PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000403078	[[161551100, 161551339], [161558211, 161558232], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161647117, 161647155], [161647265, 161648440]]	[[161551227, 161551339], [161558211, 161558232], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161647117, 161647155], [161647265, 161647343]]
ENST00000367962	[[161551100, 161551339], [161558211, 161558232], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161648440]]	[[161551227, 161551339], [161558211, 161558232], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161647343]]
ENST00000367960	[[161551100, 161551339], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161648440]]	[[161551227, 161551339], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161647343]]
ENST00000428605	[[161551225, 161551339], [161558211, 161558232], [161641181, 161641439], [161642764, 161643019], [161643253, 161643338], [161643749, 161643863]]	[[161551227, 161551339], [161558211, 161558232], [161641181, 161641439], [161642764, 161643019], [161643253, 161643312]]
ENST00000236937	[[161632936, 161633143], [161640041, 161640062], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161647117, 161647155], [161647265, 161647812]]	[[161633031, 161633143], [161640041, 161640062], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161647117, 161647155], [161647265, 161647343]]
ENST00000367961	[[161632950, 161633143], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161647822]]	[[161633031, 161633143], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161647343]]
ENST00000358671	[[161632950, 161633143], [161640041, 161640062], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161648444]]	[[161633031, 161633143], [161640041, 161640062], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161647343]]
ENST00000480308	[[161632981, 161633143], [161640041, 161640062], [161641181, 161641439], [161642764, 161643019], [161643749, 161647155], [161647265, 161647843]]	None
ENST00000485778	[[161632988, 161633143], [161640041, 161640062], [161641181, 161643019], [161643749, 161643906]]	None
NM_001190828	[[161632904, 161633143], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161648444]]	[[161633031, 161633143], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161647343]]
NM_001002273	[[161632904, 161633143], [161640041, 161640062], [161641184, 161641439], [161642764, 161643019], [161643749, 161643863], [161647117, 161647155], [161647265, 161648444]]	[[161633031, 161633143], [161640041, 161640062], [161641184, 161641439], [161642764, 161643019], [161643749, 161643863], [161647117, 161647155], [161647265, 161647343]]
NM_001002275	[[161632904, 161633143], [161640041, 161640062], [161641184, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161648444]]	[[161633031, 161633143], [161640041, 161640062], [161641184, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161647343]]
NM_001002274	[[161632904, 161633143], [161640041, 161640062], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161647117, 161647155], [161647265, 161648444]]	[[161633031, 161633143], [161640041, 161640062], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161647117, 161647155], [161647265, 161647343]]
NM_004001	[[161632904, 161633143], [161640041, 161640062], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161648444]]	[[161633031, 161633143], [161640041, 161640062], [161641181, 161641439], [161642764, 161643019], [161643749, 161643863], [161645046, 161645103], [161647117, 161647155], [161647265, 161647343]]

