PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000319694	[[29603426, 29603993], [29605800, 29606911]]	[[29605945, 29606335]]
ENST00000450427	[[29605065, 29605369], [29605800, 29605999]]	[[29605945, 29605999]]
NM_001329996	[[29603426, 29603993], [29605805, 29606911]]	[[29605945, 29606335]]
NM_175887	[[29603426, 29603993], [29605800, 29606911]]	[[29605945, 29606335]]
NM_001329997	[[29605148, 29605369], [29605800, 29606911]]	[[29605945, 29606335]]

Promoter

Chrom	Start	End	Description
chr7	29603394	29603427	CAGE_peak_3_at_PRR15_5end
chr7	29603436	29603471	CAGE_peak_1_at_PRR15_5end
chr7	29603477	29603510	CAGE_peak_2_at_PRR15_5end
chr7	29603521	29603533	CAGE_peak_4_at_PRR15_5end
chr7	29603552	29603566	CAGE_peak_5_at_PRR15_5end
chr7	29603594	29603599	CAGE_peak_11_at_PRR15_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I029619	29619837	29620082	0.68	[{'connected_gene': 'PRR15', 'score': 18.06}, {'connected_gene': 'PLEKHA8', 'score': 13.88}, {'connected_gene': 'ENSG00000264520', 'score': 13.44}, {'connected_gene': 'FKBP14', 'score': 13.09}, {'connected_gene': 'ENSG00000223813', 'score': 10.8}, {'connected_gene': 'ENSG00000226874', 'score': 9.72}, {'connected_gene': 'ZNRF2P2', 'score': 4.72}, {'connected_gene': 'TMSB4XP3', 'score': 0.44}]
chr7	GH07I029612	29612247	29613653	0.43	[{'connected_gene': 'PRR15', 'score': 17.94}, {'connected_gene': 'ENSG00000223813', 'score': 10.98}, {'connected_gene': 'ENSG00000238906', 'score': 10.13}, {'connected_gene': 'DPY19L2P3', 'score': 6.32}, {'connected_gene': 'TMSB4XP3', 'score': 0.39}, {'connected_gene': 'ZNRF2P2', 'score': 0.19}]
chr7	GH07I029602	29602564	29603559	0.2	[{'connected_gene': 'PRR15', 'score': 18.72}, {'connected_gene': 'ENSG00000223813', 'score': 11.68}, {'connected_gene': 'DPY19L2P3', 'score': 5.59}, {'connected_gene': 'TMSB4XP3', 'score': 0.34}, {'connected_gene': 'ZNRF2P2', 'score': 0.18}]
chr7	GH07I029605	29605439	29610643	1.3	[{'connected_gene': 'PRR15', 'score': 19.24}, {'connected_gene': 'ENSG00000223813', 'score': 18.69}, {'connected_gene': 'DPY19L2P3', 'score': 6.21}, {'connected_gene': 'ZNRF2P2', 'score': 4.58}, {'connected_gene': 'TMSB4XP3', 'score': 0.37}]
chr7	GH07I029562	29562543	29568813	2.32	[{'connected_gene': 'PRR15', 'score': 558.74}, {'connected_gene': 'ENSG00000223813', 'score': 11.24}, {'connected_gene': 'CHN2', 'score': 4.79}, {'connected_gene': 'TMSB4XP3', 'score': 0.21}]
chr7	GH07I029487	29487226	29490896	1.26	[{'connected_gene': 'PRR15', 'score': 16.92}, {'connected_gene': 'ENSG00000223813', 'score': 10.5}, {'connected_gene': 'CHN2', 'score': 6.17}, {'connected_gene': 'GC07M029201', 'score': 0.29}, {'connected_gene': 'GC07P029212', 'score': 0.06}]
chr7	GH07I029483	29483033	29483961	1.09	[{'connected_gene': 'PRR15', 'score': 17.86}, {'connected_gene': 'ENSG00000223813', 'score': 10.05}, {'connected_gene': 'CHN2', 'score': 9.69}, {'connected_gene': 'GC07M029201', 'score': 0.26}, {'connected_gene': 'GC07P029212', 'score': 0.06}]
chr7	GH07I029622	29622080	29623685	0.91	[{'connected_gene': 'PRR15', 'score': 18.33}, {'connected_gene': 'ENSG00000223813', 'score': 10.65}, {'connected_gene': 'TMSB4XP3', 'score': 0.77}, {'connected_gene': 'ZNRF2P2', 'score': 0.21}]
chr7	GH07I029587	29587981	29589513	1.26	[{'connected_gene': 'PRR15', 'score': 18.41}, {'connected_gene': 'ENSG00000223813', 'score': 17.03}, {'connected_gene': 'TMSB4XP3', 'score': 0.28}]
chr7	GH07I029569	29569365	29570280	0.84	[{'connected_gene': 'PRR15', 'score': 7.23}, {'connected_gene': 'TMSB4XP3', 'score': 0.22}]
chr7	GH07I029588	29587461	29587513	0.2	[{'connected_gene': 'PRR15', 'score': 16.85}, {'connected_gene': 'ENSG00000223813', 'score': 11.49}, {'connected_gene': 'TMSB4XP3', 'score': 0.28}]
