126', 'score': 0.44}, {'connected_gene': 'GC13M027403', 'score': 0.34}, {'connected_gene': 'RNY1P1', 'score': 0.34}]
chr13	GH13I027384	27383704	27383853	0.71	[{'connected_gene': 'GTF3A', 'score': 11.17}, {'connected_gene': 'RNU6-70P', 'score': 10.87}, {'connected_gene': 'RNU6-63P', 'score': 10.64}, {'connected_gene': 'LNX2', 'score': 10.44}, {'connected_gene': 'POLR1D', 'score': 10.44}, {'connected_gene': 'RASL11A', 'score': 10.42}, {'connected_gene': 'PLUT', 'score': 10.22}, {'connected_gene': 'PDX1', 'score': 10.22}, {'connected_gene': 'LOC105370126', 'score': 0.44}, {'connected_gene': 'GC13M027403', 'score': 0.37}, {'connected_gene': 'RNY1P1', 'score': 0.37}]
chr13	GH13I027473	27473064	27473213	0.31	[{'connected_gene': 'LNX2', 'score': 10.57}, {'connected_gene': 'POLR1D', 'score': 10.57}, {'connected_gene': 'MTIF3', 'score': 6.87}, {'connected_gene': 'RNU6-63P', 'score': 0.39}, {'connected_gene': 'GC13P027459', 'score': 0.39}]
chr13	GH13I027533	27533002	27533600	1	[{'connected_gene': 'LNX2', 'score': 10.69}, {'connected_gene': 'POLR1D', 'score': 10.69}, {'connected_gene': 'RNU6-63P', 'score': 10.38}, {'connected_gene': 'MTIF3', 'score': 9.33}]
chr13	GH13I027469	27469890	27471362	0.38	[{'connected_gene': 'MTIF3', 'score': 26.49}, {'connected_gene': 'LNX2', 'score': 10.57}, {'connected_gene': 'POLR1D', 'score': 10.56}, {'connected_gene': 'GC13P027459', 'score': 0.39}, {'connected_gene': 'RNU6-63P', 'score': 0.37}]
chr13	GH13I027372	27372510	27375334	0.94	[{'connected_gene': 'LINC01079', 'score': 550.77}, {'connected_gene': 'LOC105370126', 'score': 550.77}, {'connected_gene': 'GTF3A', 'score': 11.76}, {'connected_gene': 'LNX2', 'score': 10.6}, {'connected_gene': 'POLR1D', 'score': 10.6}, {'connected_gene': 'RNU6-63P', 'score': 10.27}]
chr13	GH13I027375	27375844	27375993	0.62	[{'connected_gene': 'LOC105370126', 'score': 550.77}, {'connected_gene': 'GTF3A', 'score': 11.77}, {'connected_gene': 'LNX2', 'score': 10.6}, {'connected_gene': 'POLR1D', 'score': 10.6}, {'connected_gene': 'RNU6-63P', 'score': 10.27}, {'connected_gene': 'GC13M027403', 'score': 0.31}, {'connected_gene': 'RNY1P1', 'score': 0.31}]
chr13	GH13I027958	27958858	27982215	2	[{'connected_gene': 'CDX2', 'score': 557.17}, {'connected_gene': 'URAD', 'score': 22.79}, {'connected_gene': 'RPL21', 'score': 12.76}, {'connected_gene': 'PLUT', 'score': 12.55}, {'connected_gene': 'PDX1', 'score': 12.54}, {'connected_gene': 'GSX1', 'score': 10.83}, {'connected_gene': 'RN7SL272P', 'score': 10.79}, {'connected_gene': 'LNX2', 'score': 1.62}, {'connected_gene': 'FLT3', 'score': 1.36}, {'connected_gene': 'GC13M027960', 'score': 0.44}, {'connected_gene': 'LOC105370132', 'score': 0.44}]
chr13	GH13I027559	27559844	27559993	0.2	[{'connected_gene': 'RNU6-63P', 'score': 10.72}, {'connected_gene': 'LNX2', 'score': 10.65}, {'connected_gene': 'POLR1D', 'score': 10.65}]
chr13	GH13I027505	27505096	27505601	0.4	[{'connected_gene': 'RNU6-63P', 'score': 0.37}, {'connected_gene': 'LNX2', 'score': 0.13}]
chr13	GH13I027569	27569524	27569613	0.6	[{'connected_gene': 'RNU6-63P', 'score': 10.01}, {'connected_gene': 'LNX2', 'score': 0.23}]
chr13	GH13I027396	27396173	27396810	0.83	[{'connected_gene': 'PLUT', 'score': 10.88}, {'connected_gene': 'PDX1', 'score': 10.88}, {'connected_gene': 'RNU6-63P', 'score': 10.78}, {'connected_gene': 'LNX2', 'score': 10.32}, {'connected_gene': 'POLR1D', 'score': 10.32}, {'connected_gene': 'GC13M027403', 'score': 0.44}, {'connected_gene': 'RNY1P1', 'score': 0.44}, {'connected_gene': 'LOC105370126', 'score': 0.34}]