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I161560	161560601	161563400	1.1	[{'connected_gene': 'FCGR2C', 'score': 26.69}, {'connected_gene': 'FCRLB', 'score': 11.74}, {'connected_gene': 'FCGR2A', 'score': 11.49}, {'connected_gene': 'FCRLA', 'score': 11.3}, {'connected_gene': 'FCGR2B', 'score': 8.88}, {'connected_gene': 'HSPA7', 'score': 6.16}, {'connected_gene': 'RPS23P10', 'score': 5.92}, {'connected_gene': 'ENSG00000224515', 'score': 0.77}, {'connected_gene': 'ENSG00000273112', 'score': 0.25}]
chr1	GH01I161725	161725619	161729147	1.73	[{'connected_gene': 'FCRLA', 'score': 21.02}, {'connected_gene': 'FCRLB', 'score': 14.02}, {'connected_gene': 'ATF6', 'score': 11.92}, {'connected_gene': 'DEDD', 'score': 11.01}, {'connected_gene': 'B4GALT3', 'score': 10.38}, {'connected_gene': 'FCGR2B', 'score': 6.59}, {'connected_gene': 'RN7SL466P', 'score': 0.44}]
chr1	GH01I161705	161705526	161708764	1.65	[{'connected_gene': 'FCRLA', 'score': 567.54}, {'connected_gene': 'FCRLB', 'score': 11.02}, {'connected_gene': 'FCGR2B', 'score': 8.04}, {'connected_gene': 'HSPA7', 'score': 7.03}, {'connected_gene': 'GC01M161708', 'score': 0.77}]
chr1	GH01I161605	161605600	161606801	0.88	[{'connected_gene': 'HSPA7', 'score': 550.77}, {'connected_gene': 'FCGR3B', 'score': 14.49}, {'connected_gene': 'FCGR2B', 'score': 13.57}, {'connected_gene': 'TRL-CAA6-1', 'score': 0.44}, {'connected_gene': 'FCGR2C', 'score': 0.34}]
chr1	GH01I161653	161653401	161654327	0.72	[{'connected_gene': 'FCGR3B', 'score': 9.21}, {'connected_gene': 'FCGR2B', 'score': 7.17}, {'connected_gene': 'FCGR2C', 'score': 5.71}, {'connected_gene': 'HSPA7', 'score': 5.31}]
chr1	GH01I161637	161637108	161638171	0.54	[{'connected_gene': 'FCGR3B', 'score': 13.57}, {'connected_gene': 'FCGR2B', 'score': 5.98}]
chr1	GH01I161632	161631945	161632004	0.7	[{'connected_gene': 'FCGR3B', 'score': 550.77}, {'connected_gene': 'FCGR2B', 'score': 0.29}]
chr1	GH01I161629	161629801	161630800	0.4	[{'connected_gene': 'FCGR3B', 'score': 550.77}, {'connected_gene': 'FCGR2B', 'score': 10.85}, {'connected_gene': 'GC01P161621', 'score': 0.44}]
chr1	GH01I161544	161544401	161550800	1.46	[{'connected_gene': 'FCGR3A', 'score': 550.77}, {'connected_gene': 'FCGR2C', 'score': 27.51}, {'connected_gene': 'FCGR2A', 'score': 12.27}, {'connected_gene': 'FCRLA', 'score': 11.04}, {'connected_gene': 'FCRLB', 'score': 10.83}, {'connected_gene': 'HSPA7', 'score': 9.88}, {'connected_gene': 'FCGR2B', 'score': 8.86}, {'connected_gene': 'RPS23P10', 'score': 7.61}, {'connected_gene': 'FCGR3B', 'score': 7.11}, {'connected_gene': 'TRN-GTT1-1', 'score': 0.44}, {'connected_gene': 'ENSG00000273112', 'score': 0.29}]
chr1	GH01I161642	161642001	161644800	1.17	[{'connected_gene': 'FCGR2B', 'score': 25.31}, {'connected_gene': 'FCGR2C', 'score': 13.24}, {'connected_gene': 'FCRLB', 'score': 11.95}, {'connected_gene': 'FCGR3B', 'score': 11.58}, {'connected_gene': 'HSPA7', 'score': 5.44}]
chr1	GH01I161718	161718564	161719386	0.9	[{'connected_gene': 'FCGR2B', 'score': 6.72}, {'connected_gene': 'HSPA7', 'score': 6.71}, {'connected_gene': 'FCRLB', 'score': 4.87}, {'connected_gene': 'GC01M161708', 'score': 0.44}]
chr1	GH01I161645	161645742	161648716	0.81	[{'connected_gene': 'FCGR2B', 'score': 26.83}, {'connected_gene': 'FCGR3B', 'score': 13.67}, {'connected_gene': 'FCRLA', 'score': 11.65}]
chr1	GH01I161649	161649999	161651878	0.31	[{'connected_gene': 'FCGR2B', 'score': 28.23}, {'connected_gene': 'FCGR3B', 'score': 6.66}, {'connected_gene': 'HSPA7', 'score': 6.3}, {'connected_gene': 'ATF6', 'score': 5.3}]
chr1	GH01I161661	161661401	161662400	0.4	[{'connected_gene': 'FCGR2B', 'score': 550.77}, {'connected_gene': 'FCGR3B', 'score': 0.31}]
chr1	GH01I161635	161635201	161637000	1	[{'connected_gene': 'FCGR2B', 'score': 28.13}, {'connected_gene': 'FCGR3B', 'score': 8.95}]