chr7	GH07I029586	29586335	29587388	0.2	[{'connected_gene': 'PRR15', 'score': 20.57}, {'connected_gene': 'ENSG00000223813', 'score': 16.28}, {'connected_gene': 'TMSB4XP3', 'score': 0.28}]
chr7	GH07I029595	29595930	29600445	0.58	[{'connected_gene': 'PRR15', 'score': 16.95}, {'connected_gene': 'ENSG00000223813', 'score': 15.8}, {'connected_gene': 'ZNRF2P2', 'score': 4.76}, {'connected_gene': 'TMSB4XP3', 'score': 0.31}]
chr7	GH07I029478	29478928	29481349	1.59	[{'connected_gene': 'CHN2', 'score': 560.17}, {'connected_gene': 'ENSG00000223813', 'score': 8.25}, {'connected_gene': 'PRR15', 'score': 7.73}, {'connected_gene': 'DPY19L2P3', 'score': 4.97}, {'connected_gene': 'GC07M029201', 'score': 0.26}, {'connected_gene': 'GC07P029212', 'score': 0.06}]
chr7	GH07I029624	29624105	29624254	0.46	[{'connected_gene': 'TMSB4XP3', 'score': 550.77}, {'connected_gene': 'PRR15', 'score': 18.61}, {'connected_gene': 'ENSG00000223813', 'score': 10.63}, {'connected_gene': 'ZNRF2P2', 'score': 0.21}]
chr7	GH07I029684	29684000	29686264	1.36	[{'connected_gene': 'ZNRF2P2', 'score': 569.6}, {'connected_gene': 'LOC646762', 'score': 550.77}, {'connected_gene': 'ENSG00000223813', 'score': 16.51}, {'connected_gene': 'DPY19L2P3', 'score': 13.17}, {'connected_gene': 'FKBP14', 'score': 13.08}, {'connected_gene': 'ENSG00000264520', 'score': 10.84}, {'connected_gene': 'PLEKHA8', 'score': 10.37}, {'connected_gene': 'PRR15', 'score': 6.34}, {'connected_gene': 'MIR550A3', 'score': 0.77}]
chr7	GH07I029449	29449650	29450614	0.82	[{'connected_gene': 'ZNRF2P2', 'score': 10.75}, {'connected_gene': 'ENSG00000223813', 'score': 10.56}, {'connected_gene': 'PRR15', 'score': 10.56}, {'connected_gene': 'GC07M029201', 'score': 0.19}, {'connected_gene': 'GC07P029212', 'score': 0.07}, {'connected_gene': 'CHN2', 'score': 0.05}]
chr7	GH07I029538	29538585	29538594	0.31	[{'connected_gene': 'ENSG00000223813', 'score': 11.78}, {'connected_gene': 'PRR15', 'score': 11.78}, {'connected_gene': 'LOC646745', 'score': 0.39}, {'connected_gene': 'GC07M029201', 'score': 0.39}]
chr7	GH07I029572	29572082	29574320	0.4	[{'connected_gene': 'ENSG00000223813', 'score': 11.36}, {'connected_gene': 'PRR15', 'score': 8.75}, {'connected_gene': 'CHN2', 'score': 6.34}, {'connected_gene': 'TMSB4XP3', 'score': 0.23}]
chr7	GH07I029485	29485383	29485916	0.76	[{'connected_gene': 'ENSG00000223813', 'score': 15.86}, {'connected_gene': 'PRR15', 'score': 10.49}, {'connected_gene': 'CHN2', 'score': 9.6}, {'connected_gene': 'GC07M029201', 'score': 0.28}, {'connected_gene': 'GC07P029212', 'score': 0.06}]
chr7	GH07I029466	29466934	29472903	0.72	[{'connected_gene': 'ENSG00000223813', 'score': 20.28}, {'connected_gene': 'PRR15', 'score': 10.89}, {'connected_gene': 'CHN2', 'score': 6.69}, {'connected_gene': 'GC07M029201', 'score': 0.23}, {'connected_gene': 'GC07P029212', 'score': 0.07}]
chr7	GH07I029496	29495956	29496931	0.52	[{'connected_gene': 'ENSG00000223813', 'score': 10.07}, {'connected_gene': 'PRR15', 'score': 5.94}, {'connected_gene': 'GC07M029201', 'score': 0.31}, {'connected_gene': 'GC07P029212', 'score': 0.06}, {'connected_gene': 'CHN2', 'score': 0.05}]
chr7	GH07I029482	29482264	29482508	0.4	[{'connected_gene': 'ENSG00000223813', 'score': 10.05}, {'connected_gene': 'PRR15', 'score': 10.05}, {'connected_gene': 'GC07M029201', 'score': 0.26}, {'connected_gene': 'GC07P029212', 'score': 0.06}, {'connected_gene': 'CHN2', 'score': 0.05}]
chr7	GH07I029613	29613745	29613914	0.43	[{'connected_gene': 'ENSG00000223813', 'score': 10.81}, {'connected_gene': 'PRR15', 'score': 10.81}, {'connected_gene': 'TMSB4XP3', 'score': 0.39}, {'connected_gene': 'ZNRF2P2', 'score': 0.19}]
chr7	GH07I029592	29592065	29594343	0.58	[{'connected_gene': 'ENSG00000223813', 'score': 20.28}, {'connected_gene': 'PRR15', 'score': 15.45}, {'connected_gene': 'TMSB4XP3', 'score': 0.29}]