chr1	GH01I161638	161638265	161640428	0.69	[{'connected_gene': 'FCGR2B', 'score': 26.66}, {'connected_gene': 'FCGR3B', 'score': 8.89}]
chr1	GH01I161662	161662601	161665200	0.9	[{'connected_gene': 'FCGR2B', 'score': 550.77}, {'connected_gene': 'ENSG00000234211', 'score': 0.39}]
chr1	GH01I161721	161721141	161722829	1.63	[{'connected_gene': 'FCRLB', 'score': 564.51}, {'connected_gene': 'FCGR2B', 'score': 6.59}, {'connected_gene': 'RN7SL466P', 'score': 0.39}]
chr1	GH01I161736	161736156	161737018	1.27	[{'connected_gene': 'RN7SL466P', 'score': 550.77}, {'connected_gene': 'FCRLB', 'score': 13.78}, {'connected_gene': 'ENSG00000272574', 'score': 12.95}, {'connected_gene': 'DDR2', 'score': 12.53}, {'connected_gene': 'FCRLA', 'score': 12.07}, {'connected_gene': 'FCGR2A', 'score': 10.97}, {'connected_gene': 'FCGR2B', 'score': 6.16}, {'connected_gene': 'DUSP12', 'score': 5.44}, {'connected_gene': 'ATF6', 'score': 2.63}, {'connected_gene': 'HSPA6', 'score': 1.26}]
chr1	GH01I161528	161528801	161533518	1.79	[{'connected_gene': 'TRL-CAG1-6', 'score': 550.77}, {'connected_gene': 'TRG-TCC2-6', 'score': 550.77}, {'connected_gene': 'DUSP12', 'score': 26.62}, {'connected_gene': 'USP21', 'score': 23.93}, {'connected_gene': 'FCGR2C', 'score': 20.97}, {'connected_gene': 'FCGR2A', 'score': 16.51}, {'connected_gene': 'PPOX', 'score': 13.32}, {'connected_gene': 'FCRLA', 'score': 11.16}, {'connected_gene': 'FCGR2B', 'score': 9.25}, {'connected_gene': 'HSPA6', 'score': 8.4}, {'connected_gene': 'FCGR3B', 'score': 7.81}, {'connected_gene': 'RPS23P10', 'score': 7.43}, {'connected_gene': 'ARHGAP30', 'score': 6.5}, {'connected_gene': 'FCGR3A', 'score': 5.19}, {'connected_gene': 'USF1', 'score': 3.75}, {'connected_gene': 'FCER1G', 'score': 3.01}, {'connected_gene': 'ATF6', 'score': 2.48}, {'connected_gene': 'OLFML2B', 'score': 2.06}, {'connected_gene': 'ADAMTS4', 'score': 1.95}, {'connected_gene': 'CFAP126', 'score': 1.43}, {'connected_gene': 'PCP4L1', 'score': 1.28}, {'connected_gene': 'ENSG00000273112', 'score': 0.37}]
chr1	GH01I161675	161675635	161677773	0.72	[{'connected_gene': 'ENSG00000234211', 'score': 550.77}, {'connected_gene': 'FCGR3B', 'score': 10.04}, {'connected_gene': 'FCGR2B', 'score': 8.83}, {'connected_gene': 'RPL31P11', 'score': 0.44}]
chr1	GH01I161620	161620801	161625357	1.69	[{'connected_gene': 'GC01P161621', 'score': 550.77}, {'connected_gene': 'DUSP12', 'score': 43.13}, {'connected_gene': 'USP21', 'score': 33.74}, {'connected_gene': 'FCGR2B', 'score': 27.77}, {'connected_gene': 'FCGR3B', 'score': 16.47}, {'connected_gene': 'DEDD', 'score': 13.23}, {'connected_gene': 'PPOX', 'score': 11.99}, {'connected_gene': 'LOC148430', 'score': 11.44}, {'connected_gene': 'B4GALT3', 'score': 11.27}, {'connected_gene': 'FCGR3A', 'score': 7.97}, {'connected_gene': 'FCGR2A', 'score': 2.66}]
chr1	GH01I161611	161611001	161613600	1.75	[{'connected_gene': 'GC01P161612', 'score': 550.77}, {'connected_gene': 'TRL-CAA6-1', 'score': 550.77}, {'connected_gene': 'GC01P161613', 'score': 550.77}, {'connected_gene': 'USP21', 'score': 32.35}, {'connected_gene': 'FCGR2B', 'score': 27.68}, {'connected_gene': 'DUSP12', 'score': 26.66}, {'connected_gene': 'FCGR2C', 'score': 16.95}, {'connected_gene': 'PPOX', 'score': 13.31}, {'connected_gene': 'FCGR3B', 'score': 12.99}, {'connected_gene': 'ATF6', 'score': 12.15}, {'connected_gene': 'B4GALT3', 'score': 11.46}, {'connected_gene': 'DEDD', 'score': 10.41}, {'connected_gene': 'HSPA6', 'score': 6.42}, {'connected_gene': 'HSPA7', 'score': 5.54}, {'connected_gene': 'FCRLB', 'score': 4.64}, {'connected_gene': 'FCGR3A', 'score': 1.67}]